Wall clock time and date at job start Sat Apr 11 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.45194 * 109.47339 * 239.99574 * 2 1 3 6 6 C 1.34753 * 116.99813 * 60.00312 * 5 2 1 7 7 O 1.21471 * 120.00363 * 359.97438 * 6 5 2 8 8 C 1.47480 * 119.99907 * 179.97438 * 6 5 2 9 9 N 1.29050 * 125.86844 * 0.02562 * 8 6 5 10 10 O 1.41386 * 112.88654 * 179.64320 * 9 8 6 11 11 C 1.44213 * 107.59040 * 17.49210 * 10 9 8 12 12 H 1.08997 * 110.97269 * 92.71258 * 11 10 9 13 13 C 1.50701 * 110.97475 * 216.45348 * 11 10 9 14 14 O 1.21284 * 119.99623 * 3.54757 * 13 11 10 15 15 N 1.34773 * 119.99963 * 183.54268 * 13 11 10 16 16 C 1.47068 * 136.05684 * 359.63620 * 15 13 11 17 17 C 1.53752 * 87.88725 * 152.95801 * 16 15 13 18 18 O 1.42901 * 114.57432 * 272.66035 * 17 16 15 19 19 C 1.50703 * 114.09093 * 139.77801 * 17 16 15 20 20 H 1.08000 * 120.00139 * 266.56388 * 19 17 16 21 21 C 1.37879 * 119.99798 * 86.55510 * 19 17 16 22 22 N 1.31512 * 120.00057 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99703 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47539 * 90.00345 * 23 21 19 25 25 H 1.48504 * 109.47234 * 210.00204 * 23 21 19 26 26 H 1.48508 * 109.47244 * 330.00033 * 23 21 19 27 27 C 1.47066 * 136.05592 * 179.97438 * 15 13 11 28 28 C 1.51692 * 125.86148 * 179.71323 * 8 6 5 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 38 38 H 1.08999 * 113.46545 * 267.68959 * 16 15 13 39 39 H 1.08994 * 113.46841 * 38.12733 * 16 15 13 40 40 H 0.96697 * 114.00044 * 273.67292 * 18 17 16 41 41 H 0.96997 * 119.99514 * 179.97438 * 22 21 19 42 42 H 1.08995 * 113.47116 * 321.86905 * 27 15 13 43 43 H 1.08997 * 113.46945 * 92.30995 * 27 15 13 44 44 H 1.09003 * 110.79443 * 282.90923 * 28 8 6 45 45 H 1.08995 * 110.79672 * 46.38323 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0140 -0.6845 -1.1854 6 6 1.6520 -0.1725 -2.3782 7 8 0.9509 0.8183 -2.4263 8 6 2.1070 -0.8151 -3.6252 9 7 2.8507 -1.8666 -3.7062 10 8 3.1142 -2.2523 -5.0407 11 6 2.8157 -1.1237 -5.8875 12 1 3.7061 -0.5191 -6.0600 13 6 2.2113 -1.5735 -7.1927 14 8 1.9799 -2.7491 -7.3805 15 7 1.9279 -0.6693 -8.1511 16 6 2.0480 0.7889 -8.3000 17 6 2.1540 0.5679 -9.8179 18 8 3.4804 0.3273 -10.2922 19 6 1.4018 1.5816 -10.6411 20 1 0.3896 1.3767 -10.9572 21 6 2.0059 2.7707 -10.9907 22 7 3.2385 3.0201 -10.6062 23 14 1.0732 4.0276 -12.0105 24 1 0.3408 4.9520 -11.1083 25 1 2.0316 4.8015 -12.8400 26 1 0.1059 3.3285 -12.8943 27 6 1.3569 -0.7060 -9.5059 28 6 1.7759 -0.3572 -5.0329 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 1.6766 -0.2073 2.1393 38 1 1.1505 1.3310 -8.0020 39 1 2.9551 1.1974 -7.8549 40 1 3.9800 1.1317 -10.4879 41 1 3.6635 3.8565 -10.8525 42 1 1.6754 -1.5707 -10.0879 43 1 0.2772 -0.5583 -9.5260 44 1 0.7604 -0.6455 -5.3048 45 1 1.9132 0.7195 -5.1320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362960258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:07 Heat of formation + Delta-G solvation = -114.315667 kcal Electronic energy + Delta-G solvation = -29999.672680 eV Core-core repulsion = 25600.087133 eV Total energy + Delta-G solvation = -4399.585547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.42493 -41.77137 -40.84467 -39.01776 -38.27639 -35.95569 -35.41578 -34.34461 -34.11152 -32.80304 -30.26758 -28.39885 -28.33335 -27.46765 -26.87604 -26.56348 -25.35478 -22.31826 -22.07610 -20.69832 -20.23557 -19.35788 -19.03436 -18.38376 -17.98002 -17.48558 -17.31272 -17.07899 -17.01557 -16.50870 -16.13449 -15.93715 -15.55152 -15.41015 -14.84445 -14.82459 -14.66090 -14.52051 -14.39096 -13.94302 -13.75538 -13.50777 -13.39523 -13.28435 -13.13602 -13.00638 -12.94760 -12.80654 -12.74468 -12.55486 -12.54269 -12.40004 -12.23111 -12.16986 -11.62915 -11.52930 -11.40780 -11.22589 -10.88794 -10.64728 -10.25780 -9.70014 -8.26838 -6.42890 -0.63676 0.73210 1.24642 1.31009 1.36509 1.48734 1.53827 1.61654 2.00708 2.41932 2.77735 2.92915 2.97713 3.01578 3.24040 3.63198 3.64741 3.73664 3.75128 3.87068 3.89816 4.08706 4.23758 4.34556 4.41599 4.51724 4.60425 4.62089 4.72142 4.74704 4.75115 4.84263 4.85053 4.85756 4.91198 5.06675 5.16790 5.23852 5.24517 5.30566 5.51208 5.74652 5.91292 6.35365 6.62414 6.67592 6.88613 7.30834 7.50010 8.79348 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.002554 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.077743 B =10959.060650 C =12152.895789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 C -0.183 4.183 4 C -0.138 4.138 5 O -0.340 6.340 6 C 0.553 3.447 7 O -0.474 6.474 8 C 0.072 3.928 9 N -0.222 5.222 10 O -0.177 6.177 11 C 0.036 3.964 12 H 0.138 0.862 13 C 0.540 3.460 14 O -0.579 6.579 15 N -0.626 5.626 16 C 0.082 3.918 17 C 0.218 3.782 18 O -0.587 6.587 19 C -0.549 4.549 20 H 0.076 0.924 21 C 0.034 3.966 22 N -0.916 5.916 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.286 1.286 26 H -0.271 1.271 27 C 0.109 3.891 28 C -0.110 4.110 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.390 0.610 41 H 0.276 0.724 42 H 0.054 0.946 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 1.526 21.551 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.069 3.931 3 C -0.240 4.240 4 C -0.195 4.195 5 O -0.256 6.256 6 C 0.394 3.606 7 O -0.359 6.359 8 C -0.122 4.122 9 N 0.033 4.967 10 O -0.199 6.199 11 C -0.025 4.025 12 H 0.156 0.844 13 C 0.327 3.673 14 O -0.459 6.459 15 N -0.359 5.359 16 C -0.040 4.040 17 C 0.176 3.824 18 O -0.400 6.400 19 C -0.587 4.587 20 H 0.094 0.906 21 C -0.166 4.166 22 N -0.557 5.557 23 Si 0.793 3.207 24 H -0.196 1.196 25 H -0.212 1.212 26 H -0.196 1.196 27 C -0.013 4.013 28 C -0.149 4.149 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.247 0.753 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.139 0.861 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.535 -0.339 22.245 22.527 hybrid contribution -0.329 1.564 -1.420 2.138 sum -3.864 1.225 20.825 21.216 Atomic orbital electron populations 1.22518 0.93149 1.03427 1.04981 1.22787 0.95268 0.93226 0.81779 1.22515 1.02099 0.94429 1.04992 1.21913 1.02533 1.01259 0.93780 1.86715 1.69118 1.55590 1.14181 1.19195 0.77510 0.81268 0.82645 1.90850 1.33788 1.23676 1.87545 1.25085 0.96024 0.95664 0.95401 1.78592 1.08220 1.10727 0.99139 1.91417 1.84747 1.33598 1.10090 1.23640 1.00339 0.88522 0.90042 0.84448 1.19698 0.78853 0.84747 0.83955 1.90691 1.56211 1.18382 1.80639 1.49649 1.60162 1.10187 1.15934 1.24266 1.02191 0.77726 0.99855 1.19849 0.81743 0.90887 0.89882 1.86044 1.27438 1.39049 1.87466 1.21633 1.00994 1.01160 1.34889 0.90568 1.25716 0.95708 0.99588 0.95632 1.69307 1.13490 1.26538 1.46370 0.85397 0.78245 0.78455 0.78589 1.19569 1.21221 1.19603 1.23450 0.99339 0.98820 0.79698 1.22819 1.01471 1.05716 0.84929 0.91716 0.91616 0.88198 0.88252 0.91564 0.91561 0.91351 0.91245 0.87421 0.87447 0.91015 0.75348 0.91357 0.92734 0.87050 0.86135 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.37 71.98 0.60 -1.97 16 2 C 0.10 1.58 1.13 -10.79 -0.01 1.56 16 3 C -0.18 -2.53 8.37 71.98 0.60 -1.92 16 4 C -0.14 -1.39 8.85 71.98 0.64 -0.75 16 5 O -0.34 -7.30 9.88 -56.64 -0.56 -7.86 16 6 C 0.55 12.83 7.27 70.26 0.51 13.34 16 7 O -0.47 -11.31 12.50 19.93 0.25 -11.06 16 8 C 0.07 1.82 7.30 45.72 0.33 2.15 16 9 N -0.22 -6.71 12.51 -42.36 -0.53 -7.24 16 10 O -0.18 -6.23 11.82 -20.30 -0.24 -6.47 16 11 C 0.04 1.12 4.07 30.49 0.12 1.24 16 12 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 13 C 0.54 21.06 7.38 87.66 0.65 21.71 16 14 O -0.58 -27.24 17.36 14.97 0.26 -26.98 16 15 N -0.63 -24.05 3.69 -858.26 -3.16 -27.21 16 16 C 0.08 3.04 7.86 83.27 0.65 3.69 16 17 C 0.22 9.68 1.59 -11.12 -0.02 9.67 16 18 O -0.59 -29.14 13.55 -148.98 -2.02 -31.16 16 19 C -0.55 -25.40 8.68 25.60 0.22 -25.18 16 20 H 0.08 3.41 7.81 -2.91 -0.02 3.38 16 21 C 0.03 1.58 5.39 84.66 0.46 2.04 16 22 N -0.92 -43.64 11.01 21.45 0.24 -43.40 16 23 Si 0.97 37.29 29.54 68.60 2.03 39.32 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.29 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 27 C 0.11 4.42 8.02 83.18 0.67 5.09 16 28 C -0.11 -2.69 6.44 30.81 0.20 -2.49 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.19 5.88 -2.39 -0.01 1.18 16 31 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 1.18 5.88 -2.39 -0.01 1.17 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 3.57 8.10 -2.39 -0.02 3.55 16 39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.39 19.66 6.32 -74.06 -0.47 19.19 16 41 H 0.28 12.54 8.31 -92.71 -0.77 11.77 16 42 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.11 3.97 8.10 -2.39 -0.02 3.96 16 44 H 0.12 2.89 7.91 -2.39 -0.02 2.87 16 45 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -61.84 381.79 2.45 -59.39 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.56 Total: 34.49 kcal Atomic # 6 Polarization: 22.55 SS G_CDS: 5.63 Total: 28.18 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -3.46 Total: -77.86 kcal Atomic # 8 Polarization: -81.22 SS G_CDS: -2.31 Total: -83.53 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -61.84 2.45 -59.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362960258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.926 kcal (2) G-P(sol) polarization free energy of solvation -61.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds