Wall clock time and date at job start Sat Apr 11 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47346 * 2 1 4 4 C 1.35364 * 126.38705 * 275.30423 * 3 2 1 5 5 C 1.41496 * 105.50611 * 180.13739 * 4 3 2 6 6 C 1.47706 * 126.52091 * 179.84311 * 5 4 3 7 7 O 1.21570 * 120.00132 * 359.71043 * 6 5 4 8 8 N 1.34777 * 120.00119 * 179.70815 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46684 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47565 * 65.00686 * 10 9 8 12 12 C 1.53003 * 109.47015 * 184.99978 * 10 9 8 13 13 N 1.46496 * 109.47535 * 305.00097 * 10 9 8 14 14 C 1.34781 * 120.00141 * 155.00410 * 13 10 9 15 15 O 1.21276 * 119.99627 * 359.97438 * 14 13 10 16 16 C 1.50694 * 119.99848 * 180.02562 * 14 13 10 17 17 S 1.81009 * 109.47031 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00071 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00070 * 0.02562 * 18 17 16 20 20 C 1.38790 * 119.99760 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00306 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99767 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46986 * 60.00294 * 22 20 18 24 24 H 1.48509 * 109.47100 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47512 * 300.00012 * 22 20 18 26 26 N 1.31812 * 106.96025 * 359.57844 * 5 4 3 27 27 N 1.28463 * 110.07501 * 0.26243 * 26 5 4 28 28 H 0.97002 * 124.88427 * 180.02562 * 27 26 5 29 29 H 1.09001 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47346 * 299.99991 * 1 2 3 31 31 H 1.09002 * 109.47013 * 60.00415 * 1 2 3 32 32 H 1.09001 * 109.47767 * 239.99876 * 2 1 3 33 33 H 1.09002 * 109.47013 * 119.99585 * 2 1 3 34 34 H 1.08007 * 127.24605 * 359.97438 * 4 3 2 35 35 H 0.96995 * 120.00018 * 0.27591 * 8 6 5 36 36 H 1.09000 * 109.47212 * 300.00355 * 9 8 6 37 37 H 1.09001 * 109.46577 * 60.00430 * 9 8 6 38 38 H 1.09001 * 109.47405 * 179.97438 * 12 10 9 39 39 H 1.08999 * 109.47145 * 300.00897 * 12 10 9 40 40 H 1.09000 * 109.46883 * 59.99966 * 12 10 9 41 41 H 0.97002 * 120.00310 * 335.00385 * 13 10 9 42 42 H 1.09007 * 109.46931 * 299.99210 * 16 14 13 43 43 H 1.09001 * 109.47600 * 59.99611 * 16 14 13 44 44 H 0.97008 * 119.99784 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2051 2.2115 -1.0850 5 6 2.6929 3.4412 -0.5832 6 6 3.0426 4.6375 -1.3760 7 8 2.9245 4.6208 -2.5858 8 7 3.4926 5.7475 -0.7581 9 6 3.8400 6.9338 -1.5445 10 6 4.3201 8.0440 -0.6076 11 1 5.2477 7.7363 -0.1250 12 6 4.5641 9.3214 -1.4136 13 7 3.2997 8.2976 0.4124 14 6 3.6518 8.8263 1.6011 15 8 4.8136 9.0916 1.8264 16 6 2.6022 9.0866 2.6506 17 16 3.3832 9.7929 4.1229 18 6 1.9684 9.9916 5.1542 19 1 0.9927 9.7001 4.7945 20 6 2.1081 10.5217 6.4293 21 7 3.2974 10.8765 6.8679 22 14 0.6083 10.7317 7.5229 23 1 -0.0264 9.4088 7.7519 24 1 1.0225 11.3145 8.8245 25 1 -0.3635 11.6392 6.8617 26 7 2.7703 3.3183 0.7269 27 7 2.3882 2.1446 1.0830 28 1 2.3592 1.8246 1.9982 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0137 1.9563 -2.1169 35 1 3.5906 5.7595 0.2068 36 1 4.6341 6.6836 -2.2479 37 1 2.9625 7.2754 -2.0936 38 1 4.9058 10.1126 -0.7461 39 1 5.3233 9.1327 -2.1726 40 1 3.6365 9.6292 -1.8963 41 1 2.3705 8.0851 0.2324 42 1 1.8634 9.7864 2.2597 43 1 2.1115 8.1497 2.9141 44 1 3.3950 11.2466 7.7593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358070851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:01 Heat of formation + Delta-G solvation = -44.181356 kcal Electronic energy + Delta-G solvation = -26081.276110 eV Core-core repulsion = 22159.777437 eV Total energy + Delta-G solvation = -3921.498673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.72527 -41.05062 -40.26687 -37.46283 -35.30072 -34.78886 -34.58205 -33.06924 -32.49441 -30.34495 -30.00951 -27.76183 -27.65408 -24.82162 -24.47247 -22.83160 -22.05959 -21.62575 -21.04156 -19.86363 -18.68505 -18.26342 -17.93233 -17.37641 -16.93446 -16.88046 -16.77044 -16.36604 -16.10277 -15.66255 -15.28768 -15.22158 -14.80895 -14.74641 -14.57564 -14.25748 -14.06071 -13.92405 -13.64076 -13.33964 -13.25490 -13.16695 -12.97130 -12.87189 -12.60833 -12.51085 -12.10521 -12.06052 -11.74623 -11.73521 -11.36296 -11.13215 -10.95267 -10.54658 -10.27767 -10.21211 -10.13933 -9.98340 -8.65850 -8.34631 -6.12243 0.46565 1.09166 1.26292 1.43065 1.45990 1.55684 1.60824 1.81697 2.13013 2.26112 2.29010 2.33087 2.99315 3.31747 3.35691 3.54460 3.66612 3.96207 3.99204 4.05523 4.24053 4.31168 4.32750 4.41513 4.51169 4.51713 4.57739 4.66580 4.72755 4.76740 4.80325 5.00157 5.07649 5.17325 5.21179 5.29783 5.35534 5.40061 5.41407 5.46926 6.05376 6.19447 6.32737 6.46243 6.81634 7.06195 7.06651 7.22726 8.74184 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.002549 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.713388 B =10984.176202 C =13486.891889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.034 3.966 4 C -0.197 4.197 5 C -0.039 4.039 6 C 0.605 3.395 7 O -0.563 6.563 8 N -0.712 5.712 9 C 0.120 3.880 10 C 0.136 3.864 11 H 0.079 0.921 12 C -0.156 4.156 13 N -0.712 5.712 14 C 0.540 3.460 15 O -0.559 6.559 16 C -0.131 4.131 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.263 1.263 26 N -0.274 5.274 27 N -0.366 5.366 28 H 0.459 0.541 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.166 0.834 35 H 0.411 0.589 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.413 0.587 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.013 -22.025 -17.692 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.092 4.092 4 C -0.225 4.225 5 C -0.198 4.198 6 C 0.390 3.610 7 O -0.441 6.441 8 N -0.363 5.363 9 C -0.003 4.003 10 C 0.031 3.969 11 H 0.097 0.903 12 C -0.215 4.215 13 N -0.366 5.366 14 C 0.325 3.675 15 O -0.437 6.437 16 C -0.282 4.282 17 S 0.081 5.919 18 C -0.695 4.695 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.818 3.182 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.111 5.111 27 N -0.083 5.083 28 H 0.307 0.693 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.183 0.817 35 H 0.247 0.753 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.250 0.750 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.745 -20.883 -17.156 27.285 hybrid contribution -2.301 -0.394 0.799 2.468 sum -6.046 -21.278 -16.358 27.511 Atomic orbital electron populations 1.21784 0.93705 1.03211 1.02023 1.20295 0.96495 0.86467 1.05803 1.21932 1.03146 0.97873 0.86252 1.21683 1.07827 0.92155 1.00825 1.21896 1.10133 0.97351 0.90452 1.17030 0.76371 0.81576 0.86003 1.90769 1.55547 1.83545 1.14206 1.45865 1.65799 1.12774 1.11847 1.21778 1.02486 0.82753 0.93328 1.21220 0.91971 0.95454 0.88235 0.90281 1.22073 1.03629 0.95781 1.00022 1.45885 1.12246 1.64851 1.13649 1.19970 0.88669 0.76125 0.82687 1.90698 1.21126 1.51881 1.79975 1.23383 1.01256 1.05629 0.97981 1.85540 1.15291 1.81663 1.09432 1.23164 0.94727 1.49104 1.02497 0.90066 1.26107 1.00300 0.94039 0.98662 1.70175 1.24686 1.40846 1.19000 0.85030 0.77255 0.79121 0.76751 1.18648 1.20379 1.18762 1.73548 1.18658 1.04151 1.14728 1.43455 1.46059 1.07757 1.11020 0.69347 0.90039 0.93105 0.92839 0.87727 0.88353 0.81678 0.75326 0.88668 0.89253 0.93827 0.89184 0.90537 0.74989 0.87429 0.87423 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 71.98 0.71 -0.18 16 2 C -0.05 -0.29 6.49 29.85 0.19 -0.10 16 3 C 0.03 0.45 6.48 41.40 0.27 0.72 16 4 C -0.20 -3.69 10.73 22.41 0.24 -3.45 16 5 C -0.04 -0.89 7.13 42.45 0.30 -0.59 16 6 C 0.60 15.05 7.82 86.75 0.68 15.73 16 7 O -0.56 -16.61 16.93 -3.94 -0.07 -16.68 16 8 N -0.71 -15.03 5.38 -466.09 -2.51 -17.54 16 9 C 0.12 2.14 5.23 86.38 0.45 2.59 16 10 C 0.14 2.85 2.73 44.99 0.12 2.97 16 11 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 12 C -0.16 -2.97 9.48 71.98 0.68 -2.29 16 13 N -0.71 -17.11 4.52 -442.55 -2.00 -19.12 16 14 C 0.54 19.13 7.81 87.65 0.68 19.82 16 15 O -0.56 -24.93 15.52 -3.02 -0.05 -24.97 16 16 C -0.13 -5.12 6.16 71.23 0.44 -4.68 16 17 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 18 C -0.55 -31.09 9.50 67.95 0.65 -30.44 16 19 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -55.75 13.22 21.65 0.29 -55.46 16 22 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 N -0.27 -5.85 11.92 -48.18 -0.57 -6.42 16 27 N -0.37 -5.28 6.83 -47.93 -0.33 -5.60 16 28 H 0.46 3.58 8.96 -219.99 -1.97 1.61 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.41 8.99 7.87 -92.71 -0.73 8.26 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.41 7.80 8.60 -92.71 -0.80 7.00 16 42 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 43 H 0.11 3.80 8.14 -2.40 -0.02 3.79 16 44 H 0.27 15.44 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -82.44 395.62 -0.93 -83.38 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -2.45 Total: 24.88 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.89 Total: 1.35 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -5.13 Total: -104.14 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -0.11 Total: -41.65 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -82.44 -0.93 -83.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358070851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.194 kcal (2) G-P(sol) polarization free energy of solvation -82.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds