Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 C 1.53005 * 109.46815 * 240.00536 * 2 1 3 5 5 C 1.50694 * 109.47449 * 120.00369 * 2 1 3 6 6 N 1.30157 * 121.07016 * 240.02081 * 5 2 1 7 7 S 1.69952 * 105.74910 * 179.73208 * 6 5 2 8 8 C 1.72303 * 94.56431 * 0.31844 * 7 6 5 9 9 N 1.38763 * 127.50198 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00083 * 359.68164 * 9 8 7 11 11 O 1.21577 * 119.99822 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00483 * 179.97438 * 10 9 8 13 13 C 1.47028 * 125.64307 * 0.03239 * 12 10 9 14 14 C 1.54320 * 107.26701 * 178.89770 * 13 12 10 15 15 C 1.55153 * 102.94383 * 337.80525 * 14 13 12 16 16 O 1.42895 * 111.00660 * 277.38826 * 15 14 13 17 17 C 1.50702 * 111.00367 * 153.57571 * 15 14 13 18 18 H 1.08002 * 120.00299 * 3.18452 * 17 15 14 19 19 C 1.37884 * 119.99942 * 182.90010 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47463 * 125.63121 * 179.97438 * 12 10 9 26 26 N 1.31250 * 121.06465 * 59.99623 * 5 2 1 27 27 H 1.09001 * 109.46576 * 299.99571 * 1 2 3 28 28 H 1.08997 * 109.47393 * 59.99531 * 1 2 3 29 29 H 1.09001 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47436 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47307 * 300.00522 * 3 2 1 32 32 H 1.09001 * 109.46982 * 60.00678 * 3 2 1 33 33 H 1.09001 * 109.47058 * 299.99846 * 4 2 1 34 34 H 1.08997 * 109.47194 * 59.99812 * 4 2 1 35 35 H 1.09000 * 109.46920 * 180.02562 * 4 2 1 36 36 H 0.97000 * 120.00352 * 179.68221 * 9 8 7 37 37 H 1.09000 * 109.88086 * 59.48194 * 13 12 10 38 38 H 1.09003 * 109.87956 * 298.31182 * 13 12 10 39 39 H 1.09004 * 110.71836 * 219.43859 * 14 13 12 40 40 H 1.09006 * 110.72351 * 96.16930 * 14 13 12 41 41 H 0.96695 * 114.00567 * 176.81707 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.34826 * 85.33075 * 25 12 10 44 44 H 1.09002 * 110.40574 * 322.99292 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7104 1.2303 6 7 2.7816 -0.0980 2.1008 7 16 3.1102 -1.2428 3.3132 8 6 2.2111 -2.5039 2.5583 9 7 2.0301 -3.8020 3.0142 10 6 2.5984 -4.1952 4.1713 11 8 3.2700 -3.4128 4.8153 12 7 2.4222 -5.4558 4.6144 13 6 1.6388 -6.5001 3.9381 14 6 1.7438 -7.7790 4.7954 15 6 3.0424 -7.5446 5.6116 16 8 4.1977 -7.8979 4.8485 17 6 3.0061 -8.3024 6.9137 18 1 2.1693 -8.9463 7.1407 19 6 4.0442 -8.1782 7.8127 20 7 5.0632 -7.3941 7.5363 21 14 4.0029 -9.1235 9.4233 22 1 2.7574 -9.9291 9.4927 23 1 5.1802 -10.0256 9.4981 24 1 4.0387 -8.1677 10.5594 25 6 2.9844 -6.0160 5.8573 26 7 1.7282 -1.9666 1.4587 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6766 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2492 36 1 1.4945 -4.4264 2.5002 37 1 2.0473 -6.6852 2.9447 38 1 0.5966 -6.1901 3.8609 39 1 1.8402 -8.6609 4.1621 40 1 0.8832 -7.8710 5.4581 41 1 5.0353 -7.7229 5.2990 42 1 5.7933 -7.3065 8.1689 43 1 2.3337 -5.7917 6.7024 44 1 3.9854 -5.6218 6.0330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425265422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = -23.908479 kcal Electronic energy + Delta-G solvation = -27493.737639 eV Core-core repulsion = 23573.118064 eV Total energy + Delta-G solvation = -3920.619575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.77553 -40.15744 -37.88739 -36.44268 -34.79696 -34.46628 -32.31119 -31.54955 -30.29432 -28.08269 -27.45445 -27.37214 -25.93458 -24.84928 -23.16657 -21.80207 -20.88924 -19.86790 -18.82669 -18.24969 -17.63863 -17.23841 -17.16009 -16.13027 -15.46429 -15.24672 -15.21249 -14.93824 -14.51278 -14.13675 -14.02087 -13.58873 -13.25285 -13.03818 -12.58627 -12.47051 -12.42253 -12.21571 -11.86885 -11.81575 -11.77314 -11.61582 -11.47821 -11.28397 -11.13174 -11.07840 -11.02057 -10.96434 -10.78964 -10.56134 -10.33307 -10.15476 -9.58429 -9.55994 -9.54904 -8.83803 -8.72705 -8.52000 -8.03803 -6.40362 -4.50251 0.59734 1.04476 1.85857 2.25862 2.52586 3.13225 3.21256 3.23010 3.25527 3.73958 4.10204 4.18240 4.65452 4.76732 4.83610 4.86423 5.14801 5.29791 5.40447 5.44577 5.45302 5.51068 5.61774 5.63174 5.70015 5.72531 5.79574 5.83306 5.86867 5.94081 6.10616 6.11895 6.19843 6.30060 6.42368 6.57084 6.63981 6.80463 7.08465 7.19062 7.62449 7.63512 7.85854 7.91294 8.37358 8.54131 9.18517 9.27973 10.66998 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.002462 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.439400 B =11369.410901 C =11884.878251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.021 3.979 3 C -0.132 4.132 4 C -0.135 4.135 5 C 0.296 3.704 6 N -0.519 5.519 7 S 0.320 5.680 8 C 0.311 3.689 9 N -0.621 5.621 10 C 0.710 3.290 11 O -0.556 6.556 12 N -0.607 5.607 13 C 0.095 3.905 14 C -0.115 4.115 15 C 0.250 3.750 16 O -0.583 6.583 17 C -0.539 4.539 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.892 5.892 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.108 3.892 26 N -0.559 5.559 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.420 0.580 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.385 0.615 42 H 0.272 0.728 43 H 0.067 0.933 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 10.102 -13.246 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 C -0.190 4.190 4 C -0.194 4.194 5 C 0.006 3.994 6 N -0.353 5.353 7 S 0.457 5.543 8 C -0.066 4.066 9 N -0.274 5.274 10 C 0.411 3.589 11 O -0.431 6.431 12 N -0.342 5.342 13 C -0.028 4.028 14 C -0.153 4.153 15 C 0.209 3.791 16 O -0.392 6.392 17 C -0.577 4.577 18 H 0.088 0.912 19 C -0.132 4.132 20 N -0.531 5.531 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.013 4.013 26 N -0.292 5.292 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.236 0.764 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.219 11.343 -12.435 18.315 hybrid contribution -0.397 -1.261 0.438 1.393 sum -7.616 10.082 -11.998 17.424 Atomic orbital electron populations 1.21832 0.92578 1.02955 1.01967 1.19204 0.96150 0.94524 0.88541 1.21762 1.01852 0.93455 1.01942 1.21836 1.01162 1.01023 0.95352 1.22847 0.93292 0.86184 0.97098 1.77332 1.23976 1.26173 1.07797 1.85992 1.47311 0.95753 1.25268 1.24741 0.96202 0.92321 0.93371 1.41888 1.53067 1.08417 1.23987 1.15423 0.80734 0.83032 0.79753 1.90923 1.43646 1.51769 1.56801 1.47994 1.52424 1.07391 1.26390 1.22164 0.94150 0.89435 0.97042 1.22611 0.99424 0.94953 0.98277 1.19633 0.82763 0.87782 0.88960 1.86088 1.17732 1.87832 1.47564 1.21482 1.06681 1.28024 1.01499 0.91250 1.25096 0.94925 0.94399 0.98818 1.69642 1.09182 1.37046 1.37237 0.86317 0.78320 0.79660 0.82442 1.19542 1.20687 1.20695 1.23483 0.99445 0.96687 0.81645 1.67202 1.31043 1.11949 1.18971 0.92668 0.91627 0.91441 0.91936 0.92051 0.91955 0.91429 0.91626 0.92633 0.74121 0.91841 0.92275 0.90291 0.90044 0.76355 0.91813 0.91488 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.39 37.16 0.31 -0.91 16 2 C 0.02 0.22 0.95 -155.66 -0.15 0.07 16 3 C -0.13 -1.25 7.73 37.16 0.29 -0.96 16 4 C -0.14 -1.24 8.39 37.16 0.31 -0.93 16 5 C 0.30 4.14 6.07 -159.05 -0.97 3.17 16 6 N -0.52 -7.92 11.01 29.54 0.33 -7.60 16 7 S 0.32 5.21 21.17 -107.50 -2.28 2.94 16 8 C 0.31 4.86 8.50 -85.98 -0.73 4.13 16 9 N -0.62 -9.26 5.35 -16.81 -0.09 -9.35 16 10 C 0.71 12.96 8.45 -86.92 -0.73 12.23 16 11 O -0.56 -11.75 14.35 5.30 0.08 -11.67 16 12 N -0.61 -11.14 3.33 -176.19 -0.59 -11.73 16 13 C 0.09 1.43 6.15 -3.06 -0.02 1.42 16 14 C -0.11 -2.01 6.13 -24.90 -0.15 -2.17 16 15 C 0.25 5.52 0.88 -89.61 -0.08 5.45 16 16 O -0.58 -13.85 13.17 -35.23 -0.46 -14.31 16 17 C -0.54 -13.04 8.25 -34.44 -0.28 -13.32 16 18 H 0.07 1.65 7.78 -52.49 -0.41 1.24 16 19 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 20 N -0.89 -22.53 10.69 55.43 0.59 -21.93 16 21 Si 0.91 19.41 29.54 -169.99 -5.02 14.39 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.11 2.36 5.52 -2.49 -0.01 2.35 16 26 N -0.56 -8.16 10.30 -14.48 -0.15 -8.31 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.06 0.64 8.09 -51.92 -0.42 0.22 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.42 5.09 7.81 -40.82 -0.32 4.77 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 41 H 0.39 9.54 7.24 45.56 0.33 9.87 16 42 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 43 H 0.07 1.49 8.03 -51.93 -0.42 1.08 16 44 H 0.09 2.23 7.48 -51.93 -0.39 1.84 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -27.50 373.10 -10.10 -37.59 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.82 Total: 12.19 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -2.31 Total: 12.18 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.09 Total: -58.92 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.39 Total: -25.98 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -2.28 Total: 2.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.50 -10.10 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425265422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.685 kcal (2) G-P(sol) polarization free energy of solvation -27.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds