Wall clock time and date at job start Sat Apr 11 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 C 1.52996 * 109.47222 * 120.00541 * 2 1 3 5 5 C 1.50701 * 109.46782 * 174.99933 * 4 2 1 6 6 N 1.29519 * 126.14628 * 90.02246 * 5 4 2 7 7 N 1.26253 * 116.57925 * 179.97438 * 6 5 4 8 8 C 1.29885 * 117.66239 * 0.02562 * 7 6 5 9 9 N 1.39068 * 125.65494 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99989 * 0.02562 * 9 8 7 11 11 O 1.21279 * 119.99662 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00132 * 179.97438 * 10 9 8 13 13 N 1.46899 * 109.47126 * 180.02562 * 12 10 9 14 14 C 1.47482 * 110.99995 * 265.97439 * 13 12 10 15 15 C 1.53513 * 87.93004 * 221.29569 * 14 13 12 16 16 O 1.42892 * 114.17183 * 272.37503 * 15 14 13 17 17 C 1.50708 * 114.34001 * 139.68375 * 15 14 13 18 18 H 1.08001 * 119.99436 * 266.07597 * 17 15 14 19 19 C 1.37870 * 119.99688 * 86.07894 * 17 15 14 20 20 N 1.31511 * 120.00291 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99694 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47296 * 89.99707 * 21 19 17 23 23 H 1.48504 * 109.46814 * 209.99835 * 21 19 17 24 24 H 1.48499 * 109.46881 * 329.99678 * 21 19 17 25 25 C 1.47478 * 110.99882 * 170.00185 * 13 12 10 26 26 S 1.71313 * 108.69315 * 359.97438 * 8 7 6 27 27 H 1.09008 * 109.46857 * 299.99587 * 1 2 3 28 28 H 1.09000 * 109.47191 * 59.99214 * 1 2 3 29 29 H 1.08992 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46410 * 240.00478 * 2 1 3 31 31 H 1.08996 * 109.46900 * 60.00025 * 3 2 1 32 32 H 1.08994 * 109.47174 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47226 * 300.00295 * 3 2 1 34 34 H 1.08992 * 109.47498 * 54.99832 * 4 2 1 35 35 H 1.09006 * 109.47031 * 294.99178 * 4 2 1 36 36 H 0.97001 * 120.00489 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.46877 * 300.00380 * 12 10 9 38 38 H 1.09003 * 109.46422 * 60.00197 * 12 10 9 39 39 H 1.09000 * 113.47361 * 336.06311 * 14 13 12 40 40 H 1.09000 * 113.47550 * 106.52966 * 14 13 12 41 41 H 0.96699 * 114.00740 * 273.84322 * 16 15 14 42 42 H 0.97006 * 120.00312 * 180.02562 * 20 19 17 43 43 H 1.08993 * 113.48027 * 253.47206 * 25 13 12 44 44 H 1.09007 * 113.47292 * 23.88049 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.8294 1.1887 6 7 4.3893 0.0330 1.6531 7 7 5.6128 -0.2405 1.5042 8 6 5.9134 -1.3522 0.9036 9 7 7.2003 -1.8153 0.6518 10 6 8.2663 -1.0893 1.0429 11 8 8.1032 -0.0323 1.6149 12 6 9.6609 -1.5913 0.7705 13 7 10.6390 -0.6268 1.2912 14 6 11.0621 0.3167 0.2396 15 6 12.4949 0.1837 0.7746 16 8 12.8136 1.0962 1.8270 17 6 13.5538 0.1163 -0.2957 18 1 13.8994 -0.8422 -0.6537 19 6 14.0812 1.2784 -0.8175 20 7 13.6600 2.4455 -0.3818 21 14 15.3943 1.1949 -2.1436 22 1 14.7477 1.1816 -3.4804 23 1 16.2831 2.3797 -2.0354 24 1 16.1959 -0.0429 -1.9692 25 6 12.0027 -1.1874 1.2590 26 16 4.4618 -2.1536 0.4730 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6055 -1.7198 1.2950 35 1 1.7518 -0.1584 2.1369 36 1 7.3308 -2.6609 0.1947 37 1 9.8030 -2.5537 1.2621 38 1 9.8016 -1.7079 -0.3041 39 1 10.9376 -0.0743 -0.7702 40 1 10.6448 1.3165 0.3598 41 1 13.1233 1.9590 1.5192 42 1 14.0308 3.2631 -0.7493 43 1 12.3826 -1.4623 2.2429 44 1 12.1289 -1.9804 0.5218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364386077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:10 Heat of formation + Delta-G solvation = -4.308064 kcal Electronic energy + Delta-G solvation = -26593.026401 eV Core-core repulsion = 22673.256763 eV Total energy + Delta-G solvation = -3919.769637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.46351 -41.40105 -40.25699 -37.62292 -36.38334 -36.16342 -34.10387 -32.44010 -31.30397 -29.10780 -28.11008 -27.88919 -26.72201 -26.27675 -24.67944 -22.91444 -21.26278 -21.05153 -20.55439 -20.01932 -19.27293 -18.59768 -17.86482 -17.41032 -17.10462 -16.66754 -16.48958 -16.01855 -15.76239 -15.57945 -15.47897 -15.35942 -14.85006 -14.42455 -14.28295 -13.88363 -13.69737 -13.58787 -13.39073 -13.11536 -13.00806 -12.83886 -12.71056 -12.64351 -12.46205 -12.23391 -12.17933 -11.93833 -11.82938 -11.67364 -11.60028 -11.31062 -11.16346 -10.78713 -10.65503 -10.59069 -10.11032 -9.88079 -9.67619 -8.24765 -6.43773 -0.60938 -0.50845 0.10049 1.28291 1.43090 1.45446 1.56056 1.60626 1.76456 2.37386 2.95335 2.98931 3.24276 3.43704 3.82094 3.91391 3.95713 3.97791 4.02973 4.08310 4.24862 4.31996 4.39660 4.42163 4.54019 4.65759 4.74733 4.79870 4.85413 4.90701 4.91439 5.00178 5.11384 5.14331 5.25550 5.34308 5.37988 5.40961 5.47695 5.74781 5.88828 5.96850 6.26670 6.64431 6.92300 7.30151 7.53950 7.64531 8.80783 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.002079 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.231691 B =13464.874238 C =13884.498687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.151 4.151 4 C -0.034 4.034 5 C 0.008 3.992 6 N -0.267 5.267 7 N -0.331 5.331 8 C 0.207 3.793 9 N -0.615 5.615 10 C 0.508 3.492 11 O -0.503 6.503 12 C 0.006 3.994 13 N -0.475 5.475 14 C -0.009 4.009 15 C 0.214 3.786 16 O -0.587 6.587 17 C -0.550 4.550 18 H 0.078 0.922 19 C 0.019 3.981 20 N -0.926 5.926 21 Si 0.974 3.026 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.262 1.262 25 C 0.021 3.979 26 S 0.191 5.809 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.446 0.554 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.382 0.618 42 H 0.273 0.727 43 H 0.075 0.925 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.347 -16.069 -4.438 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.075 4.075 5 C -0.275 4.275 6 N -0.102 5.102 7 N -0.175 5.175 8 C -0.164 4.164 9 N -0.272 5.272 10 C 0.293 3.707 11 O -0.371 6.371 12 C -0.126 4.126 13 N -0.197 5.197 14 C -0.138 4.138 15 C 0.173 3.827 16 O -0.399 6.399 17 C -0.588 4.588 18 H 0.096 0.904 19 C -0.180 4.180 20 N -0.567 5.567 21 Si 0.799 3.201 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.186 1.186 25 C -0.107 4.107 26 S 0.431 5.569 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.288 0.712 37 H 0.162 0.838 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.237 0.763 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.659 -15.122 -2.874 29.922 hybrid contribution 1.456 0.647 -1.671 2.309 sum -24.203 -14.475 -4.545 28.565 Atomic orbital electron populations 1.21795 0.92228 1.03198 1.02640 1.21130 0.97545 0.95325 0.96658 1.21880 0.99685 0.97065 1.02206 1.20616 0.81223 1.04655 1.01022 1.30659 1.03940 0.92231 1.00683 1.71424 0.94576 1.25813 1.18413 1.71516 1.10467 1.15857 1.19692 1.26282 0.94082 0.95593 1.00406 1.43031 0.99694 1.25700 1.58774 1.21636 0.87122 0.84215 0.77776 1.90856 1.85638 1.22967 1.37670 1.22750 0.87992 0.98913 1.02928 1.68701 1.04219 1.10518 1.36284 1.24587 0.99771 0.95972 0.93509 1.19817 0.90089 0.87391 0.85402 1.86019 1.88146 1.29693 1.36072 1.21866 1.22671 0.93854 1.20436 0.90367 1.25959 0.98444 0.94739 0.98901 1.69420 1.44268 0.98388 1.44622 0.85311 0.78352 0.77942 0.78532 1.19797 1.21171 1.18628 1.24046 0.87608 0.97341 1.01676 1.84167 0.93943 1.22425 1.56318 0.92032 0.92002 0.90678 0.90530 0.92336 0.95549 0.91981 0.85770 0.87956 0.71185 0.83849 0.87666 0.90887 0.95234 0.76307 0.91748 0.90684 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.19 71.98 0.66 -0.28 16 2 C -0.09 -0.97 2.91 -10.79 -0.03 -1.00 16 3 C -0.15 -2.58 9.00 71.98 0.65 -1.93 16 4 C -0.03 -0.39 5.32 29.85 0.16 -0.23 16 5 C 0.01 0.15 6.27 88.45 0.55 0.71 16 6 N -0.27 -8.35 10.95 -47.67 -0.52 -8.88 16 7 N -0.33 -12.07 9.74 -59.10 -0.58 -12.65 16 8 C 0.21 5.57 8.14 179.11 1.46 7.02 16 9 N -0.62 -14.31 5.41 -313.16 -1.69 -16.00 16 10 C 0.51 16.85 7.86 87.66 0.69 17.54 16 11 O -0.50 -23.56 15.11 -3.03 -0.05 -23.61 16 12 C 0.01 0.17 5.30 85.56 0.45 0.63 16 13 N -0.47 -19.96 5.82 -932.81 -5.43 -25.39 16 14 C -0.01 -0.42 7.13 83.58 0.60 0.17 16 15 C 0.21 11.02 1.56 -11.19 -0.02 11.00 16 16 O -0.59 -34.19 13.53 -148.98 -2.02 -36.21 16 17 C -0.55 -28.67 8.69 25.60 0.22 -28.44 16 18 H 0.08 3.79 7.81 -2.91 -0.02 3.77 16 19 C 0.02 0.98 5.39 84.65 0.46 1.44 16 20 N -0.93 -51.70 11.02 21.44 0.24 -51.47 16 21 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 C 0.02 0.87 7.09 83.58 0.59 1.47 16 26 S 0.19 2.99 23.31 -56.49 -1.32 1.67 16 27 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.03 0.62 6.84 -2.39 -0.02 0.60 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.45 5.25 8.82 -92.71 -0.82 4.43 16 37 H 0.14 2.88 8.08 -2.39 -0.02 2.86 16 38 H 0.11 2.46 7.30 -2.39 -0.02 2.45 16 39 H 0.07 3.21 7.38 -2.39 -0.02 3.20 16 40 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.38 22.95 6.33 -74.06 -0.47 22.48 16 42 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 43 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 44 H 0.10 3.37 7.87 -2.38 -0.02 3.35 16 Total: -1.00 -82.88 379.78 -3.14 -86.02 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.24 Total: 35.25 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.44 Total: 8.09 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -7.98 Total: -114.38 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -2.06 Total: -59.81 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.32 Total: 1.67 kcal Total: -82.88 -3.14 -86.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364386077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.709 kcal (2) G-P(sol) polarization free energy of solvation -82.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds