Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46929 * 2 1 4 4 C 1.52998 * 109.47333 * 239.99860 * 2 1 3 5 5 C 1.50700 * 109.46830 * 119.99891 * 2 1 3 6 6 N 1.29496 * 126.14579 * 59.97835 * 5 2 1 7 7 N 1.26246 * 116.58560 * 180.02562 * 6 5 2 8 8 C 1.29894 * 117.65933 * 359.97438 * 7 6 5 9 9 N 1.39086 * 125.65374 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99706 * 0.03276 * 9 8 7 11 11 O 1.21578 * 120.00508 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99317 * 180.02562 * 10 9 8 13 13 C 1.47420 * 125.65006 * 359.68278 * 12 10 9 14 14 C 1.55140 * 104.72194 * 155.82145 * 13 12 10 15 15 C 1.55162 * 101.48377 * 37.29714 * 14 13 12 16 16 O 1.42897 * 110.71856 * 82.69642 * 15 14 13 17 17 C 1.50694 * 110.87161 * 205.89937 * 15 14 13 18 18 H 1.07997 * 119.99785 * 355.06248 * 17 15 14 19 19 C 1.37871 * 120.00150 * 175.06694 * 17 15 14 20 20 N 1.31517 * 119.99944 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00479 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47148 * 59.99282 * 21 19 17 23 23 H 1.48492 * 109.47420 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46878 * 300.00246 * 21 19 17 25 25 C 1.47029 * 125.64644 * 179.97438 * 12 10 9 26 26 S 1.71311 * 108.68887 * 0.02562 * 8 7 6 27 27 H 1.08992 * 109.47021 * 299.99826 * 1 2 3 28 28 H 1.08997 * 109.46769 * 60.00372 * 1 2 3 29 29 H 1.09004 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47154 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47261 * 299.99436 * 3 2 1 32 32 H 1.09004 * 109.47678 * 59.99879 * 3 2 1 33 33 H 1.08997 * 109.47288 * 300.00221 * 4 2 1 34 34 H 1.08997 * 109.46929 * 59.99861 * 4 2 1 35 35 H 1.08998 * 109.47604 * 179.97438 * 4 2 1 36 36 H 0.96993 * 119.99539 * 180.02562 * 9 8 7 37 37 H 1.08996 * 110.36878 * 274.74826 * 13 12 10 38 38 H 1.09000 * 110.36893 * 37.07767 * 13 12 10 39 39 H 1.08992 * 111.19001 * 279.19663 * 14 13 12 40 40 H 1.08997 * 110.90382 * 155.27738 * 14 13 12 41 41 H 0.96700 * 113.99844 * 185.02330 * 16 15 14 42 42 H 0.97008 * 120.00110 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.87841 * 300.43614 * 25 12 10 44 44 H 1.09000 * 109.88385 * 61.44368 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7936 -1.9418 1.5525 7 7 2.3070 -2.3538 2.6298 8 6 3.0240 -1.5153 3.3154 9 7 3.6630 -1.7905 4.5197 10 6 3.5650 -3.0171 5.0695 11 8 2.9176 -3.8828 4.5131 12 7 4.1838 -3.2836 6.2368 13 6 5.0018 -2.3334 7.0122 14 6 4.9484 -2.8644 8.4689 15 6 4.9809 -4.3987 8.2398 16 8 6.3226 -4.8536 8.0530 17 6 4.3279 -5.1267 9.3863 18 1 3.9900 -4.5772 10.2524 19 6 4.1619 -6.4942 9.3295 20 7 4.5730 -7.1633 8.2745 21 14 3.3530 -7.3968 10.7509 22 1 1.9764 -6.8761 10.9487 23 1 3.2935 -8.8488 10.4456 24 1 4.1456 -7.1827 11.9884 25 6 4.1598 -4.5721 6.9447 26 16 3.0507 -0.0137 2.4911 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2075 -2.1391 35 1 3.1301 -0.7209 -1.2495 36 1 4.1792 -1.0998 4.9637 37 1 6.0281 -2.3288 6.6451 38 1 4.5741 -1.3323 6.9580 39 1 4.0257 -2.5629 8.9645 40 1 5.8198 -2.5353 9.0350 41 1 6.3923 -5.7919 7.8300 42 1 4.4559 -8.1254 8.2344 43 1 3.1325 -4.8410 7.1902 44 1 4.6065 -5.3462 6.3208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365763565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = -7.329065 kcal Electronic energy + Delta-G solvation = -27343.913938 eV Core-core repulsion = 23424.013300 eV Total energy + Delta-G solvation = -3919.900638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30979 -39.93047 -37.81454 -37.20678 -34.86800 -34.38999 -32.27313 -30.55489 -29.59152 -27.94707 -27.75555 -27.57826 -26.41711 -24.98817 -23.26762 -22.03585 -20.38658 -19.97271 -19.55955 -18.34098 -17.73254 -17.14081 -16.89191 -16.16570 -15.48816 -15.18841 -15.05219 -14.65721 -14.45090 -14.29752 -14.20337 -13.51664 -13.37770 -13.04251 -12.94595 -12.70578 -12.65864 -12.41039 -12.04228 -12.02472 -11.82305 -11.66133 -11.46520 -11.37373 -11.08414 -11.04899 -10.90921 -10.78330 -10.54453 -10.46732 -10.24186 -10.19368 -9.69280 -9.58679 -9.39838 -8.72256 -8.71746 -8.40334 -7.97794 -6.32049 -4.41219 0.47360 0.47914 1.14304 2.56200 2.65407 3.21455 3.27595 3.28888 3.52800 3.78790 4.02109 4.25004 4.41138 4.52488 4.73735 4.88952 4.96157 5.16524 5.19192 5.26833 5.29251 5.40814 5.50190 5.51360 5.56038 5.62774 5.64850 5.74196 5.84147 5.93243 5.97119 5.97570 6.08715 6.38959 6.52214 6.74156 6.78425 6.96079 7.20478 7.35656 7.68969 7.95883 8.11975 8.60947 8.66957 8.83918 9.23421 9.33227 10.75798 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.002390 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.742406 B =11713.955737 C =12227.871911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.022 3.978 3 C -0.152 4.152 4 C -0.137 4.137 5 C 0.005 3.995 6 N -0.221 5.221 7 N -0.271 5.271 8 C 0.259 3.741 9 N -0.636 5.636 10 C 0.705 3.295 11 O -0.529 6.529 12 N -0.620 5.620 13 C 0.096 3.904 14 C -0.114 4.114 15 C 0.250 3.750 16 O -0.585 6.585 17 C -0.540 4.540 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.121 3.879 26 S 0.088 5.912 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.417 0.583 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.383 0.617 42 H 0.272 0.728 43 H 0.069 0.931 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 19.381 -14.029 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 C -0.210 4.210 4 C -0.196 4.196 5 C -0.278 4.278 6 N -0.055 5.055 7 N -0.115 5.115 8 C -0.112 4.112 9 N -0.291 5.291 10 C 0.405 3.595 11 O -0.399 6.399 12 N -0.358 5.358 13 C -0.027 4.027 14 C -0.152 4.152 15 C 0.209 3.791 16 O -0.393 6.393 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.531 5.531 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C 0.000 4.000 26 S 0.329 5.671 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.255 0.745 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.234 0.766 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.568 18.720 -14.275 23.681 hybrid contribution -0.191 -0.839 0.996 1.317 sum -2.759 17.880 -13.279 22.442 Atomic orbital electron populations 1.21885 0.92022 1.03407 1.02259 1.19119 0.96554 0.93992 0.88606 1.22054 1.01695 0.94068 1.03209 1.21883 1.01366 1.01245 0.95080 1.29871 1.02475 0.94031 1.01440 1.71352 1.16716 1.09802 1.07665 1.71639 1.11708 1.26657 1.01517 1.25683 0.98090 0.93711 0.93727 1.42290 1.52501 1.14933 1.19334 1.15551 0.81453 0.81464 0.81073 1.91068 1.43374 1.43964 1.61516 1.48064 1.51172 1.16457 1.20136 1.22430 0.94914 0.91557 0.93832 1.22765 1.02195 0.97106 0.93175 1.19494 0.80390 0.89129 0.90088 1.86103 1.28413 1.31627 1.93206 1.21416 1.40362 0.92481 1.03525 0.91492 1.25079 0.94371 0.97638 0.96171 1.69679 1.46257 1.08940 1.28215 0.86439 0.79873 0.78458 0.82032 1.20006 1.21031 1.19968 1.23057 1.02359 0.80887 0.93732 1.84576 1.51459 1.12311 1.18773 0.92329 0.91348 0.91243 0.91801 0.90629 0.91806 0.91241 0.91354 0.92321 0.74466 0.91398 0.92534 0.90254 0.90300 0.76621 0.91812 0.91261 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.46 37.16 0.31 -0.74 16 2 C 0.02 0.18 0.99 -155.66 -0.15 0.03 16 3 C -0.15 -0.89 7.60 37.15 0.28 -0.61 16 4 C -0.14 -1.06 8.46 37.16 0.31 -0.74 16 5 C 0.01 0.06 6.10 -13.26 -0.08 -0.02 16 6 N -0.22 -3.62 11.65 33.58 0.39 -3.23 16 7 N -0.27 -5.21 9.73 29.97 0.29 -4.92 16 8 C 0.26 4.11 8.14 -87.05 -0.71 3.41 16 9 N -0.64 -9.93 5.37 -17.32 -0.09 -10.02 16 10 C 0.71 14.44 8.45 -86.92 -0.73 13.70 16 11 O -0.53 -13.27 15.35 5.30 0.08 -13.18 16 12 N -0.62 -12.44 3.33 -176.10 -0.59 -13.02 16 13 C 0.10 1.54 6.58 -2.41 -0.02 1.52 16 14 C -0.11 -2.13 6.24 -24.46 -0.15 -2.28 16 15 C 0.25 5.82 0.85 -89.94 -0.08 5.75 16 16 O -0.58 -14.18 13.07 -35.23 -0.46 -14.64 16 17 C -0.54 -13.77 8.13 -34.45 -0.28 -14.05 16 18 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 19 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 20 N -0.89 -23.59 10.96 55.43 0.61 -22.98 16 21 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.12 2.88 5.23 -3.06 -0.02 2.87 16 26 S 0.09 0.95 21.97 -107.50 -2.36 -1.41 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.36 8.00 -51.93 -0.42 -0.05 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.36 8.01 -51.93 -0.42 -0.05 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.42 4.80 7.29 -40.82 -0.30 4.50 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.69 7.29 -51.93 -0.38 0.31 16 39 H 0.08 1.42 8.04 -51.93 -0.42 1.01 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.38 9.60 7.45 45.56 0.34 9.94 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.07 1.82 7.81 -51.93 -0.41 1.41 16 44 H 0.07 1.78 7.92 -51.93 -0.41 1.37 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -32.52 373.99 -8.67 -41.19 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.75 Total: 10.70 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -1.40 Total: 10.57 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.61 Total: -54.17 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.38 Total: -27.83 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.36 Total: -1.41 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.52 -8.67 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365763565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.863 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds