Wall clock time and date at job start Sat Apr 11 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 C 1.52996 * 109.47222 * 120.00541 * 2 1 3 5 5 C 1.50701 * 109.46782 * 174.99933 * 4 2 1 6 6 N 1.29519 * 126.14628 * 90.02246 * 5 4 2 7 7 N 1.26253 * 116.57925 * 179.97438 * 6 5 4 8 8 C 1.29885 * 117.66239 * 0.02562 * 7 6 5 9 9 N 1.39068 * 125.65494 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99989 * 0.02562 * 9 8 7 11 11 O 1.21279 * 119.99662 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00132 * 179.97438 * 10 9 8 13 13 N 1.46899 * 109.47126 * 180.02562 * 12 10 9 14 14 C 1.47482 * 110.99995 * 265.97439 * 13 12 10 15 15 C 1.53513 * 87.93004 * 221.29569 * 14 13 12 16 16 O 1.42892 * 114.17183 * 272.37503 * 15 14 13 17 17 C 1.50708 * 114.34001 * 139.68375 * 15 14 13 18 18 H 1.08001 * 119.99436 * 266.07597 * 17 15 14 19 19 C 1.37870 * 119.99688 * 86.07894 * 17 15 14 20 20 N 1.31511 * 120.00291 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99694 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47296 * 89.99707 * 21 19 17 23 23 H 1.48504 * 109.46814 * 209.99835 * 21 19 17 24 24 H 1.48499 * 109.46881 * 329.99678 * 21 19 17 25 25 C 1.47478 * 110.99882 * 170.00185 * 13 12 10 26 26 S 1.71313 * 108.69315 * 359.97438 * 8 7 6 27 27 H 1.09008 * 109.46857 * 299.99587 * 1 2 3 28 28 H 1.09000 * 109.47191 * 59.99214 * 1 2 3 29 29 H 1.08992 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46410 * 240.00478 * 2 1 3 31 31 H 1.08996 * 109.46900 * 60.00025 * 3 2 1 32 32 H 1.08994 * 109.47174 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47226 * 300.00295 * 3 2 1 34 34 H 1.08992 * 109.47498 * 54.99832 * 4 2 1 35 35 H 1.09006 * 109.47031 * 294.99178 * 4 2 1 36 36 H 0.97001 * 120.00489 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.46877 * 300.00380 * 12 10 9 38 38 H 1.09003 * 109.46422 * 60.00197 * 12 10 9 39 39 H 1.09000 * 113.47361 * 336.06311 * 14 13 12 40 40 H 1.09000 * 113.47550 * 106.52966 * 14 13 12 41 41 H 0.96699 * 114.00740 * 273.84322 * 16 15 14 42 42 H 0.97006 * 120.00312 * 180.02562 * 20 19 17 43 43 H 1.08993 * 113.48027 * 253.47206 * 25 13 12 44 44 H 1.09007 * 113.47292 * 23.88049 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.8294 1.1887 6 7 4.3893 0.0330 1.6531 7 7 5.6128 -0.2405 1.5042 8 6 5.9134 -1.3522 0.9036 9 7 7.2003 -1.8153 0.6518 10 6 8.2663 -1.0893 1.0429 11 8 8.1032 -0.0323 1.6149 12 6 9.6609 -1.5913 0.7705 13 7 10.6390 -0.6268 1.2912 14 6 11.0621 0.3167 0.2396 15 6 12.4949 0.1837 0.7746 16 8 12.8136 1.0962 1.8270 17 6 13.5538 0.1163 -0.2957 18 1 13.8994 -0.8422 -0.6537 19 6 14.0812 1.2784 -0.8175 20 7 13.6600 2.4455 -0.3818 21 14 15.3943 1.1949 -2.1436 22 1 14.7477 1.1816 -3.4804 23 1 16.2831 2.3797 -2.0354 24 1 16.1959 -0.0429 -1.9692 25 6 12.0027 -1.1874 1.2590 26 16 4.4618 -2.1536 0.4730 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6055 -1.7198 1.2950 35 1 1.7518 -0.1584 2.1369 36 1 7.3308 -2.6609 0.1947 37 1 9.8030 -2.5537 1.2621 38 1 9.8016 -1.7079 -0.3041 39 1 10.9376 -0.0743 -0.7702 40 1 10.6448 1.3165 0.3598 41 1 13.1233 1.9590 1.5192 42 1 14.0308 3.2631 -0.7493 43 1 12.3826 -1.4623 2.2429 44 1 12.1289 -1.9804 0.5218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364386077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:10 Heat of formation + Delta-G solvation = 24.573432 kcal Electronic energy + Delta-G solvation = -26591.774005 eV Core-core repulsion = 22673.256763 eV Total energy + Delta-G solvation = -3918.517242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43227 -39.98042 -38.73723 -36.97767 -35.16137 -34.30304 -32.07422 -31.46018 -29.94112 -28.06300 -27.44882 -26.36903 -25.21983 -24.96189 -23.24306 -21.69130 -20.64164 -20.05319 -18.99278 -18.67790 -17.76426 -17.19455 -16.69317 -16.30507 -15.39438 -15.31024 -15.04873 -14.94174 -14.70975 -14.37640 -14.26546 -13.83663 -13.70395 -13.56133 -12.91501 -12.70787 -12.64549 -12.33063 -12.08339 -12.01683 -11.71484 -11.56593 -11.42766 -11.26123 -11.19765 -11.05674 -10.90412 -10.75891 -10.67482 -10.39549 -10.31040 -10.02841 -9.80102 -9.59417 -9.32973 -8.83675 -8.68236 -8.26441 -7.94273 -6.28938 -4.39956 0.30244 0.36664 0.99708 2.38444 2.58997 2.87884 3.17113 3.25295 3.27959 3.90017 4.21750 4.31280 4.43242 4.48444 4.68089 4.77764 4.92610 4.98973 5.08585 5.19446 5.23125 5.26308 5.32386 5.41549 5.42711 5.56162 5.61576 5.76293 5.81351 5.87349 5.92484 5.93763 6.07377 6.20948 6.25141 6.62349 6.87516 6.98837 7.11415 7.29770 7.73717 7.80634 7.96242 8.08983 8.59395 8.62360 9.30553 9.69019 10.77130 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.002079 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.231691 B =13464.874238 C =13884.498687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.030 4.030 5 C 0.004 3.996 6 N -0.220 5.220 7 N -0.273 5.273 8 C 0.243 3.757 9 N -0.635 5.635 10 C 0.504 3.496 11 O -0.433 6.433 12 C 0.006 3.994 13 N -0.451 5.451 14 C -0.021 4.021 15 C 0.250 3.750 16 O -0.568 6.568 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.895 5.895 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.004 3.996 26 S 0.084 5.916 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.422 0.578 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.391 0.609 42 H 0.273 0.727 43 H 0.076 0.924 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.639 -12.251 -2.614 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.072 4.072 5 C -0.278 4.278 6 N -0.056 5.056 7 N -0.117 5.117 8 C -0.127 4.127 9 N -0.289 5.289 10 C 0.287 3.713 11 O -0.296 6.296 12 C -0.127 4.127 13 N -0.174 5.174 14 C -0.150 4.150 15 C 0.208 3.792 16 O -0.381 6.381 17 C -0.575 4.575 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.125 4.125 26 S 0.323 5.677 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.260 0.740 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.247 0.753 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.913 -11.218 -1.026 26.433 hybrid contribution 1.136 -0.469 -2.225 2.541 sum -22.777 -11.687 -3.250 25.806 Atomic orbital electron populations 1.21828 0.94170 1.01936 1.02400 1.21143 0.96097 0.97099 0.96816 1.21874 1.01905 0.95030 1.01945 1.20317 0.83679 1.02515 1.00722 1.29849 1.02426 0.92444 1.03103 1.71457 0.94611 1.23777 1.15717 1.71577 1.08784 1.13346 1.17962 1.26038 0.92306 0.94824 0.99514 1.43464 1.00690 1.25389 1.59402 1.21415 0.85803 0.85035 0.79004 1.90867 1.84544 1.19952 1.34227 1.22616 0.90258 0.98934 1.00873 1.68916 1.02896 1.09186 1.36380 1.24846 1.00864 0.97110 0.92194 1.19302 0.89339 0.85410 0.85147 1.86038 1.87927 1.29631 1.34456 1.21539 1.22344 0.93316 1.20289 0.91454 1.25090 0.96326 0.95109 0.96689 1.69305 1.43044 0.97760 1.43400 0.86382 0.81146 0.77946 0.81281 1.20461 1.20859 1.19630 1.24152 0.88266 0.99083 1.00966 1.84648 0.98471 1.25740 1.58819 0.92222 0.92189 0.92482 0.90936 0.92133 0.92221 0.92636 0.89277 0.88102 0.74043 0.88194 0.90602 0.92247 0.90800 0.75305 0.91700 0.90567 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.19 37.16 0.34 -0.36 16 2 C -0.09 -0.61 2.91 -90.62 -0.26 -0.87 16 3 C -0.15 -1.29 9.00 37.16 0.33 -0.95 16 4 C -0.03 -0.21 5.32 -27.88 -0.15 -0.36 16 5 C 0.00 0.05 6.27 -13.25 -0.08 -0.04 16 6 N -0.22 -3.33 10.95 33.58 0.37 -2.97 16 7 N -0.27 -4.78 9.74 29.97 0.29 -4.49 16 8 C 0.24 3.35 8.14 -87.07 -0.71 2.64 16 9 N -0.64 -7.82 5.41 -12.92 -0.07 -7.89 16 10 C 0.50 8.43 7.86 -10.98 -0.09 8.34 16 11 O -0.43 -9.66 15.11 5.56 0.08 -9.58 16 12 C 0.01 0.09 5.30 -4.97 -0.03 0.06 16 13 N -0.45 -9.55 5.82 -246.07 -1.43 -10.98 16 14 C -0.02 -0.50 7.13 -7.54 -0.05 -0.55 16 15 C 0.25 6.34 1.56 -91.24 -0.14 6.20 16 16 O -0.57 -15.84 13.53 -35.23 -0.48 -16.32 16 17 C -0.54 -14.04 8.69 -34.44 -0.30 -14.34 16 18 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 20 N -0.89 -24.24 11.02 55.43 0.61 -23.63 16 21 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 C 0.00 0.08 7.09 -7.54 -0.05 0.03 16 26 S 0.08 0.77 23.31 -107.50 -2.51 -1.73 16 27 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.68 6.84 -51.93 -0.36 0.32 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.42 3.13 8.82 -40.82 -0.36 2.77 16 37 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 38 H 0.08 1.02 7.30 -51.93 -0.38 0.64 16 39 H 0.06 1.31 7.38 -51.93 -0.38 0.93 16 40 H 0.07 1.94 8.14 -51.93 -0.42 1.52 16 41 H 0.39 11.09 6.33 45.56 0.29 11.37 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 44 H 0.07 1.23 7.87 -51.93 -0.41 0.82 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -34.70 379.78 -9.50 -44.20 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.79 Total: 11.00 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.29 Total: 1.56 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.23 Total: -49.94 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.39 Total: -25.90 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.70 -9.50 -44.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364386077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.778 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds