Wall clock time and date at job start Sat Apr 11 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46935 * 2 1 4 4 C 1.53002 * 109.47156 * 240.00203 * 2 1 3 5 5 C 1.50704 * 109.47257 * 120.00024 * 2 1 3 6 6 N 1.29523 * 126.14366 * 59.97585 * 5 2 1 7 7 N 1.26243 * 116.57759 * 179.97438 * 6 5 2 8 8 C 1.29898 * 117.66186 * 359.97438 * 7 6 5 9 9 N 1.39072 * 125.65151 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00196 * 0.02562 * 9 8 7 11 11 O 1.21290 * 120.00187 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00164 * 179.97438 * 10 9 8 13 13 N 1.46904 * 109.47392 * 180.02562 * 12 10 9 14 14 C 1.47960 * 110.99975 * 190.00152 * 13 12 10 15 15 C 1.53940 * 86.18020 * 222.41827 * 14 13 12 16 16 O 1.42900 * 113.73337 * 269.26005 * 15 14 13 17 17 C 1.50694 * 113.73364 * 138.08016 * 15 14 13 18 18 H 1.08000 * 120.00563 * 1.89939 * 17 15 14 19 19 C 1.37885 * 119.99902 * 181.90102 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.48189 * 111.06803 * 90.56563 * 13 12 10 26 26 S 1.71305 * 108.69333 * 0.24475 * 8 7 6 27 27 H 1.08997 * 109.47150 * 299.99416 * 1 2 3 28 28 H 1.08995 * 109.47363 * 60.00443 * 1 2 3 29 29 H 1.09007 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46836 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46954 * 299.99621 * 3 2 1 32 32 H 1.08991 * 109.47170 * 60.00232 * 3 2 1 33 33 H 1.08997 * 109.47167 * 299.99584 * 4 2 1 34 34 H 1.08995 * 109.47512 * 59.99445 * 4 2 1 35 35 H 1.08999 * 109.47278 * 180.02562 * 4 2 1 36 36 H 0.97002 * 119.99940 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.46888 * 60.00332 * 12 10 9 38 38 H 1.09005 * 109.47315 * 300.00654 * 12 10 9 39 39 H 1.09000 * 113.75922 * 108.10132 * 14 13 12 40 40 H 1.08996 * 113.85941 * 336.74802 * 14 13 12 41 41 H 0.96699 * 113.99865 * 178.10203 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.08996 * 113.76245 * 23.24297 * 25 13 12 44 44 H 1.08999 * 113.82580 * 251.80952 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7936 -1.9421 1.5525 7 7 2.3079 -2.3542 2.6292 8 6 3.0257 -1.5159 3.3143 9 7 3.6658 -1.7915 4.5178 10 6 3.5679 -3.0180 5.0677 11 8 2.9221 -3.8817 4.5127 12 6 4.2620 -3.3168 6.3716 13 7 4.0036 -4.7110 6.7556 14 6 4.4637 -4.9745 8.1370 15 6 5.0146 -6.3039 7.5902 16 8 4.0862 -7.3873 7.6698 17 6 6.3792 -6.6594 8.1216 18 1 6.8619 -6.0171 8.8434 19 6 7.0116 -7.8047 7.6864 20 7 6.4237 -8.5871 6.8078 21 14 8.7034 -8.2450 8.3446 22 1 9.1609 -9.5144 7.7244 23 1 9.6610 -7.1590 8.0147 24 1 8.6330 -8.4120 9.8185 25 6 5.0458 -5.6146 6.2140 26 16 3.0470 -0.0125 2.4934 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7216 -1.2491 36 1 4.1826 -1.1009 4.9616 37 1 3.8828 -2.6501 7.1461 38 1 5.3351 -3.1652 6.2551 39 1 3.6522 -5.0973 8.8543 40 1 5.2365 -4.2880 8.4828 41 1 4.4179 -8.2173 7.3009 42 1 6.8688 -9.3926 6.5014 43 1 5.9893 -5.1151 5.9944 44 1 4.6985 -6.2480 5.3977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364401072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:13 Heat of formation + Delta-G solvation = -4.599496 kcal Electronic energy + Delta-G solvation = -26834.078610 eV Core-core repulsion = 22914.296335 eV Total energy + Delta-G solvation = -3919.782275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.48389 -41.31411 -40.17152 -38.09639 -36.32750 -36.10156 -34.12735 -31.92097 -30.66654 -28.36370 -28.26483 -28.21229 -27.12954 -26.89800 -24.90045 -23.33595 -21.64581 -20.88016 -20.52617 -19.65467 -19.22405 -18.43225 -17.79145 -17.41083 -17.09010 -16.70999 -16.45799 -16.09481 -15.80008 -15.52655 -15.35746 -14.94626 -14.91143 -14.37909 -14.23930 -13.89248 -13.67880 -13.38675 -13.28423 -13.16589 -12.96081 -12.81991 -12.65782 -12.63714 -12.61454 -12.45355 -12.25174 -12.04544 -11.99282 -11.91808 -11.56989 -11.28827 -11.19105 -10.77466 -10.64117 -10.63314 -10.15849 -9.88960 -9.57658 -8.23243 -6.42558 -0.61466 -0.51524 0.10088 1.28258 1.43433 1.45526 1.53590 1.60204 1.76335 2.37697 2.90269 2.97427 3.14061 3.38898 3.75520 3.90081 3.90939 4.00123 4.04855 4.11601 4.26042 4.32721 4.39542 4.44617 4.56347 4.72303 4.73592 4.82576 4.86071 4.90348 4.95316 4.95866 5.01794 5.14466 5.23343 5.33816 5.36291 5.37965 5.41252 5.74078 5.90018 5.98573 6.25892 6.64690 6.92497 7.31041 7.48785 7.63777 8.81634 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.002115 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.274780 B =13238.431876 C =13330.802534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.016 3.984 3 C -0.151 4.151 4 C -0.136 4.136 5 C 0.010 3.990 6 N -0.268 5.268 7 N -0.331 5.331 8 C 0.202 3.798 9 N -0.615 5.615 10 C 0.507 3.493 11 O -0.503 6.503 12 C 0.008 3.992 13 N -0.481 5.481 14 C 0.027 3.973 15 C 0.214 3.786 16 O -0.588 6.588 17 C -0.556 4.556 18 H 0.076 0.924 19 C 0.021 3.979 20 N -0.923 5.923 21 Si 0.971 3.029 22 H -0.287 1.287 23 H -0.265 1.265 24 H -0.270 1.270 25 C 0.001 3.999 26 S 0.196 5.804 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.445 0.555 37 H 0.144 0.856 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.380 0.620 42 H 0.271 0.729 43 H 0.069 0.931 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 27.990 -11.626 30.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.011 3.989 3 C -0.209 4.209 4 C -0.195 4.195 5 C -0.273 4.273 6 N -0.103 5.103 7 N -0.175 5.175 8 C -0.168 4.168 9 N -0.272 5.272 10 C 0.292 3.708 11 O -0.371 6.371 12 C -0.124 4.124 13 N -0.204 5.204 14 C -0.101 4.101 15 C 0.173 3.827 16 O -0.398 6.398 17 C -0.594 4.594 18 H 0.094 0.906 19 C -0.179 4.179 20 N -0.564 5.564 21 Si 0.796 3.204 22 H -0.213 1.213 23 H -0.189 1.189 24 H -0.195 1.195 25 C -0.128 4.128 26 S 0.439 5.561 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.288 0.712 37 H 0.161 0.839 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.233 0.767 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.106 27.164 -11.873 30.082 hybrid contribution 2.030 -1.137 0.325 2.349 sum -3.077 26.027 -11.547 28.639 Atomic orbital electron populations 1.21890 0.91495 1.02314 1.03722 1.19458 0.97010 0.95341 0.87064 1.22097 1.01996 0.91927 1.04872 1.21895 1.01263 1.00242 0.96099 1.30814 1.00649 0.93337 1.02493 1.71336 1.18831 1.12178 1.07944 1.71548 1.13042 1.29888 1.02976 1.26353 0.99073 0.96237 0.95181 1.43036 1.50534 1.15441 1.18144 1.21675 0.80828 0.80852 0.87446 1.90856 1.38416 1.45866 1.61986 1.22720 1.00875 0.94910 0.93895 1.68313 1.42928 1.03543 1.05654 1.24136 0.98970 0.96106 0.90882 1.20196 0.87206 0.84721 0.90532 1.86035 1.45294 1.23464 1.85043 1.21901 1.01967 1.09155 1.26343 0.90629 1.25931 1.02159 0.95725 0.94096 1.69554 1.40473 1.14711 1.31665 0.85412 0.78885 0.77522 0.78615 1.21285 1.18946 1.19466 1.24576 0.91844 0.95967 1.00454 1.84118 1.48945 1.07550 1.15535 0.92296 0.88447 0.93669 0.91336 0.88072 0.91196 0.93693 0.88418 0.92467 0.71216 0.83863 0.87942 0.90190 0.88053 0.76689 0.91897 0.91289 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.46 71.98 0.61 -1.14 16 2 C 0.02 0.22 0.99 -52.93 -0.05 0.17 16 3 C -0.15 -1.03 7.60 71.98 0.55 -0.48 16 4 C -0.14 -1.82 8.46 71.98 0.61 -1.21 16 5 C 0.01 0.22 6.10 88.45 0.54 0.76 16 6 N -0.27 -8.71 11.65 -47.67 -0.56 -9.26 16 7 N -0.33 -12.32 9.74 -59.09 -0.58 -12.89 16 8 C 0.20 5.59 8.14 179.10 1.46 7.05 16 9 N -0.62 -14.66 5.41 -313.16 -1.69 -16.35 16 10 C 0.51 17.03 7.84 87.66 0.69 17.71 16 11 O -0.50 -23.68 15.11 -3.06 -0.05 -23.73 16 12 C 0.01 0.23 5.28 85.56 0.45 0.68 16 13 N -0.48 -20.24 5.65 -914.72 -5.17 -25.40 16 14 C 0.03 1.10 7.34 86.41 0.63 1.73 16 15 C 0.21 10.99 1.40 -10.89 -0.02 10.98 16 16 O -0.59 -33.92 13.48 -148.98 -2.01 -35.93 16 17 C -0.56 -29.01 8.61 25.60 0.22 -28.79 16 18 H 0.08 3.69 7.81 -2.91 -0.02 3.67 16 19 C 0.02 1.08 5.40 84.66 0.46 1.54 16 20 N -0.92 -51.59 11.20 21.45 0.24 -51.35 16 21 Si 0.97 41.29 29.54 68.60 2.03 43.32 16 22 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 C 0.00 0.05 7.36 86.37 0.64 0.69 16 26 S 0.20 3.28 21.98 -56.49 -1.24 2.04 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.43 8.01 -2.39 -0.02 0.41 16 31 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.07 0.42 8.00 -2.39 -0.02 0.40 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.45 5.51 8.82 -92.71 -0.82 4.69 16 37 H 0.14 2.91 8.08 -2.39 -0.02 2.89 16 38 H 0.10 2.47 7.39 -2.38 -0.02 2.45 16 39 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.10 3.38 7.88 -2.39 -0.02 3.36 16 41 H 0.38 22.63 6.60 -74.06 -0.49 22.14 16 42 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.07 3.13 7.44 -2.39 -0.02 3.11 16 44 H 0.03 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -82.73 379.65 -2.51 -85.24 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.27 Total: 34.64 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.78 Total: 9.67 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -7.75 Total: -115.25 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -2.06 Total: -59.65 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.24 Total: 2.04 kcal Total: -82.73 -2.51 -85.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364401072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.637 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds