Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46918 * 2 1 4 4 H 1.08991 * 109.47210 * 305.00551 * 3 2 1 5 5 C 1.53000 * 109.46846 * 185.00050 * 3 2 1 6 6 N 1.46499 * 109.46840 * 185.00008 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.34671 * 126.58724 * 274.68418 * 10 9 7 12 12 N 1.34132 * 108.01660 * 179.87623 * 11 10 9 13 13 C 1.30498 * 109.25824 * 0.39832 * 12 11 10 14 14 N 1.35047 * 108.69766 * 359.75426 * 13 12 11 15 15 H 0.97004 * 126.39629 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.46878 * 65.00452 * 3 2 1 17 17 C 1.34777 * 119.99976 * 274.99815 * 16 3 2 18 18 O 1.21285 * 119.99729 * 0.02562 * 17 16 3 19 19 C 1.50692 * 120.00099 * 180.02562 * 17 16 3 20 20 S 1.80998 * 109.47460 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00434 * 180.02562 * 20 19 17 22 22 H 1.08007 * 119.99940 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00037 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99914 * 180.02562 * 23 21 20 25 25 Si 1.86791 * 119.99895 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47181 * 90.00560 * 25 23 21 27 27 H 1.48506 * 109.47281 * 210.00426 * 25 23 21 28 28 H 1.48501 * 109.47737 * 330.00403 * 25 23 21 29 29 H 1.09009 * 109.47313 * 299.99451 * 1 2 3 30 30 H 1.08993 * 109.47728 * 59.99548 * 1 2 3 31 31 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47255 * 240.00648 * 2 1 3 33 33 H 1.08994 * 109.47464 * 119.99975 * 2 1 3 34 34 H 1.09002 * 109.47398 * 305.00335 * 5 3 2 35 35 H 1.09001 * 109.47194 * 65.00515 * 5 3 2 36 36 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 37 37 H 1.09002 * 109.47152 * 300.00160 * 9 7 6 38 38 H 1.09001 * 109.46980 * 60.00059 * 9 7 6 39 39 H 1.07996 * 125.99094 * 0.02562 * 11 10 9 40 40 H 1.07997 * 125.65393 * 179.73219 * 13 12 11 41 41 H 0.96996 * 120.00090 * 94.99890 * 16 3 2 42 42 H 1.08999 * 109.47314 * 300.00030 * 19 17 16 43 43 H 1.09008 * 109.47283 * 59.99627 * 19 17 16 44 44 H 0.96993 * 119.99738 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 4.0629 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0869 8 8 6.1633 2.1485 -0.2583 9 6 5.8981 4.4749 0.0369 10 6 7.3999 4.4769 -0.0883 11 6 8.2882 4.2644 0.9014 12 7 9.5203 4.3477 0.3779 13 6 9.4294 4.6122 -0.8968 14 7 8.1233 4.7009 -1.2285 15 1 7.7648 4.8888 -2.1100 16 7 1.6524 2.0975 1.2519 17 6 0.4351 2.6643 1.3671 18 8 -0.3397 2.6319 0.4346 19 6 0.0367 3.3385 2.6546 20 16 -1.6418 3.9971 2.4966 21 6 -1.8430 4.7092 4.0957 22 1 -1.0428 4.6482 4.8186 23 6 -3.0301 5.3477 4.4267 24 7 -3.1802 5.8801 5.6211 25 14 -4.4142 5.4526 3.1767 26 1 -5.3004 4.2695 3.3189 27 1 -5.2001 6.6907 3.4110 28 1 -3.8427 5.4811 1.8064 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9954 0.8311 0.6658 35 1 3.8498 1.0378 -1.0961 36 1 3.4409 3.5484 0.1316 37 1 5.4671 5.0886 -0.7541 38 1 5.6135 4.8809 1.0076 39 1 8.0501 4.0601 1.9347 40 1 10.2609 4.7394 -1.5742 41 1 2.2719 2.1231 1.9978 42 1 0.0681 2.6144 3.4688 43 1 0.7281 4.1540 2.8669 44 1 -4.0097 6.3266 5.8523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356928373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -53.278618 kcal Electronic energy + Delta-G solvation = -26291.338349 eV Core-core repulsion = 22369.445189 eV Total energy + Delta-G solvation = -3921.893160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.96122 -41.19860 -40.36677 -37.57803 -34.96591 -34.64979 -33.79885 -33.60168 -32.78308 -30.80924 -29.54979 -27.86166 -27.68316 -24.42602 -22.58422 -22.53945 -22.06177 -21.58258 -21.25159 -19.88226 -18.95704 -18.20846 -17.96366 -17.39351 -17.06410 -16.91760 -16.55180 -16.38182 -15.86265 -15.72802 -15.21505 -15.02188 -14.84503 -14.69700 -14.62015 -14.45516 -14.30882 -13.99553 -13.92816 -13.54840 -13.31569 -13.14776 -13.00923 -12.85696 -12.66925 -12.45249 -12.11484 -11.84609 -11.76669 -11.15413 -11.11355 -10.96446 -10.88635 -10.87547 -10.49323 -10.14670 -10.05563 -9.32333 -8.95052 -8.49662 -6.19172 1.02362 1.05335 1.32800 1.48020 1.57849 1.61862 1.64500 2.05895 2.23911 2.26388 2.28433 2.44921 2.74908 2.88889 3.56309 3.65204 3.90666 3.92056 3.99989 4.09372 4.13582 4.15922 4.29622 4.40786 4.52212 4.56190 4.56552 4.63609 4.67626 4.69016 4.84990 4.94780 5.07429 5.19121 5.26094 5.37136 5.48697 5.54649 5.72517 5.78468 6.13995 6.46803 6.50428 6.58852 6.95868 7.14554 7.21285 7.26173 8.62700 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.002266 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.345483 B =12355.616741 C =13962.337404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.143 3.857 4 H 0.086 0.914 5 C 0.122 3.878 6 N -0.720 5.720 7 C 0.515 3.485 8 O -0.575 6.575 9 C -0.062 4.062 10 C -0.007 4.007 11 C -0.042 4.042 12 N -0.542 5.542 13 C 0.187 3.813 14 N -0.555 5.555 15 H 0.434 0.566 16 N -0.710 5.710 17 C 0.541 3.459 18 O -0.545 6.545 19 C -0.114 4.114 20 S -0.170 6.170 21 C -0.528 4.528 22 H 0.061 0.939 23 C 0.043 3.957 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.265 1.265 27 H -0.262 1.262 28 H -0.233 1.233 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.414 0.586 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.242 0.758 41 H 0.414 0.586 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.159 -5.485 -16.805 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.039 3.961 4 H 0.104 0.896 5 C -0.002 4.002 6 N -0.372 5.372 7 C 0.302 3.698 8 O -0.454 6.454 9 C -0.103 4.103 10 C -0.124 4.124 11 C -0.190 4.190 12 N -0.262 5.262 13 C -0.097 4.097 14 N -0.159 5.159 15 H 0.274 0.726 16 N -0.365 5.365 17 C 0.327 3.673 18 O -0.422 6.422 19 C -0.265 4.265 20 S 0.056 5.944 21 C -0.676 4.676 22 H 0.079 0.921 23 C -0.162 4.162 24 N -0.557 5.557 25 Si 0.737 3.263 26 H -0.190 1.190 27 H -0.187 1.187 28 H -0.157 1.157 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.250 0.750 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.258 0.742 41 H 0.251 0.749 42 H 0.124 0.876 43 H 0.134 0.866 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.074 -6.216 -17.879 27.591 hybrid contribution -0.835 0.697 0.997 1.476 sum 19.239 -5.518 -16.882 26.183 Atomic orbital electron populations 1.21740 0.96244 1.00639 1.01500 1.21872 0.95549 0.95128 1.03971 1.21262 0.93176 0.94462 0.87244 0.89566 1.21578 0.91229 0.83820 1.03612 1.45914 1.07282 1.10205 1.73841 1.20889 0.81900 0.91579 0.75384 1.90751 1.56815 1.47785 1.50057 1.20143 0.87795 0.93853 1.08468 1.20695 0.94477 1.09811 0.87367 1.22262 0.88384 1.07953 1.00391 1.70222 1.26188 1.20781 1.09006 1.25633 0.86886 1.03232 0.93913 1.43207 1.07521 1.53953 1.11237 0.72584 1.45819 1.15715 1.57597 1.17325 1.19735 0.81979 0.77660 0.87961 1.90726 1.51681 1.58968 1.40822 1.23297 0.99831 1.03936 0.99475 1.84662 1.17658 1.72340 1.19703 1.22495 1.04833 1.41406 0.98830 0.92064 1.25585 1.00240 0.93461 0.96914 1.70023 1.27899 1.36637 1.21107 0.85861 0.79998 0.79001 0.81453 1.18980 1.18678 1.15690 0.94612 0.93623 0.92677 0.88954 0.90516 0.90420 0.89626 0.74971 0.85038 0.84082 0.81680 0.74189 0.74901 0.87581 0.86641 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.51 71.98 0.61 -2.63 16 2 C -0.13 -1.92 5.61 30.60 0.17 -1.74 16 3 C 0.14 2.11 2.42 44.99 0.11 2.22 16 4 H 0.09 1.55 7.58 -2.39 -0.02 1.53 16 5 C 0.12 1.46 5.23 86.38 0.45 1.91 16 6 N -0.72 -7.90 5.39 -463.05 -2.49 -10.40 16 7 C 0.52 7.57 7.82 87.66 0.69 8.25 16 8 O -0.58 -13.90 16.03 -3.02 -0.05 -13.95 16 9 C -0.06 -0.56 6.26 29.10 0.18 -0.38 16 10 C -0.01 -0.10 5.73 40.95 0.23 0.13 16 11 C -0.04 -0.89 11.79 83.52 0.98 0.09 16 12 N -0.54 -12.42 11.25 -200.31 -2.25 -14.67 16 13 C 0.19 2.73 13.04 180.26 2.35 5.08 16 14 N -0.55 -6.48 6.15 -186.49 -1.15 -7.62 16 15 H 0.43 2.00 8.96 -92.71 -0.83 1.17 16 16 N -0.71 -12.13 4.47 -442.53 -1.98 -14.11 16 17 C 0.54 14.98 6.42 87.65 0.56 15.54 16 18 O -0.55 -19.14 13.00 -3.04 -0.04 -19.18 16 19 C -0.11 -3.77 6.16 71.23 0.44 -3.33 16 20 S -0.17 -7.97 18.55 -56.49 -1.05 -9.02 16 21 C -0.53 -29.49 10.04 67.95 0.68 -28.81 16 22 H 0.06 3.62 8.03 -2.91 -0.02 3.60 16 23 C 0.04 2.47 5.50 84.86 0.47 2.93 16 24 N -0.92 -54.85 13.97 21.65 0.30 -54.55 16 25 Si 0.91 43.63 27.74 68.60 1.90 45.53 16 26 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.23 -10.94 6.74 99.48 0.67 -10.27 16 29 H 0.03 1.00 5.65 -2.38 -0.01 0.99 16 30 H 0.04 1.15 7.85 -2.39 -0.02 1.14 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.41 3.47 8.14 -92.71 -0.75 2.72 16 37 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.24 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.41 5.13 8.60 -92.71 -0.80 4.33 16 42 H 0.11 3.32 8.14 -2.40 -0.02 3.30 16 43 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 44 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -84.14 384.54 -0.24 -84.37 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -1.37 Total: 14.33 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 7.93 Total: -0.74 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -7.57 Total: -101.35 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.09 Total: -33.13 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.90 Total: 45.53 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.05 Total: -9.02 kcal Total: -84.14 -0.24 -84.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356928373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.093 kcal (2) G-P(sol) polarization free energy of solvation -84.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds