Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46935 * 2 1 4 4 C 1.53002 * 109.47156 * 240.00203 * 2 1 3 5 5 C 1.50704 * 109.47257 * 120.00024 * 2 1 3 6 6 N 1.29523 * 126.14366 * 59.97585 * 5 2 1 7 7 N 1.26243 * 116.57759 * 179.97438 * 6 5 2 8 8 C 1.29898 * 117.66186 * 359.97438 * 7 6 5 9 9 N 1.39072 * 125.65151 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00196 * 0.02562 * 9 8 7 11 11 O 1.21290 * 120.00187 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00164 * 179.97438 * 10 9 8 13 13 N 1.46904 * 109.47392 * 180.02562 * 12 10 9 14 14 C 1.47960 * 110.99975 * 190.00152 * 13 12 10 15 15 C 1.53940 * 86.18020 * 222.41827 * 14 13 12 16 16 O 1.42900 * 113.73337 * 269.26005 * 15 14 13 17 17 C 1.50694 * 113.73364 * 138.08016 * 15 14 13 18 18 H 1.08000 * 120.00563 * 1.89939 * 17 15 14 19 19 C 1.37885 * 119.99902 * 181.90102 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.48189 * 111.06803 * 90.56563 * 13 12 10 26 26 S 1.71305 * 108.69333 * 0.24475 * 8 7 6 27 27 H 1.08997 * 109.47150 * 299.99416 * 1 2 3 28 28 H 1.08995 * 109.47363 * 60.00443 * 1 2 3 29 29 H 1.09007 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46836 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46954 * 299.99621 * 3 2 1 32 32 H 1.08991 * 109.47170 * 60.00232 * 3 2 1 33 33 H 1.08997 * 109.47167 * 299.99584 * 4 2 1 34 34 H 1.08995 * 109.47512 * 59.99445 * 4 2 1 35 35 H 1.08999 * 109.47278 * 180.02562 * 4 2 1 36 36 H 0.97002 * 119.99940 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.46888 * 60.00332 * 12 10 9 38 38 H 1.09005 * 109.47315 * 300.00654 * 12 10 9 39 39 H 1.09000 * 113.75922 * 108.10132 * 14 13 12 40 40 H 1.08996 * 113.85941 * 336.74802 * 14 13 12 41 41 H 0.96699 * 113.99865 * 178.10203 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.08996 * 113.76245 * 23.24297 * 25 13 12 44 44 H 1.08999 * 113.82580 * 251.80952 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7936 -1.9421 1.5525 7 7 2.3079 -2.3542 2.6292 8 6 3.0257 -1.5159 3.3143 9 7 3.6658 -1.7915 4.5178 10 6 3.5679 -3.0180 5.0677 11 8 2.9221 -3.8817 4.5127 12 6 4.2620 -3.3168 6.3716 13 7 4.0036 -4.7110 6.7556 14 6 4.4637 -4.9745 8.1370 15 6 5.0146 -6.3039 7.5902 16 8 4.0862 -7.3873 7.6698 17 6 6.3792 -6.6594 8.1216 18 1 6.8619 -6.0171 8.8434 19 6 7.0116 -7.8047 7.6864 20 7 6.4237 -8.5871 6.8078 21 14 8.7034 -8.2450 8.3446 22 1 9.1609 -9.5144 7.7244 23 1 9.6610 -7.1590 8.0147 24 1 8.6330 -8.4120 9.8185 25 6 5.0458 -5.6146 6.2140 26 16 3.0470 -0.0125 2.4934 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7216 -1.2491 36 1 4.1826 -1.1009 4.9616 37 1 3.8828 -2.6501 7.1461 38 1 5.3351 -3.1652 6.2551 39 1 3.6522 -5.0973 8.8543 40 1 5.2365 -4.2880 8.4828 41 1 4.4179 -8.2173 7.3009 42 1 6.8688 -9.3926 6.5014 43 1 5.9893 -5.1151 5.9944 44 1 4.6985 -6.2480 5.3977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364401072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = 24.440799 kcal Electronic energy + Delta-G solvation = -26832.819328 eV Core-core repulsion = 22914.296335 eV Total energy + Delta-G solvation = -3918.522993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42764 -39.92347 -38.60928 -37.39083 -35.08057 -34.23556 -32.09129 -30.65310 -29.36158 -27.83367 -27.63962 -26.78364 -25.80594 -25.13452 -23.47937 -22.08104 -20.67600 -19.86899 -18.75852 -18.53886 -17.61423 -17.10674 -16.65588 -16.26910 -15.38443 -15.35897 -15.00644 -14.80257 -14.44832 -14.33010 -14.22532 -13.80350 -13.73704 -13.48837 -12.77455 -12.76838 -12.56621 -12.14011 -12.08760 -12.06445 -12.02618 -11.62903 -11.54647 -11.44153 -11.22280 -11.14645 -10.87023 -10.76086 -10.58932 -10.42458 -10.27963 -10.05968 -9.80093 -9.56326 -9.35031 -8.81433 -8.65859 -8.28054 -7.85365 -6.26638 -4.37842 0.33561 0.39263 1.03226 2.41621 2.61245 2.90594 3.19296 3.25829 3.27112 3.77896 4.23114 4.29202 4.38746 4.45549 4.71940 4.75142 4.96886 5.02492 5.10139 5.20236 5.20596 5.26875 5.34944 5.44107 5.45236 5.49959 5.55700 5.67923 5.81134 5.87369 5.91029 5.93812 5.96267 6.25056 6.28925 6.62577 6.90069 7.03414 7.11707 7.31655 7.74179 7.82240 7.97784 8.11284 8.62376 8.63766 9.32371 9.63300 10.79288 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.002115 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.274780 B =13238.431876 C =13330.802534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.021 3.979 3 C -0.152 4.152 4 C -0.137 4.137 5 C 0.010 3.990 6 N -0.222 5.222 7 N -0.272 5.272 8 C 0.238 3.762 9 N -0.635 5.635 10 C 0.504 3.496 11 O -0.434 6.434 12 C 0.007 3.993 13 N -0.460 5.460 14 C 0.010 3.990 15 C 0.247 3.753 16 O -0.570 6.570 17 C -0.541 4.541 18 H 0.065 0.935 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.285 1.285 23 H -0.276 1.276 24 H -0.274 1.274 25 C -0.010 4.010 26 S 0.090 5.910 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.422 0.578 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.389 0.611 42 H 0.272 0.728 43 H 0.060 0.940 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 23.675 -11.806 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 C -0.210 4.210 4 C -0.196 4.196 5 C -0.273 4.273 6 N -0.056 5.056 7 N -0.116 5.116 8 C -0.132 4.132 9 N -0.289 5.289 10 C 0.287 3.713 11 O -0.297 6.297 12 C -0.125 4.125 13 N -0.183 5.183 14 C -0.118 4.118 15 C 0.205 3.795 16 O -0.381 6.381 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.534 5.534 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.201 1.201 24 H -0.199 1.199 25 C -0.139 4.139 26 S 0.331 5.669 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.259 0.741 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.243 0.757 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.593 22.756 -12.069 26.589 hybrid contribution 2.548 0.027 0.501 2.597 sum -4.045 22.783 -11.567 25.870 Atomic orbital electron populations 1.21886 0.91932 1.03453 1.02315 1.19146 0.96624 0.94023 0.88593 1.22056 1.01702 0.94019 1.03259 1.21888 1.01385 1.01279 0.95068 1.29931 1.02068 0.93936 1.01352 1.71366 1.16810 1.09839 1.07608 1.71606 1.11446 1.26927 1.01638 1.26091 0.98637 0.93860 0.94647 1.43456 1.50901 1.16036 1.18517 1.21447 0.81988 0.80438 0.87423 1.90866 1.35265 1.43443 1.60123 1.22586 0.99110 0.97535 0.93282 1.68533 1.43487 1.00421 1.05891 1.24205 0.98399 0.98256 0.90985 1.19688 0.87141 0.83851 0.88799 1.86051 1.44069 1.23038 1.84948 1.21569 1.01456 1.08713 1.26229 0.91648 1.25082 0.98444 0.95711 0.93930 1.69430 1.39033 1.14369 1.30524 0.86468 0.83268 0.77829 0.79337 1.21011 1.20126 1.19934 1.24875 0.90893 0.95429 1.02696 1.84605 1.51371 1.12250 1.18698 0.92337 0.91257 0.91211 0.91793 0.90550 0.91815 0.91205 0.91253 0.92305 0.74078 0.88252 0.90736 0.90196 0.91419 0.75695 0.91773 0.92217 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.46 37.15 0.31 -0.66 16 2 C 0.02 0.16 0.99 -155.66 -0.15 0.01 16 3 C -0.15 -0.80 7.60 37.16 0.28 -0.52 16 4 C -0.14 -1.00 8.46 37.16 0.31 -0.69 16 5 C 0.01 0.11 6.10 -13.25 -0.08 0.03 16 6 N -0.22 -3.45 11.65 33.58 0.39 -3.06 16 7 N -0.27 -4.86 9.74 29.97 0.29 -4.57 16 8 C 0.24 3.35 8.14 -87.06 -0.71 2.64 16 9 N -0.63 -7.97 5.41 -12.92 -0.07 -8.04 16 10 C 0.50 8.51 7.84 -10.99 -0.09 8.42 16 11 O -0.43 -9.74 15.11 5.55 0.08 -9.65 16 12 C 0.01 0.12 5.28 -4.97 -0.03 0.09 16 13 N -0.46 -9.74 5.65 -239.46 -1.35 -11.09 16 14 C 0.01 0.21 7.34 -2.76 -0.02 0.19 16 15 C 0.25 6.25 1.40 -90.83 -0.13 6.12 16 16 O -0.57 -15.79 13.48 -35.23 -0.48 -16.27 16 17 C -0.54 -14.21 8.61 -34.44 -0.30 -14.50 16 18 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.07 1.87 5.40 -17.82 -0.10 1.77 16 20 N -0.89 -24.25 11.20 55.43 0.62 -23.63 16 21 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.01 -0.24 7.36 -2.63 -0.02 -0.26 16 26 S 0.09 0.86 21.98 -107.50 -2.36 -1.50 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 0.33 8.01 -51.93 -0.42 -0.09 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 8.00 -51.93 -0.42 -0.09 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.42 3.23 8.82 -40.82 -0.36 2.87 16 37 H 0.10 1.22 8.08 -51.93 -0.42 0.80 16 38 H 0.07 1.03 7.39 -51.93 -0.38 0.64 16 39 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 41 H 0.39 10.94 6.60 45.56 0.30 11.24 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.06 1.35 7.44 -51.93 -0.39 0.96 16 44 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -34.77 379.65 -8.72 -43.49 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.84 Total: 10.76 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.71 Total: 2.64 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.12 Total: -50.38 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.39 Total: -25.92 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.36 Total: -1.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.77 -8.72 -43.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364401072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.931 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds