Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 C 1.53005 * 109.46815 * 240.00536 * 2 1 3 5 5 C 1.50694 * 109.47449 * 120.00369 * 2 1 3 6 6 N 1.30157 * 121.07016 * 240.02081 * 5 2 1 7 7 S 1.69952 * 105.74910 * 179.73208 * 6 5 2 8 8 C 1.72303 * 94.56431 * 0.31844 * 7 6 5 9 9 N 1.38763 * 127.50198 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00083 * 359.68164 * 9 8 7 11 11 O 1.21577 * 119.99822 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00483 * 179.97438 * 10 9 8 13 13 C 1.47028 * 125.64307 * 0.03239 * 12 10 9 14 14 C 1.54320 * 107.26701 * 178.89770 * 13 12 10 15 15 C 1.55153 * 102.94383 * 337.80525 * 14 13 12 16 16 O 1.42895 * 111.00660 * 277.38826 * 15 14 13 17 17 C 1.50702 * 111.00367 * 153.57571 * 15 14 13 18 18 H 1.08002 * 120.00299 * 3.18452 * 17 15 14 19 19 C 1.37884 * 119.99942 * 182.90010 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47463 * 125.63121 * 179.97438 * 12 10 9 26 26 N 1.31250 * 121.06465 * 59.99623 * 5 2 1 27 27 H 1.09001 * 109.46576 * 299.99571 * 1 2 3 28 28 H 1.08997 * 109.47393 * 59.99531 * 1 2 3 29 29 H 1.09001 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47436 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47307 * 300.00522 * 3 2 1 32 32 H 1.09001 * 109.46982 * 60.00678 * 3 2 1 33 33 H 1.09001 * 109.47058 * 299.99846 * 4 2 1 34 34 H 1.08997 * 109.47194 * 59.99812 * 4 2 1 35 35 H 1.09000 * 109.46920 * 180.02562 * 4 2 1 36 36 H 0.97000 * 120.00352 * 179.68221 * 9 8 7 37 37 H 1.09000 * 109.88086 * 59.48194 * 13 12 10 38 38 H 1.09003 * 109.87956 * 298.31182 * 13 12 10 39 39 H 1.09004 * 110.71836 * 219.43859 * 14 13 12 40 40 H 1.09006 * 110.72351 * 96.16930 * 14 13 12 41 41 H 0.96695 * 114.00567 * 176.81707 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.34826 * 85.33075 * 25 12 10 44 44 H 1.09002 * 110.40574 * 322.99292 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7104 1.2303 6 7 2.7816 -0.0980 2.1008 7 16 3.1102 -1.2428 3.3132 8 6 2.2111 -2.5039 2.5583 9 7 2.0301 -3.8020 3.0142 10 6 2.5984 -4.1952 4.1713 11 8 3.2700 -3.4128 4.8153 12 7 2.4222 -5.4558 4.6144 13 6 1.6388 -6.5001 3.9381 14 6 1.7438 -7.7790 4.7954 15 6 3.0424 -7.5446 5.6116 16 8 4.1977 -7.8979 4.8485 17 6 3.0061 -8.3024 6.9137 18 1 2.1693 -8.9463 7.1407 19 6 4.0442 -8.1782 7.8127 20 7 5.0632 -7.3941 7.5363 21 14 4.0029 -9.1235 9.4233 22 1 2.7574 -9.9291 9.4927 23 1 5.1802 -10.0256 9.4981 24 1 4.0387 -8.1677 10.5594 25 6 2.9844 -6.0160 5.8573 26 7 1.7282 -1.9666 1.4587 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6766 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2492 36 1 1.4945 -4.4264 2.5002 37 1 2.0473 -6.6852 2.9447 38 1 0.5966 -6.1901 3.8609 39 1 1.8402 -8.6609 4.1621 40 1 0.8832 -7.8710 5.4581 41 1 5.0353 -7.7229 5.2990 42 1 5.7933 -7.3065 8.1689 43 1 2.3337 -5.7917 6.7024 44 1 3.9854 -5.6218 6.0330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425265422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = -41.798178 kcal Electronic energy + Delta-G solvation = -27494.513395 eV Core-core repulsion = 23573.118064 eV Total energy + Delta-G solvation = -3921.395331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06938 -41.43080 -39.43886 -37.46561 -36.28198 -35.89475 -34.19106 -32.80407 -31.75862 -29.66486 -28.21423 -28.15639 -27.41437 -26.24368 -24.58155 -22.94549 -22.22517 -21.52849 -19.99360 -19.44498 -19.18666 -18.75552 -18.48087 -17.50064 -17.07699 -16.49926 -16.45243 -16.32603 -16.14501 -15.33159 -14.89533 -14.77852 -14.70514 -14.67824 -13.97275 -13.61332 -13.52915 -13.40417 -13.13553 -13.00232 -12.88951 -12.79427 -12.75344 -12.56351 -12.54957 -12.35467 -12.21278 -12.17608 -12.11015 -11.89509 -11.85190 -11.55871 -11.24355 -10.80956 -10.79151 -10.67238 -10.37514 -10.01283 -9.50377 -8.26200 -6.42103 -0.63990 -0.18774 0.59192 0.97987 1.32480 1.42075 1.46790 1.56067 1.83992 2.35883 2.46162 3.00505 3.01901 3.73629 3.82746 3.99465 3.99835 4.01050 4.11273 4.27324 4.38758 4.46145 4.56711 4.70384 4.76694 4.79871 4.82961 4.89936 4.95856 5.00325 5.00985 5.05652 5.08278 5.12575 5.28189 5.32263 5.39150 5.43281 5.45588 5.58747 5.76114 6.04773 6.37538 6.56965 6.67428 6.93826 7.29096 7.36377 8.79283 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.002462 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.439400 B =11369.410901 C =11884.878251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.016 3.984 3 C -0.129 4.129 4 C -0.131 4.131 5 C 0.293 3.707 6 N -0.523 5.523 7 S 0.275 5.725 8 C 0.310 3.690 9 N -0.603 5.603 10 C 0.711 3.289 11 O -0.590 6.590 12 N -0.609 5.609 13 C 0.095 3.905 14 C -0.109 4.109 15 C 0.232 3.768 16 O -0.588 6.588 17 C -0.552 4.552 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.961 3.039 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.123 3.877 26 N -0.549 5.549 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.436 0.564 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.376 0.624 42 H 0.270 0.730 43 H 0.055 0.945 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 10.090 -15.358 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.011 3.989 3 C -0.186 4.186 4 C -0.189 4.189 5 C 0.002 3.998 6 N -0.356 5.356 7 S 0.412 5.588 8 C -0.068 4.068 9 N -0.257 5.257 10 C 0.411 3.589 11 O -0.467 6.467 12 N -0.344 5.344 13 C -0.027 4.027 14 C -0.147 4.147 15 C 0.191 3.809 16 O -0.397 6.397 17 C -0.590 4.590 18 H 0.090 0.910 19 C -0.174 4.174 20 N -0.554 5.554 21 Si 0.787 3.213 22 H -0.187 1.187 23 H -0.209 1.209 24 H -0.210 1.210 25 C 0.000 4.000 26 N -0.281 5.281 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.278 0.722 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.226 0.774 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.484 11.321 -14.602 20.769 hybrid contribution 0.269 -1.214 1.019 1.608 sum -9.215 10.107 -13.583 19.276 Atomic orbital electron populations 1.21822 0.91091 1.02897 1.03050 1.19525 0.97259 0.94808 0.87321 1.21752 1.01069 0.92904 1.02904 1.21829 1.00554 1.00855 0.95700 1.23697 0.92256 0.86045 0.97769 1.77443 1.24764 1.25621 1.07740 1.86141 1.48608 0.97210 1.26844 1.24816 0.96190 0.92301 0.93536 1.41483 1.52694 1.08465 1.23032 1.15424 0.80515 0.82665 0.80264 1.90913 1.45007 1.52747 1.58053 1.47854 1.52716 1.08056 1.25728 1.22394 0.96132 0.87340 0.96787 1.22612 0.97031 0.96670 0.98384 1.19888 0.84042 0.87579 0.89394 1.86081 1.17842 1.87972 1.47769 1.21823 1.06606 1.28070 1.02505 0.91026 1.25790 0.94873 0.95189 1.01522 1.69753 1.09629 1.38115 1.37944 0.85447 0.78303 0.78396 0.79120 1.18723 1.20881 1.21012 1.22995 0.97263 0.96799 0.82898 1.67301 1.30525 1.12129 1.18108 0.93451 0.88710 0.92049 0.93150 0.89042 0.93038 0.92089 0.88676 0.93595 0.72217 0.90013 0.88073 0.89327 0.88770 0.77434 0.92082 0.92652 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.39 71.98 0.60 -1.38 16 2 C 0.02 0.31 0.95 -52.93 -0.05 0.26 16 3 C -0.13 -2.16 7.73 71.98 0.56 -1.60 16 4 C -0.13 -2.06 8.39 71.98 0.60 -1.45 16 5 C 0.29 7.86 6.07 139.39 0.85 8.70 16 6 N -0.52 -15.90 11.01 -60.46 -0.67 -16.57 16 7 S 0.28 9.16 21.17 -56.49 -1.20 7.96 16 8 C 0.31 9.46 8.50 178.73 1.52 10.98 16 9 N -0.60 -17.16 5.35 -325.36 -1.74 -18.90 16 10 C 0.71 25.72 8.45 179.05 1.51 27.24 16 11 O -0.59 -25.57 14.35 -3.96 -0.06 -25.63 16 12 N -0.61 -21.87 3.33 -829.59 -2.76 -24.63 16 13 C 0.09 2.59 6.15 86.73 0.53 3.12 16 14 C -0.11 -3.60 6.13 31.78 0.19 -3.40 16 15 C 0.23 10.23 0.88 -10.14 -0.01 10.22 16 16 O -0.59 -28.24 13.17 -148.98 -1.96 -30.20 16 17 C -0.55 -26.72 8.25 25.60 0.21 -26.51 16 18 H 0.07 3.35 7.78 -2.91 -0.02 3.33 16 19 C 0.03 1.36 5.29 84.66 0.45 1.80 16 20 N -0.92 -47.56 10.69 21.45 0.23 -47.33 16 21 Si 0.96 40.04 29.54 68.60 2.03 42.06 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.12 5.46 5.52 86.86 0.48 5.94 16 26 N -0.55 -15.28 10.30 -199.73 -2.06 -17.34 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 30 H 0.05 0.96 8.09 -2.38 -0.02 0.95 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.97 8.09 -2.39 -0.02 0.95 16 33 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.44 9.40 7.81 -92.71 -0.72 8.68 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 40 H 0.09 2.84 8.03 -2.38 -0.02 2.82 16 41 H 0.38 19.28 7.24 -74.06 -0.54 18.74 16 42 H 0.27 13.54 8.31 -92.70 -0.77 12.77 16 43 H 0.06 2.54 8.03 -2.39 -0.02 2.52 16 44 H 0.05 2.67 7.48 -2.39 -0.02 2.65 16 Total: -1.00 -61.33 373.10 -0.95 -62.29 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.22 Total: 34.37 kcal Atomic # 6 Polarization: 26.47 SS G_CDS: 7.45 Total: 33.92 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -7.00 Total: -124.77 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -2.02 Total: -55.83 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: 9.16 SS G_CDS: -1.20 Total: 7.96 kcal Total: -61.33 -0.95 -62.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425265422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.491 kcal (2) G-P(sol) polarization free energy of solvation -61.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds