Wall clock time and date at job start Sat Apr 11 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47347 * 2 1 4 4 C 1.53005 * 109.47006 * 239.99708 * 2 1 3 5 5 C 1.50706 * 109.47021 * 120.00148 * 2 1 3 6 6 N 1.29507 * 126.14081 * 59.97206 * 5 2 1 7 7 N 1.26251 * 116.57506 * 180.02562 * 6 5 2 8 8 C 1.29883 * 117.66320 * 359.97438 * 7 6 5 9 9 N 1.39081 * 125.65260 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00225 * 0.02562 * 9 8 7 11 11 O 1.21587 * 120.00063 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00483 * 179.97438 * 10 9 8 13 13 C 1.47028 * 125.64307 * 0.03239 * 12 10 9 14 14 C 1.54320 * 107.26701 * 178.89770 * 13 12 10 15 15 C 1.55153 * 102.94383 * 337.80525 * 14 13 12 16 16 O 1.42895 * 111.00660 * 277.38826 * 15 14 13 17 17 C 1.50702 * 111.00367 * 153.57571 * 15 14 13 18 18 H 1.08002 * 120.00299 * 3.18452 * 17 15 14 19 19 C 1.37884 * 119.99942 * 182.90010 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47463 * 125.63121 * 179.97438 * 12 10 9 26 26 S 1.71309 * 108.69324 * 0.24464 * 8 7 6 27 27 H 1.08994 * 109.47068 * 300.00331 * 1 2 3 28 28 H 1.08999 * 109.46515 * 59.99969 * 1 2 3 29 29 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46699 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46653 * 299.99823 * 3 2 1 32 32 H 1.08993 * 109.46828 * 60.00034 * 3 2 1 33 33 H 1.08997 * 109.46995 * 300.00322 * 4 2 1 34 34 H 1.09000 * 109.46644 * 60.00262 * 4 2 1 35 35 H 1.09002 * 109.46779 * 180.02562 * 4 2 1 36 36 H 0.97000 * 120.00210 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.88086 * 59.48194 * 13 12 10 38 38 H 1.09003 * 109.87956 * 298.31182 * 13 12 10 39 39 H 1.09004 * 110.71836 * 219.43859 * 14 13 12 40 40 H 1.09006 * 110.72351 * 96.16930 * 14 13 12 41 41 H 0.96695 * 114.00567 * 176.81707 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.34826 * 85.33075 * 25 12 10 44 44 H 1.09002 * 110.40574 * 322.99292 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2305 6 7 1.7935 -1.9419 1.5524 7 7 2.3070 -2.3539 2.6297 8 6 3.0240 -1.5155 3.3152 9 7 3.6631 -1.7908 4.5194 10 6 3.5650 -3.0173 5.0694 11 8 2.9182 -3.8833 4.5127 12 7 4.1847 -3.2843 6.2362 13 6 4.9959 -2.3349 7.0124 14 6 5.4762 -3.0723 8.2800 15 6 4.4428 -4.2203 8.4269 16 8 3.2570 -3.7617 9.0791 17 6 5.0397 -5.3939 9.1601 18 1 6.0459 -5.3334 9.5478 19 6 4.2991 -6.5427 9.3412 20 7 3.0738 -6.6164 8.8691 21 14 5.0362 -7.9945 10.2567 22 1 6.4186 -7.6602 10.6838 23 1 4.2089 -8.2976 11.4522 24 1 5.0669 -9.1798 9.3626 25 6 4.1603 -4.5767 6.9458 26 16 3.0458 -0.0122 2.4941 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9562 0.8899 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 4.1795 -1.1001 4.9635 37 1 4.3907 -1.4725 7.2920 38 1 5.8544 -2.0127 6.4231 39 1 5.4441 -2.4113 9.1462 40 1 6.4798 -3.4729 8.1363 41 1 2.5630 -4.4313 9.1501 42 1 2.5529 -7.4248 8.9961 43 1 4.9373 -5.2362 6.5591 44 1 3.1809 -5.0452 6.8485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365763564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:28 Heat of formation + Delta-G solvation = -8.015146 kcal Electronic energy + Delta-G solvation = -27376.352088 eV Core-core repulsion = 23456.421700 eV Total energy + Delta-G solvation = -3919.930388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29154 -39.90201 -37.78483 -37.18392 -34.83996 -34.35146 -32.23364 -30.60338 -29.59631 -27.95451 -27.74777 -27.56771 -26.40400 -24.99574 -23.24806 -21.97978 -20.33410 -19.95823 -19.58667 -18.31624 -17.70035 -17.17799 -16.86494 -16.13862 -15.35424 -15.19861 -15.08869 -14.64796 -14.43218 -14.33647 -14.19638 -13.57126 -13.36345 -13.13749 -12.92258 -12.69552 -12.63125 -12.29376 -12.02064 -12.01510 -11.76496 -11.70244 -11.46437 -11.36297 -11.11573 -11.03620 -10.87534 -10.70636 -10.51015 -10.45050 -10.24457 -10.18076 -9.67797 -9.58653 -9.45313 -8.74992 -8.69342 -8.44649 -7.87424 -6.32516 -4.42536 0.48669 0.49929 1.15873 2.58578 2.67016 3.18118 3.27241 3.29977 3.55064 3.80755 4.04521 4.23957 4.42251 4.53560 4.75482 4.90498 4.95663 5.17653 5.24872 5.27859 5.30785 5.41722 5.49085 5.51220 5.57070 5.63852 5.64075 5.75155 5.86673 5.95141 5.97988 5.98926 6.10889 6.39913 6.53883 6.69674 6.77456 6.99745 7.20601 7.32995 7.70020 7.94849 8.13930 8.60909 8.68376 8.85753 9.26321 9.35910 10.74780 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.002370 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.218445 B =11813.097444 C =12313.704184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.022 3.978 3 C -0.152 4.152 4 C -0.137 4.137 5 C 0.005 3.995 6 N -0.220 5.220 7 N -0.271 5.271 8 C 0.260 3.740 9 N -0.635 5.635 10 C 0.706 3.294 11 O -0.529 6.529 12 N -0.618 5.618 13 C 0.097 3.903 14 C -0.115 4.115 15 C 0.249 3.751 16 O -0.583 6.583 17 C -0.539 4.539 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.892 5.892 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.111 3.889 26 S 0.088 5.912 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.417 0.583 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.385 0.615 42 H 0.271 0.729 43 H 0.063 0.937 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 18.129 -15.098 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 C -0.210 4.210 4 C -0.196 4.196 5 C -0.279 4.279 6 N -0.055 5.055 7 N -0.115 5.115 8 C -0.112 4.112 9 N -0.290 5.290 10 C 0.406 3.594 11 O -0.400 6.400 12 N -0.355 5.355 13 C -0.026 4.026 14 C -0.152 4.152 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.530 5.530 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.010 4.010 26 S 0.328 5.672 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.236 0.764 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.367 17.478 -15.374 23.280 hybrid contribution 0.400 -1.013 0.849 1.381 sum 0.767 16.465 -14.525 21.969 Atomic orbital electron populations 1.21886 0.92019 1.03415 1.02267 1.19120 0.96557 0.93985 0.88605 1.22052 1.01680 0.94078 1.03210 1.21884 1.01338 1.01242 0.95089 1.29868 1.02574 0.94014 1.01400 1.71360 1.16641 1.09846 1.07682 1.71633 1.11616 1.26734 1.01540 1.25682 0.98079 0.93657 0.93746 1.42284 1.52442 1.14943 1.19308 1.15567 0.81277 0.81450 0.81142 1.91069 1.43266 1.44063 1.61582 1.48023 1.51352 1.16204 1.19965 1.22077 0.93623 0.92923 0.93952 1.22595 0.99524 0.98220 0.94910 1.19629 0.82888 0.89968 0.86665 1.86073 1.28170 1.44013 1.81030 1.21485 1.01153 0.98055 1.36997 0.91334 1.25102 0.94822 0.98841 0.94524 1.69655 1.09261 1.29259 1.44847 0.86327 0.79330 0.81695 0.79426 1.19570 1.20722 1.20720 1.23349 1.03184 0.81249 0.93216 1.84572 1.51731 1.12153 1.18719 0.92307 0.91361 0.91238 0.91811 0.90643 0.91794 0.91251 0.91359 0.92342 0.74496 0.92308 0.92757 0.90492 0.90185 0.76401 0.91864 0.91910 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.46 37.16 0.31 -0.77 16 2 C 0.02 0.19 0.99 -155.65 -0.15 0.03 16 3 C -0.15 -0.91 7.60 37.16 0.28 -0.63 16 4 C -0.14 -1.06 8.46 37.16 0.31 -0.74 16 5 C 0.00 0.06 6.10 -13.26 -0.08 -0.02 16 6 N -0.22 -3.66 11.65 33.58 0.39 -3.26 16 7 N -0.27 -5.26 9.73 29.97 0.29 -4.96 16 8 C 0.26 4.18 8.14 -87.06 -0.71 3.47 16 9 N -0.64 -10.08 5.37 -17.32 -0.09 -10.17 16 10 C 0.71 14.60 8.45 -86.92 -0.73 13.87 16 11 O -0.53 -13.36 15.28 5.29 0.08 -13.28 16 12 N -0.62 -12.45 3.33 -176.18 -0.59 -13.03 16 13 C 0.10 1.57 6.15 -3.06 -0.02 1.55 16 14 C -0.11 -2.13 6.13 -24.90 -0.15 -2.28 16 15 C 0.25 5.84 0.88 -89.61 -0.08 5.76 16 16 O -0.58 -14.56 13.17 -35.23 -0.46 -15.02 16 17 C -0.54 -13.62 8.25 -34.44 -0.28 -13.91 16 18 H 0.07 1.69 7.78 -52.49 -0.41 1.29 16 19 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 20 N -0.89 -23.60 10.69 55.43 0.59 -23.01 16 21 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.11 2.63 5.52 -2.49 -0.01 2.62 16 26 S 0.09 0.96 21.98 -107.50 -2.36 -1.40 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.37 8.01 -51.93 -0.42 -0.05 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 8.00 -51.93 -0.42 -0.04 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.42 4.93 7.81 -40.82 -0.32 4.61 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.39 8.03 -51.93 -0.42 0.98 16 41 H 0.38 10.02 7.24 45.56 0.33 10.35 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.06 1.52 8.03 -51.93 -0.42 1.10 16 44 H 0.09 2.35 7.48 -51.93 -0.39 1.96 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -32.54 374.57 -8.75 -41.29 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.81 Total: 11.45 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -1.41 Total: 10.67 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.60 Total: -54.44 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.38 Total: -28.30 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.36 Total: -1.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.54 -8.75 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365763564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.274 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds