Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30830 * 125.96191 * 2 1 4 4 C 1.33237 * 109.82678 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52742 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.63737 * 356.86368 * 5 4 3 7 7 C 1.55154 * 110.87380 * 233.61192 * 5 4 3 8 8 C 1.54906 * 101.58171 * 206.06500 * 7 5 4 9 9 N 1.47426 * 104.83509 * 37.01004 * 8 7 5 10 10 S 1.65598 * 125.65267 * 155.91993 * 9 8 7 11 11 O 1.42105 * 104.27286 * 26.01722 * 10 9 8 12 12 O 1.42100 * 104.27988 * 153.87090 * 10 9 8 13 13 C 1.81399 * 104.44832 * 269.94735 * 10 9 8 14 14 C 1.53000 * 109.47071 * 173.93133 * 13 10 9 15 15 C 1.50707 * 115.54738 * 39.91385 * 14 13 10 16 16 H 1.08003 * 120.00199 * 264.78216 * 15 14 13 17 17 C 1.37877 * 120.00088 * 84.78737 * 15 14 13 18 18 N 1.31516 * 119.99894 * 352.99630 * 17 15 14 19 19 Si 1.86791 * 120.00149 * 172.99838 * 17 15 14 20 20 H 1.48505 * 109.47195 * 89.99751 * 19 17 15 21 21 H 1.48503 * 109.47193 * 210.00077 * 19 17 15 22 22 H 1.48498 * 109.47384 * 329.99773 * 19 17 15 23 23 C 1.52996 * 117.50038 * 254.20581 * 14 13 10 24 24 C 1.52993 * 117.49881 * 185.58068 * 14 13 10 25 25 C 1.47022 * 108.70063 * 335.87074 * 9 8 7 26 26 N 1.30713 * 108.94755 * 0.26248 * 4 3 2 27 27 N 1.34431 * 125.95761 * 180.02562 * 2 1 3 28 28 H 0.97004 * 126.82259 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47536 * 89.99304 * 1 2 3 30 30 H 1.09001 * 109.47633 * 209.99872 * 1 2 3 31 31 H 1.09003 * 109.47204 * 329.99986 * 1 2 3 32 32 H 1.09004 * 111.00259 * 324.13332 * 7 5 4 33 33 H 1.08998 * 111.00463 * 87.94607 * 7 5 4 34 34 H 1.08997 * 110.36743 * 155.84643 * 8 7 5 35 35 H 1.09001 * 110.36621 * 278.06206 * 8 7 5 36 36 H 1.09001 * 109.46424 * 293.92973 * 13 10 9 37 37 H 1.08994 * 109.46995 * 53.92894 * 13 10 9 38 38 H 0.97002 * 120.00158 * 185.02911 * 18 17 15 39 39 H 1.09004 * 117.49756 * 0.02562 * 23 14 13 40 40 H 1.08998 * 117.49836 * 145.01641 * 23 14 13 41 41 H 1.09004 * 117.49940 * 214.97887 * 24 14 13 42 42 H 1.08996 * 117.50333 * 359.97438 * 24 14 13 43 43 H 1.09000 * 109.88588 * 241.64191 * 25 9 8 44 44 H 1.08998 * 109.88535 * 120.48155 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 1 4.4068 2.6607 -0.0552 7 6 5.7041 1.2926 -1.1677 8 6 7.0514 1.8208 -0.6150 9 7 7.0167 1.5090 0.8255 10 16 8.3390 1.3196 1.8042 11 8 9.3537 2.0905 1.1753 12 8 7.8650 1.6518 3.1019 13 6 8.7281 -0.4493 1.7020 14 6 10.0328 -0.7286 2.4507 15 6 10.2131 0.0225 3.7448 16 1 10.7668 0.9497 3.7584 17 6 9.6712 -0.4740 4.9113 18 7 8.8829 -1.5260 4.8746 19 14 10.0566 0.3476 6.5440 20 1 9.0483 1.4031 6.8173 21 1 10.0193 -0.6656 7.6290 22 1 11.4088 0.9586 6.4837 23 6 11.2831 -1.0038 1.6130 24 6 10.6035 -2.1458 2.3711 25 6 5.6135 1.3952 1.2495 26 7 3.6193 -0.6169 -0.0066 27 7 2.2964 -1.0882 -0.0005 28 1 2.0092 -2.0147 -0.0006 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 5.7490 0.2180 -1.3451 33 1 5.4177 1.8246 -2.0749 34 1 7.8852 1.3078 -1.0941 35 1 7.1293 2.8969 -0.7701 36 1 7.9200 -1.0255 2.1526 37 1 8.8403 -0.7367 0.6566 38 1 8.4435 -1.8314 5.6837 39 1 11.1763 -0.9854 0.5284 40 1 12.2364 -0.6414 1.9977 41 1 11.1098 -2.5349 3.2546 42 1 10.0493 -2.8794 1.7857 43 1 5.3909 2.1521 2.0016 44 1 5.4284 0.4007 1.6555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413378454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = 40.568464 kcal Electronic energy + Delta-G solvation = -28172.693026 eV Core-core repulsion = 24254.869381 eV Total energy + Delta-G solvation = -3917.823645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.37399 -38.39289 -36.67623 -36.05332 -34.85090 -33.56009 -32.58582 -32.01233 -30.65712 -29.13991 -28.11593 -27.95774 -25.43533 -23.54314 -22.15821 -21.20101 -21.16058 -19.85706 -19.46171 -18.29598 -18.18977 -16.98070 -16.42752 -16.02798 -15.78744 -15.04276 -14.70860 -14.67011 -14.49143 -13.93857 -13.66460 -13.56165 -13.40976 -13.25411 -13.03144 -12.93563 -12.63084 -12.11626 -12.07237 -11.76249 -11.74147 -11.46195 -11.10022 -11.06047 -10.94752 -10.90821 -10.85884 -10.76052 -10.48116 -10.30747 -10.21127 -10.19104 -10.06796 -9.69965 -9.59969 -8.93171 -8.63388 -8.48766 -8.04076 -6.11804 -4.26461 1.18051 1.37915 2.40809 2.63608 3.35772 3.43472 3.46044 3.50972 3.72681 4.28511 4.43640 4.48118 4.56652 4.64682 4.82877 4.96380 4.98085 5.09469 5.18699 5.23404 5.28274 5.36970 5.38027 5.52053 5.64103 5.75631 5.78423 5.93320 5.98504 6.00542 6.08279 6.16665 6.23937 6.32179 6.38418 6.48431 6.67050 6.72822 6.79398 6.82266 7.01125 7.23339 7.42883 7.82499 7.90284 8.23008 8.82068 9.50512 10.95751 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.003480 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.281800 B = 8044.619728 C = 8619.050461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.279 3.721 3 N -0.537 5.537 4 C 0.242 3.758 5 C -0.007 4.007 6 H 0.113 0.887 7 C -0.121 4.121 8 C 0.123 3.877 9 N -1.024 6.024 10 S 2.637 3.363 11 O -0.969 6.969 12 O -0.936 6.936 13 C -0.558 4.558 14 C 0.051 3.949 15 C -0.544 4.544 16 H 0.069 0.931 17 C 0.098 3.902 18 N -0.867 5.867 19 Si 0.889 3.111 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.204 4.204 24 C -0.145 4.145 25 C 0.135 3.865 26 N -0.302 5.302 27 N -0.483 5.483 28 H 0.440 0.560 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 0.505 -13.207 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.001 3.999 3 N -0.266 5.266 4 C -0.041 4.041 5 C -0.029 4.029 6 H 0.131 0.869 7 C -0.161 4.161 8 C -0.003 4.003 9 N -0.860 5.860 10 S 2.735 3.265 11 O -0.960 6.960 12 O -0.927 6.927 13 C -0.691 4.691 14 C 0.049 3.951 15 C -0.581 4.581 16 H 0.087 0.913 17 C -0.110 4.110 18 N -0.501 5.501 19 Si 0.716 3.284 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.241 4.241 24 C -0.183 4.183 25 C 0.008 3.992 26 N -0.130 5.130 27 N -0.201 5.201 28 H 0.286 0.714 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.684 1.034 -12.548 20.112 hybrid contribution -0.541 -1.213 0.650 1.479 sum -16.225 -0.179 -11.898 20.121 Atomic orbital electron populations 1.20388 0.83673 1.05083 1.04459 1.24400 0.96617 0.82937 0.95992 1.70356 1.01356 1.29527 1.25364 1.23889 0.92715 0.89976 0.97481 1.20604 0.88403 0.97187 0.96755 0.86932 1.22905 0.93647 1.02745 0.96770 1.21882 0.97426 1.00525 0.80418 1.59283 1.19299 1.87185 1.20261 1.04405 0.71456 0.78035 0.72555 1.93472 1.57115 1.68171 1.77210 1.93527 1.79213 1.82734 1.37201 1.29999 1.09437 1.23897 1.05737 1.18175 0.85547 0.97406 0.93988 1.20599 1.38178 1.08768 0.90585 0.91279 1.24896 0.93309 0.93549 0.99206 1.69961 1.27527 1.23505 1.29075 0.86605 0.79535 0.79591 0.82697 1.19547 1.21008 1.19386 1.23121 0.98662 1.06226 0.96119 1.22523 1.03640 0.91573 1.00605 1.21575 0.80056 1.02421 0.95197 1.78074 0.96283 1.12325 1.26342 1.48026 1.04387 1.10069 1.57663 0.71438 0.89060 0.89866 0.88305 0.89822 0.89694 0.90515 0.91094 0.85536 0.88681 0.92604 0.91273 0.89688 0.89662 0.91665 0.90424 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.51 36.01 0.38 0.05 16 2 C 0.28 2.62 8.24 -155.69 -1.28 1.34 16 3 N -0.54 -6.78 11.19 -8.16 -0.09 -6.87 16 4 C 0.24 3.27 6.70 -156.86 -1.05 2.22 16 5 C -0.01 -0.09 3.47 -89.93 -0.31 -0.40 16 6 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 7 C -0.12 -1.36 6.53 -24.59 -0.16 -1.52 16 8 C 0.12 1.65 6.89 -2.53 -0.02 1.64 16 9 N -1.02 -17.61 3.62 -111.42 -0.40 -18.02 16 10 S 2.64 58.83 4.83 -107.50 -0.52 58.31 16 11 O -0.97 -23.15 17.60 -57.54 -1.01 -24.16 16 12 O -0.94 -24.30 16.73 -57.54 -0.96 -25.27 16 13 C -0.56 -12.40 6.29 37.16 0.23 -12.17 16 14 C 0.05 1.29 1.64 -155.66 -0.26 1.03 16 15 C -0.54 -15.36 6.89 -34.44 -0.24 -15.59 16 16 H 0.07 1.99 7.82 -52.48 -0.41 1.58 16 17 C 0.10 2.76 5.39 -17.82 -0.10 2.67 16 18 N -0.87 -24.65 12.96 55.43 0.72 -23.94 16 19 Si 0.89 22.26 29.55 -169.99 -5.02 17.24 16 20 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.20 -4.56 9.88 -26.73 -0.26 -4.82 16 24 C -0.14 -3.39 9.50 -26.73 -0.25 -3.65 16 25 C 0.13 2.12 6.48 -3.06 -0.02 2.10 16 26 N -0.30 -4.10 12.41 32.42 0.40 -3.69 16 27 N -0.48 -4.67 7.45 32.62 0.24 -4.42 16 28 H 0.44 2.62 8.96 -182.33 -1.63 0.99 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.99 7.84 -51.93 -0.41 0.58 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.13 2.90 8.14 -51.92 -0.42 2.47 16 37 H 0.09 1.78 7.95 -51.93 -0.41 1.37 16 38 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 39 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 40 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.16 7.70 -51.93 -0.40 0.76 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -37.01 380.43 -12.15 -49.15 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.89 Total: 3.05 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -3.34 Total: -27.12 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.87 Total: -56.94 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -1.98 Total: -49.43 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 58.83 SS G_CDS: -0.52 Total: 58.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.01 -12.15 -49.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413378454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.721 kcal (2) G-P(sol) polarization free energy of solvation -37.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds