Wall clock time and date at job start Sat Apr 11 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30830 * 125.96191 * 2 1 4 4 C 1.33237 * 109.82678 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52742 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.63737 * 356.86368 * 5 4 3 7 7 C 1.55154 * 110.87380 * 233.61192 * 5 4 3 8 8 C 1.54906 * 101.58171 * 206.06500 * 7 5 4 9 9 N 1.47426 * 104.83509 * 37.01004 * 8 7 5 10 10 S 1.65598 * 125.65267 * 155.91993 * 9 8 7 11 11 O 1.42105 * 104.27286 * 26.01722 * 10 9 8 12 12 O 1.42100 * 104.27988 * 153.87090 * 10 9 8 13 13 C 1.81399 * 104.44832 * 269.94735 * 10 9 8 14 14 C 1.53000 * 109.47071 * 173.93133 * 13 10 9 15 15 C 1.50707 * 115.54738 * 39.91385 * 14 13 10 16 16 H 1.08003 * 120.00199 * 264.78216 * 15 14 13 17 17 C 1.37877 * 120.00088 * 84.78737 * 15 14 13 18 18 N 1.31516 * 119.99894 * 352.99630 * 17 15 14 19 19 Si 1.86791 * 120.00149 * 172.99838 * 17 15 14 20 20 H 1.48505 * 109.47195 * 89.99751 * 19 17 15 21 21 H 1.48503 * 109.47193 * 210.00077 * 19 17 15 22 22 H 1.48498 * 109.47384 * 329.99773 * 19 17 15 23 23 C 1.52996 * 117.50038 * 254.20581 * 14 13 10 24 24 C 1.52993 * 117.49881 * 185.58068 * 14 13 10 25 25 C 1.47022 * 108.70063 * 335.87074 * 9 8 7 26 26 N 1.30713 * 108.94755 * 0.26248 * 4 3 2 27 27 N 1.34431 * 125.95761 * 180.02562 * 2 1 3 28 28 H 0.97004 * 126.82259 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47536 * 89.99304 * 1 2 3 30 30 H 1.09001 * 109.47633 * 209.99872 * 1 2 3 31 31 H 1.09003 * 109.47204 * 329.99986 * 1 2 3 32 32 H 1.09004 * 111.00259 * 324.13332 * 7 5 4 33 33 H 1.08998 * 111.00463 * 87.94607 * 7 5 4 34 34 H 1.08997 * 110.36743 * 155.84643 * 8 7 5 35 35 H 1.09001 * 110.36621 * 278.06206 * 8 7 5 36 36 H 1.09001 * 109.46424 * 293.92973 * 13 10 9 37 37 H 1.08994 * 109.46995 * 53.92894 * 13 10 9 38 38 H 0.97002 * 120.00158 * 185.02911 * 18 17 15 39 39 H 1.09004 * 117.49756 * 0.02562 * 23 14 13 40 40 H 1.08998 * 117.49836 * 145.01641 * 23 14 13 41 41 H 1.09004 * 117.49940 * 214.97887 * 24 14 13 42 42 H 1.08996 * 117.50333 * 359.97438 * 24 14 13 43 43 H 1.09000 * 109.88588 * 241.64191 * 25 9 8 44 44 H 1.08998 * 109.88535 * 120.48155 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 1 4.4068 2.6607 -0.0552 7 6 5.7041 1.2926 -1.1677 8 6 7.0514 1.8208 -0.6150 9 7 7.0167 1.5090 0.8255 10 16 8.3390 1.3196 1.8042 11 8 9.3537 2.0905 1.1753 12 8 7.8650 1.6518 3.1019 13 6 8.7281 -0.4493 1.7020 14 6 10.0328 -0.7286 2.4507 15 6 10.2131 0.0225 3.7448 16 1 10.7668 0.9497 3.7584 17 6 9.6712 -0.4740 4.9113 18 7 8.8829 -1.5260 4.8746 19 14 10.0566 0.3476 6.5440 20 1 9.0483 1.4031 6.8173 21 1 10.0193 -0.6656 7.6290 22 1 11.4088 0.9586 6.4837 23 6 11.2831 -1.0038 1.6130 24 6 10.6035 -2.1458 2.3711 25 6 5.6135 1.3952 1.2495 26 7 3.6193 -0.6169 -0.0066 27 7 2.2964 -1.0882 -0.0005 28 1 2.0092 -2.0147 -0.0006 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 5.7490 0.2180 -1.3451 33 1 5.4177 1.8246 -2.0749 34 1 7.8852 1.3078 -1.0941 35 1 7.1293 2.8969 -0.7701 36 1 7.9200 -1.0255 2.1526 37 1 8.8403 -0.7367 0.6566 38 1 8.4435 -1.8314 5.6837 39 1 11.1763 -0.9854 0.5284 40 1 12.2364 -0.6414 1.9977 41 1 11.1098 -2.5349 3.2546 42 1 10.0493 -2.8794 1.7857 43 1 5.3909 2.1521 2.0016 44 1 5.4284 0.4007 1.6555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413378454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:36 Heat of formation + Delta-G solvation = 14.001451 kcal Electronic energy + Delta-G solvation = -28173.845058 eV Core-core repulsion = 24254.869381 eV Total energy + Delta-G solvation = -3918.975677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.19888 -39.52075 -38.55537 -37.90641 -36.71813 -34.43476 -34.12623 -33.35322 -31.68670 -30.16536 -29.89562 -28.67310 -27.53932 -24.64452 -23.23824 -22.97830 -21.97240 -21.37097 -20.81988 -19.88158 -19.00783 -18.65325 -18.24755 -17.27604 -16.94325 -16.66126 -16.48822 -16.26935 -15.65089 -15.37649 -15.04626 -14.82393 -14.65156 -14.21886 -13.99158 -13.83059 -13.79817 -13.74638 -13.61413 -13.07549 -12.98042 -12.89666 -12.86052 -12.81596 -12.64874 -12.53783 -12.43016 -12.29171 -12.10599 -11.92485 -11.82471 -11.60791 -11.07930 -11.05814 -10.89641 -10.56042 -10.46908 -10.13187 -9.78236 -8.25384 -6.43483 -0.53285 0.57893 1.33045 1.39559 1.44364 1.71650 1.76387 2.01685 2.37490 2.91418 3.03787 3.08105 3.24293 3.37789 3.43084 3.71354 3.78762 3.84481 4.01595 4.20514 4.25645 4.31627 4.40221 4.55206 4.57000 4.59044 4.71835 4.72922 4.78952 4.82501 4.88945 4.95199 4.96487 5.06860 5.10953 5.16319 5.22589 5.29115 5.33591 5.37684 5.50561 5.58781 5.65812 6.17910 6.21524 6.66164 7.07604 7.34463 8.81623 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.003480 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.281800 B = 8044.619728 C = 8619.050461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.287 3.713 3 N -0.568 5.568 4 C 0.231 3.769 5 C 0.000 4.000 6 H 0.128 0.872 7 C -0.106 4.106 8 C 0.110 3.890 9 N -1.022 6.022 10 S 2.648 3.352 11 O -0.990 6.990 12 O -0.985 6.985 13 C -0.552 4.552 14 C 0.013 3.987 15 C -0.559 4.559 16 H 0.050 0.950 17 C 0.057 3.943 18 N -0.886 5.886 19 Si 0.927 3.073 20 H -0.280 1.280 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.186 4.186 24 C -0.142 4.142 25 C 0.131 3.869 26 N -0.338 5.338 27 N -0.477 5.477 28 H 0.455 0.545 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.143 0.152 -15.285 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 N -0.298 5.298 4 C -0.052 4.052 5 C -0.023 4.023 6 H 0.146 0.854 7 C -0.146 4.146 8 C -0.014 4.014 9 N -0.860 5.860 10 S 2.748 3.252 11 O -0.980 6.980 12 O -0.975 6.975 13 C -0.685 4.685 14 C 0.011 3.989 15 C -0.596 4.596 16 H 0.068 0.932 17 C -0.147 4.147 18 N -0.521 5.521 19 Si 0.751 3.249 20 H -0.206 1.206 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.223 4.223 24 C -0.181 4.181 25 C 0.004 3.996 26 N -0.167 5.167 27 N -0.197 5.197 28 H 0.303 0.697 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.160 0.658 -14.625 22.556 hybrid contribution -0.176 -1.119 1.236 1.677 sum -17.336 -0.462 -13.388 21.909 Atomic orbital electron populations 1.20651 0.79995 1.06464 1.06182 1.25295 0.98310 0.81985 0.93530 1.70350 1.01317 1.31135 1.26989 1.23942 0.93275 0.90054 0.97939 1.20569 0.88133 0.98077 0.95475 0.85429 1.22871 0.91657 1.02796 0.97257 1.22292 0.99253 1.01901 0.77961 1.58797 1.18599 1.86820 1.21781 1.03680 0.71695 0.77948 0.71913 1.93431 1.58512 1.68772 1.77335 1.93459 1.80143 1.83544 1.40367 1.29873 1.07584 1.23602 1.07456 1.18323 0.87943 0.98467 0.94186 1.20770 1.37828 1.08466 0.92557 0.93184 1.25473 0.93439 0.94242 1.01594 1.70004 1.28161 1.24264 1.29640 0.86023 0.79293 0.79059 0.80477 1.20564 1.19231 1.18679 1.23208 0.97271 1.04165 0.97661 1.22464 1.03691 0.91482 1.00478 1.21652 0.79819 1.01242 0.96887 1.77964 0.98618 1.12641 1.27483 1.47971 1.03320 1.11115 1.57251 0.69676 0.86961 0.87228 0.88128 0.90319 0.86365 0.89377 0.89569 0.86764 0.85013 0.92484 0.87982 0.89899 0.91630 0.89763 0.91317 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.51 71.24 0.75 0.34 16 2 C 0.29 4.84 8.24 138.23 1.14 5.97 16 3 N -0.57 -13.62 11.19 -179.72 -2.01 -15.63 16 4 C 0.23 6.03 6.70 138.63 0.93 6.95 16 5 C 0.00 0.00 3.47 -10.35 -0.04 -0.04 16 6 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 7 C -0.11 -2.15 6.53 31.98 0.21 -1.94 16 8 C 0.11 2.74 6.89 86.85 0.60 3.34 16 9 N -1.02 -34.78 3.62 -506.43 -1.83 -36.61 16 10 S 2.65 119.39 4.83 -56.49 -0.27 119.12 16 11 O -0.99 -47.28 17.60 -127.65 -2.25 -49.53 16 12 O -0.98 -53.02 16.73 -127.65 -2.14 -55.16 16 13 C -0.55 -24.34 6.29 71.98 0.45 -23.88 16 14 C 0.01 0.65 1.64 -52.93 -0.09 0.56 16 15 C -0.56 -32.16 6.89 25.60 0.18 -31.98 16 16 H 0.05 2.98 7.82 -2.91 -0.02 2.96 16 17 C 0.06 3.30 5.39 84.65 0.46 3.76 16 18 N -0.89 -51.23 12.96 21.45 0.28 -50.95 16 19 Si 0.93 46.17 29.55 68.60 2.03 48.19 16 20 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 23 C -0.19 -8.01 9.88 30.59 0.30 -7.71 16 24 C -0.14 -6.57 9.50 30.59 0.29 -6.28 16 25 C 0.13 4.17 6.48 86.73 0.56 4.73 16 26 N -0.34 -8.91 12.41 -51.33 -0.64 -9.55 16 27 N -0.48 -8.51 7.45 -50.71 -0.38 -8.88 16 28 H 0.45 4.64 8.96 -213.09 -1.91 2.73 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 1.71 7.84 -2.38 -0.02 1.69 16 33 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.11 5.30 8.14 -2.39 -0.02 5.28 16 37 H 0.13 4.66 7.95 -2.39 -0.02 4.65 16 38 H 0.27 14.65 8.32 -92.71 -0.77 13.88 16 39 H 0.10 3.69 8.08 -2.39 -0.02 3.67 16 40 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 41 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.05 1.84 7.70 -2.39 -0.02 1.82 16 Total: -1.00 -81.98 380.43 -2.36 -84.34 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.89 Total: 20.83 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 5.74 Total: -46.17 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -4.58 Total: -121.63 kcal Atomic # 8 Polarization: -100.30 SS G_CDS: -4.38 Total: -104.68 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 119.39 SS G_CDS: -0.27 Total: 119.12 kcal Total: -81.98 -2.36 -84.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413378454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.341 kcal (2) G-P(sol) polarization free energy of solvation -81.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds