Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30832 * 125.95988 * 2 1 4 4 C 1.33239 * 109.82923 * 180.12201 * 3 2 1 5 5 C 1.50703 * 125.52715 * 179.86088 * 4 3 2 6 6 H 1.08998 * 110.64157 * 358.02434 * 5 4 3 7 7 C 1.55151 * 110.72206 * 121.17415 * 5 4 3 8 8 C 1.54911 * 101.58300 * 154.04462 * 7 5 4 9 9 N 1.47426 * 104.82515 * 322.98485 * 8 7 5 10 10 S 1.65606 * 125.64442 * 204.09555 * 9 8 7 11 11 O 1.42105 * 104.27802 * 333.95193 * 10 9 8 12 12 O 1.42101 * 104.27544 * 206.09812 * 10 9 8 13 13 C 1.81399 * 104.45006 * 90.02528 * 10 9 8 14 14 C 1.53002 * 109.47003 * 187.91007 * 13 10 9 15 15 C 1.50703 * 115.56394 * 320.21532 * 14 13 10 16 16 H 1.08006 * 119.99467 * 99.37669 * 15 14 13 17 17 C 1.37874 * 120.00216 * 279.38424 * 15 14 13 18 18 N 1.31518 * 119.99474 * 6.37466 * 17 15 14 19 19 Si 1.86793 * 120.00228 * 186.38062 * 17 15 14 20 20 H 1.48508 * 109.47180 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47355 * 119.99603 * 19 17 15 22 22 H 1.48501 * 109.47287 * 239.99727 * 19 17 15 23 23 C 1.53001 * 117.49956 * 174.52552 * 14 13 10 24 24 C 1.52996 * 117.49627 * 105.90271 * 14 13 10 25 25 C 1.47012 * 108.70814 * 24.36013 * 9 8 7 26 26 N 1.30708 * 108.94568 * 359.58976 * 4 3 2 27 27 N 1.34431 * 125.96434 * 179.67210 * 2 1 3 28 28 H 0.97006 * 126.81760 * 0.06970 * 27 2 1 29 29 H 1.08996 * 109.47464 * 270.29861 * 1 2 3 30 30 H 1.09002 * 109.47437 * 30.30413 * 1 2 3 31 31 H 1.09005 * 109.47306 * 150.30314 * 1 2 3 32 32 H 1.08997 * 111.01117 * 35.96223 * 7 5 4 33 33 H 1.09004 * 111.00077 * 272.11044 * 7 5 4 34 34 H 1.09001 * 110.36273 * 204.14813 * 8 7 5 35 35 H 1.08996 * 110.37105 * 81.82252 * 8 7 5 36 36 H 1.08996 * 109.46749 * 67.91579 * 13 10 9 37 37 H 1.08999 * 109.46758 * 307.90882 * 13 10 9 38 38 H 0.97007 * 119.99414 * 174.97169 * 18 17 15 39 39 H 1.08995 * 117.49978 * 145.02388 * 23 14 13 40 40 H 1.09002 * 117.49715 * 0.02562 * 23 14 13 41 41 H 1.08998 * 117.50216 * 0.02562 * 24 14 13 42 42 H 1.09001 * 117.49783 * 214.97768 * 24 14 13 43 43 H 1.09003 * 109.88646 * 118.12793 * 25 9 8 44 44 H 1.09001 * 109.88640 * 239.29584 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6237 -0.0065 6 1 4.4060 2.6616 -0.0420 7 6 5.6367 1.3765 1.2332 8 6 7.0137 1.8681 0.7214 9 7 7.0588 1.4571 -0.6937 10 16 8.4335 1.2029 -1.5815 11 8 9.4128 2.0180 -0.9523 12 8 8.0332 1.4427 -2.9237 13 6 8.8133 -0.5537 -1.3347 14 6 10.1784 -0.8713 -1.9482 15 6 10.4719 -0.1995 -3.2649 16 1 11.0821 0.6913 -3.2924 17 6 9.9615 -0.7219 -4.4343 18 7 9.1179 -1.7300 -4.3909 19 14 10.4680 0.0020 -6.0800 20 1 11.4197 1.1201 -5.8572 21 1 11.1211 -1.0477 -6.9026 22 1 9.2658 0.5096 -6.7887 23 6 10.7399 -2.2782 -1.7323 24 6 11.3506 -1.0884 -0.9891 25 6 5.6814 1.3165 -1.1881 26 7 3.6194 -0.6167 0.0044 27 7 2.2965 -1.0880 0.0062 28 1 2.0093 -2.0146 0.0106 29 1 -0.3634 0.0054 1.0276 30 1 -0.3634 0.8872 -0.5185 31 1 -0.3634 -0.8927 -0.5091 32 1 5.6697 0.3170 1.4870 33 1 5.3015 1.9701 2.0837 34 1 7.8186 1.3913 1.2808 35 1 7.0839 2.9527 0.8038 36 1 8.0480 -1.1620 -1.8167 37 1 8.8343 -0.7743 -0.2675 38 1 8.7026 -2.0503 -5.2070 39 1 11.3214 -2.7177 -2.5426 40 1 10.1364 -2.9775 -1.1536 41 1 11.1491 -1.0053 0.0788 42 1 12.3340 -0.7453 -1.3105 43 1 5.5048 2.0226 -1.9995 44 1 5.5152 0.2976 -1.5378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413378461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 40.256626 kcal Electronic energy + Delta-G solvation = -28192.606305 eV Core-core repulsion = 24274.769138 eV Total energy + Delta-G solvation = -3917.837167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37218 -38.38440 -36.67525 -36.03049 -34.82996 -33.55666 -32.58491 -32.02851 -30.64672 -29.14943 -28.09270 -27.94075 -25.43878 -23.55134 -22.13155 -21.20903 -21.17262 -19.85042 -19.45654 -18.29565 -18.18127 -16.96048 -16.42403 -15.99760 -15.80737 -15.03623 -14.69978 -14.66479 -14.49014 -13.93007 -13.66705 -13.55922 -13.41039 -13.25097 -13.02159 -12.93575 -12.61935 -12.10213 -12.07177 -11.76603 -11.74773 -11.44964 -11.07727 -11.04930 -10.93053 -10.90923 -10.85523 -10.76125 -10.47548 -10.30379 -10.20938 -10.18873 -10.07560 -9.68007 -9.58988 -8.92352 -8.61988 -8.52126 -8.03898 -6.12562 -4.27389 1.20024 1.38118 2.41041 2.63696 3.33909 3.43327 3.47781 3.52396 3.73261 4.29112 4.43408 4.47593 4.57596 4.65034 4.84634 4.96886 4.98546 5.10711 5.17543 5.23683 5.29025 5.36753 5.39115 5.52362 5.64783 5.75978 5.78710 5.94433 5.99270 6.01510 6.08420 6.16962 6.24088 6.32943 6.38123 6.49491 6.67782 6.72435 6.80286 6.82769 7.00347 7.22750 7.40691 7.82945 7.90443 8.23507 8.82558 9.50091 10.95213 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.003464 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.023925 B = 8080.690171 C = 8607.610300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.279 3.721 3 N -0.537 5.537 4 C 0.242 3.758 5 C -0.007 4.007 6 H 0.112 0.888 7 C -0.120 4.120 8 C 0.123 3.877 9 N -1.025 6.025 10 S 2.638 3.362 11 O -0.968 6.968 12 O -0.938 6.938 13 C -0.557 4.557 14 C 0.054 3.946 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.098 3.902 18 N -0.865 5.865 19 Si 0.892 3.108 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.277 1.277 23 C -0.150 4.150 24 C -0.203 4.203 25 C 0.134 3.866 26 N -0.301 5.301 27 N -0.483 5.483 28 H 0.440 0.560 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.264 0.736 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.400 1.192 12.179 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 N -0.266 5.266 4 C -0.041 4.041 5 C -0.030 4.030 6 H 0.130 0.870 7 C -0.160 4.160 8 C -0.003 4.003 9 N -0.861 5.861 10 S 2.737 3.263 11 O -0.959 6.959 12 O -0.928 6.928 13 C -0.690 4.690 14 C 0.051 3.949 15 C -0.584 4.584 16 H 0.089 0.911 17 C -0.110 4.110 18 N -0.499 5.499 19 Si 0.719 3.281 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.202 1.202 23 C -0.189 4.189 24 C -0.240 4.240 25 C 0.007 3.993 26 N -0.130 5.130 27 N -0.201 5.201 28 H 0.286 0.714 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.401 1.684 11.507 20.106 hybrid contribution -0.494 -1.255 -0.613 1.481 sum -16.895 0.430 10.894 20.107 Atomic orbital electron populations 1.20384 0.83678 1.05055 1.04472 1.24399 0.96612 0.82945 0.96015 1.70353 1.01351 1.29529 1.25391 1.23885 0.92707 0.89972 0.97486 1.20598 0.88383 0.97168 0.96820 0.86963 1.22903 0.93963 1.02897 0.96259 1.21888 0.97120 0.99976 0.81272 1.59296 1.19999 1.84622 1.22151 1.04367 0.71138 0.77847 0.72991 1.93469 1.58757 1.66163 1.77531 1.93519 1.80815 1.84673 1.33786 1.29982 1.09122 1.23779 1.06102 1.18171 0.85367 0.97441 0.93891 1.20679 1.35728 1.12809 0.89151 0.91127 1.24908 0.93436 0.93290 0.99330 1.69957 1.26623 1.24660 1.28670 0.86515 0.79029 0.79247 0.83327 1.19164 1.20846 1.20237 1.22572 1.03642 0.91371 1.01269 1.23092 0.99337 1.05718 0.95857 1.21577 0.80309 1.02263 0.95135 1.78084 0.96265 1.12329 1.26303 1.48030 1.04386 1.10073 1.57656 0.71436 0.89062 0.88315 0.89873 0.89934 0.89668 0.90498 0.91096 0.85363 0.88763 0.92605 0.89753 0.91644 0.91248 0.89693 0.90464 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.51 36.00 0.38 0.05 16 2 C 0.28 2.61 8.24 -155.69 -1.28 1.33 16 3 N -0.54 -6.76 11.19 -8.16 -0.09 -6.86 16 4 C 0.24 3.28 6.72 -156.86 -1.05 2.22 16 5 C -0.01 -0.09 3.46 -89.93 -0.31 -0.40 16 6 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 7 C -0.12 -1.37 6.52 -24.58 -0.16 -1.53 16 8 C 0.12 1.66 6.89 -2.53 -0.02 1.65 16 9 N -1.02 -17.72 3.62 -111.42 -0.40 -18.13 16 10 S 2.64 59.20 4.77 -107.50 -0.51 58.69 16 11 O -0.97 -23.30 17.61 -57.54 -1.01 -24.32 16 12 O -0.94 -24.39 16.85 -57.54 -0.97 -25.36 16 13 C -0.56 -12.44 6.29 37.16 0.23 -12.21 16 14 C 0.05 1.35 1.57 -155.66 -0.24 1.10 16 15 C -0.55 -15.40 6.95 -34.44 -0.24 -15.64 16 16 H 0.07 2.04 7.82 -52.48 -0.41 1.63 16 17 C 0.10 2.76 5.42 -17.82 -0.10 2.67 16 18 N -0.87 -24.59 13.12 55.43 0.73 -23.86 16 19 Si 0.89 22.37 29.55 -169.99 -5.02 17.35 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C -0.15 -3.50 9.72 -26.73 -0.26 -3.76 16 24 C -0.20 -4.52 9.88 -26.73 -0.26 -4.78 16 25 C 0.13 2.12 6.49 -3.06 -0.02 2.10 16 26 N -0.30 -4.12 12.41 32.42 0.40 -3.72 16 27 N -0.48 -4.69 7.45 32.62 0.24 -4.44 16 28 H 0.44 2.64 8.96 -182.33 -1.63 1.01 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.13 2.97 8.14 -51.93 -0.42 2.54 16 37 H 0.09 1.77 7.95 -51.92 -0.41 1.36 16 38 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 39 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 42 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.18 7.60 -51.93 -0.39 0.79 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -36.92 380.93 -12.13 -49.05 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.89 Total: 3.04 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -3.34 Total: -27.19 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.88 Total: -57.00 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -1.98 Total: -49.67 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 59.20 SS G_CDS: -0.51 Total: 58.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.92 -12.13 -49.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413378461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.306 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds