Wall clock time and date at job start Sat Apr 11 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.45194 * 109.47339 * 239.99574 * 2 1 3 6 6 C 1.34753 * 116.99813 * 60.00312 * 5 2 1 7 7 O 1.21471 * 120.00363 * 359.97438 * 6 5 2 8 8 C 1.47480 * 119.99907 * 179.97438 * 6 5 2 9 9 N 1.29050 * 125.86844 * 0.02562 * 8 6 5 10 10 O 1.41386 * 112.88654 * 179.64320 * 9 8 6 11 11 C 1.44213 * 107.59040 * 17.49210 * 10 9 8 12 12 H 1.08997 * 110.97269 * 92.71258 * 11 10 9 13 13 C 1.50701 * 110.97475 * 216.45348 * 11 10 9 14 14 O 1.21284 * 119.99623 * 3.54757 * 13 11 10 15 15 N 1.34773 * 119.99963 * 183.54268 * 13 11 10 16 16 C 1.47068 * 136.05684 * 359.63620 * 15 13 11 17 17 C 1.53752 * 87.88725 * 152.95801 * 16 15 13 18 18 O 1.42901 * 114.57432 * 272.66035 * 17 16 15 19 19 C 1.50703 * 114.09093 * 139.77801 * 17 16 15 20 20 H 1.08000 * 120.00139 * 266.56388 * 19 17 16 21 21 C 1.37879 * 119.99798 * 86.55510 * 19 17 16 22 22 N 1.31512 * 120.00057 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99703 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47539 * 90.00345 * 23 21 19 25 25 H 1.48504 * 109.47234 * 210.00204 * 23 21 19 26 26 H 1.48508 * 109.47244 * 330.00033 * 23 21 19 27 27 C 1.47066 * 136.05592 * 179.97438 * 15 13 11 28 28 C 1.51692 * 125.86148 * 179.71323 * 8 6 5 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 38 38 H 1.08999 * 113.46545 * 267.68959 * 16 15 13 39 39 H 1.08994 * 113.46841 * 38.12733 * 16 15 13 40 40 H 0.96697 * 114.00044 * 273.67292 * 18 17 16 41 41 H 0.96997 * 119.99514 * 179.97438 * 22 21 19 42 42 H 1.08995 * 113.47116 * 321.86905 * 27 15 13 43 43 H 1.08997 * 113.46945 * 92.30995 * 27 15 13 44 44 H 1.09003 * 110.79443 * 282.90923 * 28 8 6 45 45 H 1.08995 * 110.79672 * 46.38323 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0140 -0.6845 -1.1854 6 6 1.6520 -0.1725 -2.3782 7 8 0.9509 0.8183 -2.4263 8 6 2.1070 -0.8151 -3.6252 9 7 2.8507 -1.8666 -3.7062 10 8 3.1142 -2.2523 -5.0407 11 6 2.8157 -1.1237 -5.8875 12 1 3.7061 -0.5191 -6.0600 13 6 2.2113 -1.5735 -7.1927 14 8 1.9799 -2.7491 -7.3805 15 7 1.9279 -0.6693 -8.1511 16 6 2.0480 0.7889 -8.3000 17 6 2.1540 0.5679 -9.8179 18 8 3.4804 0.3273 -10.2922 19 6 1.4018 1.5816 -10.6411 20 1 0.3896 1.3767 -10.9572 21 6 2.0059 2.7707 -10.9907 22 7 3.2385 3.0201 -10.6062 23 14 1.0732 4.0276 -12.0105 24 1 0.3408 4.9520 -11.1083 25 1 2.0316 4.8015 -12.8400 26 1 0.1059 3.3285 -12.8943 27 6 1.3569 -0.7060 -9.5059 28 6 1.7759 -0.3572 -5.0329 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 1.6766 -0.2073 2.1393 38 1 1.1505 1.3310 -8.0020 39 1 2.9551 1.1974 -7.8549 40 1 3.9800 1.1317 -10.4879 41 1 3.6635 3.8565 -10.8525 42 1 1.6754 -1.5707 -10.0879 43 1 0.2772 -0.5583 -9.5260 44 1 0.7604 -0.6455 -5.3048 45 1 1.9132 0.7195 -5.1320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362960258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:07 Heat of formation + Delta-G solvation = -95.804427 kcal Electronic energy + Delta-G solvation = -29998.869972 eV Core-core repulsion = 25600.087133 eV Total energy + Delta-G solvation = -4398.782839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40556 -40.57426 -39.36157 -37.50233 -37.28638 -34.62060 -34.17255 -33.24666 -32.28492 -31.50198 -28.67861 -27.80842 -27.79618 -25.86026 -25.53130 -25.26080 -24.00994 -21.46219 -20.47995 -19.73716 -18.72479 -17.94469 -17.63663 -17.11148 -16.92628 -16.44321 -16.18483 -15.68317 -15.42505 -15.14597 -14.85624 -14.72763 -14.30525 -14.24086 -14.01247 -13.60476 -13.30601 -13.10777 -12.91665 -12.88339 -12.61610 -12.41090 -12.39995 -12.32795 -12.19483 -11.95713 -11.83491 -11.75660 -11.65115 -11.36745 -11.14767 -11.10141 -10.83013 -10.61143 -10.57360 -10.37630 -10.20005 -9.67231 -9.30331 -8.87741 -8.54247 -8.04418 -6.49342 -4.59877 0.41997 1.74103 2.33628 2.49819 2.81604 3.09115 3.18163 3.20898 3.34973 3.90013 4.03008 4.11640 4.18018 4.26626 4.33260 4.47501 4.55244 4.73804 4.86453 4.88740 5.09140 5.14376 5.25283 5.30833 5.34908 5.37474 5.42582 5.43639 5.45382 5.61614 5.76485 5.84939 5.85368 5.95694 6.00348 6.25630 6.32347 6.42008 6.52864 6.65813 6.98335 7.27116 7.54230 7.69583 8.23013 8.43421 8.46944 9.11903 9.38734 10.57513 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.002554 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.077743 B =10959.060650 C =12152.895789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.116 3.884 3 C -0.186 4.186 4 C -0.141 4.141 5 O -0.331 6.331 6 C 0.550 3.450 7 O -0.472 6.472 8 C 0.052 3.948 9 N -0.205 5.205 10 O -0.145 6.145 11 C 0.032 3.968 12 H 0.121 0.879 13 C 0.542 3.458 14 O -0.536 6.536 15 N -0.629 5.629 16 C 0.066 3.934 17 C 0.242 3.758 18 O -0.570 6.570 19 C -0.534 4.534 20 H 0.074 0.926 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.910 3.090 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.110 3.890 28 C -0.115 4.115 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.395 0.605 41 H 0.275 0.725 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -0.046 19.697 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.080 3.920 3 C -0.243 4.243 4 C -0.198 4.198 5 O -0.247 6.247 6 C 0.391 3.609 7 O -0.356 6.356 8 C -0.140 4.140 9 N 0.052 4.948 10 O -0.169 6.169 11 C -0.030 4.030 12 H 0.139 0.861 13 C 0.328 3.672 14 O -0.414 6.414 15 N -0.363 5.363 16 C -0.057 4.057 17 C 0.200 3.800 18 O -0.383 6.383 19 C -0.572 4.572 20 H 0.092 0.908 21 C -0.130 4.130 22 N -0.538 5.538 23 Si 0.737 3.263 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.011 4.011 28 C -0.155 4.155 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.252 0.748 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.134 0.866 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.574 -1.909 20.390 20.641 hybrid contribution -0.602 2.051 -0.899 2.319 sum -3.177 0.142 19.492 19.750 Atomic orbital electron populations 1.22527 0.93580 1.03403 1.04776 1.22372 0.94745 0.92644 0.82198 1.22527 1.02063 0.94893 1.04797 1.21863 1.02531 1.01251 0.94139 1.86710 1.69095 1.55091 1.13832 1.19378 0.77538 0.81440 0.82575 1.90838 1.33696 1.23604 1.87453 1.24821 0.97737 0.96852 0.94612 1.78551 1.06221 1.09428 1.00572 1.91432 1.84153 1.32409 1.08890 1.23665 0.99184 0.88439 0.91694 0.86133 1.19090 0.79651 0.85444 0.82998 1.90718 1.54460 1.16653 1.79577 1.49665 1.60468 1.09948 1.16235 1.24430 1.01021 0.77938 1.02334 1.19549 0.82558 0.89887 0.88015 1.86057 1.26281 1.39031 1.86963 1.21413 1.00733 1.00761 1.34333 0.90804 1.25082 0.95023 0.98127 0.94793 1.69249 1.12663 1.26164 1.45742 0.86293 0.79535 0.80512 0.79989 1.20240 1.20852 1.19472 1.23404 0.98277 1.00254 0.79187 1.22771 1.02165 1.04640 0.85877 0.91650 0.89711 0.90562 0.90564 0.91623 0.89686 0.91190 0.91180 0.89985 0.89498 0.91523 0.74832 0.91469 0.91173 0.89268 0.86633 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.37 37.16 0.31 -1.17 16 2 C 0.12 0.99 1.13 -90.62 -0.10 0.89 16 3 C -0.19 -1.48 8.37 37.16 0.31 -1.17 16 4 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 5 O -0.33 -3.77 9.88 -40.64 -0.40 -4.17 16 6 C 0.55 6.75 7.27 34.50 0.25 7.01 16 7 O -0.47 -6.00 12.50 -19.24 -0.24 -6.24 16 8 C 0.05 0.70 7.30 -79.51 -0.58 0.12 16 9 N -0.21 -3.15 12.51 35.26 0.44 -2.71 16 10 O -0.14 -2.54 11.82 -30.20 -0.36 -2.90 16 11 C 0.03 0.51 4.07 -26.88 -0.11 0.40 16 12 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 13 C 0.54 10.64 7.38 -10.99 -0.08 10.56 16 14 O -0.54 -12.42 17.36 -13.28 -0.23 -12.65 16 15 N -0.63 -12.31 3.69 -185.05 -0.68 -12.99 16 16 C 0.07 1.27 7.86 -8.37 -0.07 1.20 16 17 C 0.24 5.44 1.59 -91.13 -0.14 5.29 16 18 O -0.57 -14.02 13.55 -35.23 -0.48 -14.50 16 19 C -0.53 -12.60 8.68 -34.44 -0.30 -12.89 16 20 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 21 C 0.07 1.71 5.39 -17.82 -0.10 1.62 16 22 N -0.90 -21.64 11.01 55.43 0.61 -21.03 16 23 Si 0.91 18.59 29.54 -169.99 -5.02 13.57 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C 0.11 2.26 8.02 -8.51 -0.07 2.19 16 28 C -0.12 -1.50 6.44 -26.40 -0.17 -1.67 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.83 5.88 -51.93 -0.31 0.52 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.83 5.88 -51.93 -0.31 0.52 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.39 9.82 6.32 45.56 0.29 10.11 16 41 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 44 H 0.12 1.49 7.91 -51.93 -0.41 1.08 16 45 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -28.75 381.79 -6.89 -35.64 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.77 Total: 10.42 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -0.51 Total: 11.81 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.37 Total: -36.73 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.71 Total: -40.46 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.75 -6.89 -35.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362960258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.169 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds