Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30832 * 125.95988 * 2 1 4 4 C 1.33239 * 109.82923 * 180.12201 * 3 2 1 5 5 C 1.50703 * 125.52715 * 179.86088 * 4 3 2 6 6 H 1.08998 * 110.64157 * 358.02434 * 5 4 3 7 7 C 1.55151 * 110.72206 * 121.17415 * 5 4 3 8 8 C 1.54911 * 101.58300 * 154.04462 * 7 5 4 9 9 N 1.47426 * 104.82515 * 322.98485 * 8 7 5 10 10 S 1.65606 * 125.64442 * 204.09555 * 9 8 7 11 11 O 1.42105 * 104.27802 * 333.95193 * 10 9 8 12 12 O 1.42101 * 104.27544 * 206.09812 * 10 9 8 13 13 C 1.81399 * 104.45006 * 90.02528 * 10 9 8 14 14 C 1.53002 * 109.47003 * 187.91007 * 13 10 9 15 15 C 1.50703 * 115.56394 * 320.21532 * 14 13 10 16 16 H 1.08006 * 119.99467 * 99.37669 * 15 14 13 17 17 C 1.37874 * 120.00216 * 279.38424 * 15 14 13 18 18 N 1.31518 * 119.99474 * 6.37466 * 17 15 14 19 19 Si 1.86793 * 120.00228 * 186.38062 * 17 15 14 20 20 H 1.48508 * 109.47180 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47355 * 119.99603 * 19 17 15 22 22 H 1.48501 * 109.47287 * 239.99727 * 19 17 15 23 23 C 1.53001 * 117.49956 * 174.52552 * 14 13 10 24 24 C 1.52996 * 117.49627 * 105.90271 * 14 13 10 25 25 C 1.47012 * 108.70814 * 24.36013 * 9 8 7 26 26 N 1.30708 * 108.94568 * 359.58976 * 4 3 2 27 27 N 1.34431 * 125.96434 * 179.67210 * 2 1 3 28 28 H 0.97006 * 126.81760 * 0.06970 * 27 2 1 29 29 H 1.08996 * 109.47464 * 270.29861 * 1 2 3 30 30 H 1.09002 * 109.47437 * 30.30413 * 1 2 3 31 31 H 1.09005 * 109.47306 * 150.30314 * 1 2 3 32 32 H 1.08997 * 111.01117 * 35.96223 * 7 5 4 33 33 H 1.09004 * 111.00077 * 272.11044 * 7 5 4 34 34 H 1.09001 * 110.36273 * 204.14813 * 8 7 5 35 35 H 1.08996 * 110.37105 * 81.82252 * 8 7 5 36 36 H 1.08996 * 109.46749 * 67.91579 * 13 10 9 37 37 H 1.08999 * 109.46758 * 307.90882 * 13 10 9 38 38 H 0.97007 * 119.99414 * 174.97169 * 18 17 15 39 39 H 1.08995 * 117.49978 * 145.02388 * 23 14 13 40 40 H 1.09002 * 117.49715 * 0.02562 * 23 14 13 41 41 H 1.08998 * 117.50216 * 0.02562 * 24 14 13 42 42 H 1.09001 * 117.49783 * 214.97768 * 24 14 13 43 43 H 1.09003 * 109.88646 * 118.12793 * 25 9 8 44 44 H 1.09001 * 109.88640 * 239.29584 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6237 -0.0065 6 1 4.4060 2.6616 -0.0420 7 6 5.6367 1.3765 1.2332 8 6 7.0137 1.8681 0.7214 9 7 7.0588 1.4571 -0.6937 10 16 8.4335 1.2029 -1.5815 11 8 9.4128 2.0180 -0.9523 12 8 8.0332 1.4427 -2.9237 13 6 8.8133 -0.5537 -1.3347 14 6 10.1784 -0.8713 -1.9482 15 6 10.4719 -0.1995 -3.2649 16 1 11.0821 0.6913 -3.2924 17 6 9.9615 -0.7219 -4.4343 18 7 9.1179 -1.7300 -4.3909 19 14 10.4680 0.0020 -6.0800 20 1 11.4197 1.1201 -5.8572 21 1 11.1211 -1.0477 -6.9026 22 1 9.2658 0.5096 -6.7887 23 6 10.7399 -2.2782 -1.7323 24 6 11.3506 -1.0884 -0.9891 25 6 5.6814 1.3165 -1.1881 26 7 3.6194 -0.6167 0.0044 27 7 2.2965 -1.0880 0.0062 28 1 2.0093 -2.0146 0.0106 29 1 -0.3634 0.0054 1.0276 30 1 -0.3634 0.8872 -0.5185 31 1 -0.3634 -0.8927 -0.5091 32 1 5.6697 0.3170 1.4870 33 1 5.3015 1.9701 2.0837 34 1 7.8186 1.3913 1.2808 35 1 7.0839 2.9527 0.8038 36 1 8.0480 -1.1620 -1.8167 37 1 8.8343 -0.7743 -0.2675 38 1 8.7026 -2.0503 -5.2070 39 1 11.3214 -2.7177 -2.5426 40 1 10.1364 -2.9775 -1.1536 41 1 11.1491 -1.0053 0.0788 42 1 12.3340 -0.7453 -1.3105 43 1 5.5048 2.0226 -1.9995 44 1 5.5152 0.2976 -1.5378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413378461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = 13.777033 kcal Electronic energy + Delta-G solvation = -28193.754547 eV Core-core repulsion = 24274.769138 eV Total energy + Delta-G solvation = -3918.985409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.19818 -39.51743 -38.55078 -37.89154 -36.70365 -34.43337 -34.13927 -33.35218 -31.68259 -30.17290 -29.87466 -28.66199 -27.54184 -24.65643 -23.21870 -22.98306 -21.97914 -21.36500 -20.81714 -19.87687 -19.01063 -18.63829 -18.25246 -17.25858 -16.93888 -16.66247 -16.48368 -16.26755 -15.64814 -15.37853 -15.04659 -14.81514 -14.65182 -14.21562 -13.99080 -13.83757 -13.79312 -13.74656 -13.60074 -13.06580 -12.97051 -12.88100 -12.84947 -12.81611 -12.65044 -12.52978 -12.45190 -12.29071 -12.10433 -11.93311 -11.82823 -11.57993 -11.07904 -11.05432 -10.89417 -10.57112 -10.47075 -10.12898 -9.78006 -8.25960 -6.44219 -0.52022 0.58118 1.31989 1.37808 1.46098 1.71833 1.76568 2.02950 2.37159 2.91239 3.04585 3.08798 3.25006 3.38149 3.42418 3.73104 3.78781 3.84000 4.01960 4.21424 4.25925 4.31845 4.40274 4.55366 4.57419 4.59522 4.72051 4.73154 4.78969 4.83610 4.89221 4.95030 4.96073 5.07052 5.11195 5.16062 5.22025 5.29161 5.33641 5.37049 5.51022 5.57889 5.66606 6.18801 6.21596 6.66453 7.07634 7.34289 8.81258 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.003464 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.023925 B = 8080.690171 C = 8607.610300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.287 3.713 3 N -0.567 5.567 4 C 0.231 3.769 5 C 0.000 4.000 6 H 0.128 0.872 7 C -0.106 4.106 8 C 0.110 3.890 9 N -1.022 6.022 10 S 2.649 3.351 11 O -0.990 6.990 12 O -0.985 6.985 13 C -0.551 4.551 14 C 0.015 3.985 15 C -0.561 4.561 16 H 0.051 0.949 17 C 0.059 3.941 18 N -0.884 5.884 19 Si 0.928 3.072 20 H -0.268 1.268 21 H -0.265 1.265 22 H -0.280 1.280 23 C -0.147 4.147 24 C -0.185 4.185 25 C 0.130 3.870 26 N -0.339 5.339 27 N -0.477 5.477 28 H 0.455 0.545 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.266 0.734 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.051 0.978 14.209 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 N -0.297 5.297 4 C -0.052 4.052 5 C -0.023 4.023 6 H 0.145 0.855 7 C -0.145 4.145 8 C -0.014 4.014 9 N -0.861 5.861 10 S 2.748 3.252 11 O -0.981 6.981 12 O -0.975 6.975 13 C -0.684 4.684 14 C 0.013 3.987 15 C -0.598 4.598 16 H 0.069 0.931 17 C -0.147 4.147 18 N -0.519 5.519 19 Si 0.753 3.247 20 H -0.192 1.192 21 H -0.189 1.189 22 H -0.206 1.206 23 C -0.186 4.186 24 C -0.222 4.222 25 C 0.004 3.996 26 N -0.168 5.168 27 N -0.197 5.197 28 H 0.303 0.697 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.043 1.448 13.537 22.603 hybrid contribution -0.079 -1.203 -1.190 1.694 sum -18.123 0.245 12.347 21.930 Atomic orbital electron populations 1.20650 0.79971 1.06478 1.06181 1.25301 0.98311 0.81976 0.93513 1.70348 1.01260 1.31106 1.27010 1.23934 0.93284 0.90024 0.97914 1.20561 0.87918 0.97965 0.95838 0.85451 1.22869 0.92020 1.03149 0.96494 1.22298 0.98965 1.01198 0.78951 1.58808 1.19168 1.84305 1.23770 1.03658 0.71498 0.77773 0.72253 1.93427 1.60226 1.66781 1.77640 1.93452 1.81752 1.85371 1.36968 1.29854 1.07185 1.23324 1.08039 1.18314 0.87616 0.98766 0.94018 1.20832 1.35369 1.12450 0.91169 0.93078 1.25473 0.93647 0.93832 1.01711 1.69999 1.27275 1.25395 1.29221 0.85959 0.78683 0.79200 0.80865 1.19194 1.18935 1.20586 1.22519 1.03597 0.91238 1.01236 1.23184 0.98156 1.03728 0.97123 1.21655 0.80234 1.01147 0.96598 1.77975 0.98644 1.12694 1.27517 1.47973 1.03306 1.11124 1.57264 0.69690 0.86988 0.88081 0.87228 0.90415 0.86344 0.89391 0.89584 0.86693 0.85121 0.92484 0.91580 0.89755 0.87992 0.89856 0.91324 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.51 71.23 0.75 0.35 16 2 C 0.29 4.82 8.24 138.22 1.14 5.95 16 3 N -0.57 -13.53 11.19 -179.73 -2.01 -15.54 16 4 C 0.23 6.05 6.72 138.63 0.93 6.98 16 5 C 0.00 -0.01 3.46 -10.35 -0.04 -0.05 16 6 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 7 C -0.11 -2.15 6.52 31.98 0.21 -1.94 16 8 C 0.11 2.76 6.89 86.86 0.60 3.36 16 9 N -1.02 -35.01 3.62 -506.41 -1.83 -36.84 16 10 S 2.65 120.14 4.77 -56.49 -0.27 119.87 16 11 O -0.99 -47.69 17.61 -127.65 -2.25 -49.94 16 12 O -0.99 -53.10 16.85 -127.65 -2.15 -55.25 16 13 C -0.55 -24.41 6.29 71.98 0.45 -23.96 16 14 C 0.01 0.75 1.57 -52.93 -0.08 0.66 16 15 C -0.56 -32.22 6.95 25.60 0.18 -32.04 16 16 H 0.05 3.04 7.82 -2.91 -0.02 3.02 16 17 C 0.06 3.36 5.42 84.65 0.46 3.82 16 18 N -0.88 -51.10 13.12 21.45 0.28 -50.82 16 19 Si 0.93 46.31 29.55 68.60 2.03 48.34 16 20 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 23 C -0.15 -6.75 9.72 30.60 0.30 -6.45 16 24 C -0.19 -7.94 9.88 30.59 0.30 -7.64 16 25 C 0.13 4.17 6.49 86.74 0.56 4.74 16 26 N -0.34 -9.03 12.41 -51.34 -0.64 -9.67 16 27 N -0.48 -8.55 7.45 -50.71 -0.38 -8.93 16 28 H 0.45 4.70 8.96 -213.09 -1.91 2.79 16 29 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.08 1.69 7.95 -2.39 -0.02 1.67 16 33 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.11 5.39 8.14 -2.39 -0.02 5.37 16 37 H 0.13 4.66 7.95 -2.39 -0.02 4.64 16 38 H 0.27 14.64 8.32 -92.70 -0.77 13.87 16 39 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.10 3.68 8.08 -2.39 -0.02 3.66 16 42 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.05 1.89 7.60 -2.39 -0.02 1.87 16 Total: -1.00 -81.76 380.93 -2.35 -84.11 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.89 Total: 20.88 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 5.76 Total: -46.21 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -4.58 Total: -121.79 kcal Atomic # 8 Polarization: -100.79 SS G_CDS: -4.40 Total: -105.19 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 120.14 SS G_CDS: -0.27 Total: 119.87 kcal Total: -81.76 -2.35 -84.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413378461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.884 kcal (2) G-P(sol) polarization free energy of solvation -81.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds