Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46557 * 2 1 4 4 C 1.52994 * 109.47286 * 240.00348 * 2 1 3 5 5 C 1.50697 * 109.47508 * 119.99667 * 2 1 3 6 6 N 1.30154 * 121.06776 * 239.98013 * 5 2 1 7 7 S 1.69954 * 105.74354 * 180.02562 * 6 5 2 8 8 C 1.72296 * 94.56810 * 0.02562 * 7 6 5 9 9 N 1.38769 * 127.50311 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00201 * 359.97194 * 9 8 7 11 11 O 1.21575 * 119.99401 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00141 * 180.02562 * 10 9 8 13 13 C 1.47426 * 125.65068 * 359.69124 * 12 10 9 14 14 C 1.55126 * 104.72419 * 155.81591 * 13 12 10 15 15 C 1.55159 * 101.48489 * 37.29812 * 14 13 12 16 16 O 1.42902 * 110.72095 * 82.69467 * 15 14 13 17 17 C 1.50699 * 110.87591 * 205.89511 * 15 14 13 18 18 H 1.08002 * 119.99686 * 355.06718 * 17 15 14 19 19 C 1.37872 * 120.00194 * 175.06091 * 17 15 14 20 20 N 1.31512 * 120.00316 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99981 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47051 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47310 * 120.00278 * 21 19 17 24 24 H 1.48499 * 109.47396 * 240.00012 * 21 19 17 25 25 C 1.47027 * 125.64636 * 180.02562 * 12 10 9 26 26 N 1.31250 * 121.06104 * 60.00042 * 5 2 1 27 27 H 1.09003 * 109.47402 * 299.99553 * 1 2 3 28 28 H 1.09000 * 109.47551 * 59.99803 * 1 2 3 29 29 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46617 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46831 * 299.99757 * 3 2 1 32 32 H 1.08995 * 109.47054 * 60.00421 * 3 2 1 33 33 H 1.09000 * 109.46937 * 299.99576 * 4 2 1 34 34 H 1.09000 * 109.47216 * 59.99001 * 4 2 1 35 35 H 1.08995 * 109.47511 * 179.97438 * 4 2 1 36 36 H 0.97004 * 119.99717 * 179.97438 * 9 8 7 37 37 H 1.08999 * 110.36892 * 274.74911 * 13 12 10 38 38 H 1.09003 * 110.36588 * 37.06832 * 13 12 10 39 39 H 1.09000 * 111.19563 * 279.19917 * 14 13 12 40 40 H 1.08999 * 110.90519 * 155.27351 * 14 13 12 41 41 H 0.96701 * 114.00039 * 185.03059 * 16 15 14 42 42 H 0.97001 * 120.00490 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.88050 * 300.43646 * 25 12 10 44 44 H 1.08992 * 109.88458 * 61.45111 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 2.0324 -0.7103 1.2304 6 7 2.7822 -0.0979 2.1004 7 16 3.1174 -1.2450 3.3088 8 6 2.2126 -2.5042 2.5576 9 7 2.0326 -3.8026 3.0130 10 6 2.6020 -4.1961 4.1695 11 8 3.2730 -3.4134 4.8138 12 7 2.4276 -5.4572 4.6115 13 6 1.6372 -6.5028 3.9366 14 6 2.2342 -7.8401 4.4480 15 6 2.5472 -7.4931 5.9275 16 8 1.3775 -7.6292 6.7371 17 6 3.6631 -8.3563 6.4570 18 1 4.0712 -9.1470 5.8449 19 6 4.1633 -8.1367 7.7229 20 7 3.6662 -7.1741 8.4686 21 14 5.5471 -9.2063 8.3790 22 1 5.9265 -10.2097 7.3522 23 1 6.7221 -8.3557 8.6972 24 1 5.0932 -9.9034 9.6092 25 6 2.9885 -6.0162 5.8504 26 7 1.7282 -1.9665 1.4589 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1298 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7488 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 1.4969 -4.4269 2.4990 37 1 0.5863 -6.4228 4.2147 38 1 1.7512 -6.4258 2.8553 39 1 3.1442 -8.0981 3.9063 40 1 1.5008 -8.6438 4.3820 41 1 1.4999 -7.3504 7.6549 42 1 4.0178 -7.0198 9.3593 43 1 4.0765 -5.9554 5.8251 44 1 2.6065 -5.4672 6.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425265426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = -23.259312 kcal Electronic energy + Delta-G solvation = -27461.587091 eV Core-core repulsion = 23540.995666 eV Total energy + Delta-G solvation = -3920.591425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.79781 -40.18094 -37.92284 -36.46074 -34.82105 -34.50739 -32.35144 -31.55458 -30.23361 -28.07677 -27.46473 -27.38064 -25.94849 -24.84618 -23.19678 -21.83950 -20.95513 -19.83121 -18.84897 -18.27213 -17.66566 -17.19961 -17.19426 -16.17008 -15.52979 -15.34325 -15.16601 -14.92541 -14.50887 -14.07095 -14.03169 -13.56863 -13.14631 -13.07193 -12.60964 -12.59532 -12.42862 -12.22941 -11.93596 -11.83006 -11.73329 -11.63235 -11.47991 -11.32470 -11.13289 -11.09069 -11.03326 -10.95924 -10.86584 -10.55559 -10.33084 -10.16716 -9.59426 -9.57337 -9.49369 -8.80441 -8.74227 -8.49054 -8.14552 -6.40216 -4.49187 0.58024 1.02703 1.83999 2.23611 2.50917 3.14081 3.18859 3.23741 3.26368 3.71414 4.07966 4.18879 4.64286 4.75733 4.82351 4.87000 5.09169 5.27906 5.41275 5.43689 5.44517 5.51980 5.60862 5.62200 5.68868 5.71571 5.77001 5.81489 5.85603 5.92813 6.09586 6.10121 6.18758 6.28920 6.41028 6.61897 6.65106 6.75928 7.08313 7.21237 7.60534 7.62491 7.85936 7.90350 8.35304 8.55175 9.15381 9.25747 10.67696 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.002481 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.988086 B =11284.147271 C =11788.479713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.021 3.979 3 C -0.132 4.132 4 C -0.135 4.135 5 C 0.296 3.704 6 N -0.519 5.519 7 S 0.320 5.680 8 C 0.311 3.689 9 N -0.621 5.621 10 C 0.709 3.291 11 O -0.556 6.556 12 N -0.609 5.609 13 C 0.093 3.907 14 C -0.115 4.115 15 C 0.249 3.751 16 O -0.584 6.584 17 C -0.538 4.538 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.118 3.882 26 N -0.559 5.559 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.420 0.580 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.384 0.616 42 H 0.271 0.729 43 H 0.073 0.927 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 9.719 -15.280 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 C -0.190 4.190 4 C -0.194 4.194 5 C 0.006 3.994 6 N -0.352 5.352 7 S 0.457 5.543 8 C -0.067 4.067 9 N -0.274 5.274 10 C 0.410 3.590 11 O -0.431 6.431 12 N -0.345 5.345 13 C -0.029 4.029 14 C -0.153 4.153 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.531 5.531 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.003 4.003 26 N -0.291 5.291 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.234 0.766 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.504 10.935 -14.482 18.697 hybrid contribution 0.119 -1.243 0.139 1.256 sum -4.385 9.692 -14.343 17.858 Atomic orbital electron populations 1.21834 0.92558 1.02977 1.01991 1.19206 0.96175 0.94525 0.88516 1.21764 1.01834 0.93457 1.01964 1.21832 1.01130 1.01024 0.95369 1.22850 0.93344 0.86161 0.97060 1.77336 1.23966 1.26083 1.07852 1.85995 1.46914 0.95797 1.25632 1.24737 0.96203 0.92318 0.93399 1.41896 1.53095 1.08401 1.24051 1.15405 0.80883 0.82964 0.79791 1.90925 1.43844 1.51710 1.56606 1.48032 1.52169 1.07562 1.26707 1.22520 0.95862 0.88948 0.95614 1.22778 1.00807 0.94525 0.97142 1.19519 0.84389 0.88536 0.86714 1.86117 1.37521 1.89245 1.26392 1.21493 1.18241 1.17262 1.00660 0.91303 1.25080 0.96740 0.94840 0.96604 1.69681 1.42471 1.30302 1.10691 0.86327 0.81338 0.80220 0.78927 1.19557 1.20699 1.20674 1.23193 0.98734 0.96532 0.81857 1.67204 1.31008 1.11950 1.18968 0.92645 0.91621 0.91430 0.91948 0.92042 0.91941 0.91430 0.91621 0.92651 0.74091 0.90967 0.92032 0.90112 0.90080 0.76565 0.91872 0.90887 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.39 37.16 0.31 -0.90 16 2 C 0.02 0.22 0.95 -155.66 -0.15 0.07 16 3 C -0.13 -1.23 7.73 37.16 0.29 -0.95 16 4 C -0.14 -1.21 8.39 37.15 0.31 -0.90 16 5 C 0.30 4.09 6.07 -159.05 -0.97 3.13 16 6 N -0.52 -7.84 11.01 29.53 0.33 -7.52 16 7 S 0.32 5.15 21.17 -107.50 -2.28 2.88 16 8 C 0.31 4.79 8.50 -85.97 -0.73 4.06 16 9 N -0.62 -9.10 5.35 -16.81 -0.09 -9.19 16 10 C 0.71 12.79 8.45 -86.93 -0.73 12.05 16 11 O -0.56 -11.64 14.42 5.30 0.08 -11.57 16 12 N -0.61 -11.12 3.32 -176.10 -0.59 -11.71 16 13 C 0.09 1.40 6.58 -2.41 -0.02 1.39 16 14 C -0.11 -2.02 6.24 -24.46 -0.15 -2.17 16 15 C 0.25 5.49 0.85 -89.93 -0.08 5.42 16 16 O -0.58 -13.51 13.07 -35.23 -0.46 -13.97 16 17 C -0.54 -13.14 8.13 -34.44 -0.28 -13.42 16 18 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 19 C 0.07 1.76 5.28 -17.82 -0.09 1.66 16 20 N -0.89 -22.51 10.96 55.43 0.61 -21.90 16 21 Si 0.90 19.59 29.54 -169.99 -5.02 14.56 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.12 2.59 5.23 -3.06 -0.02 2.57 16 26 N -0.56 -8.05 10.30 -14.49 -0.15 -8.20 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.42 4.96 7.29 -40.82 -0.30 4.66 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.71 7.29 -51.93 -0.38 0.33 16 39 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.38 9.17 7.45 45.56 0.34 9.51 16 42 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 43 H 0.07 1.76 7.82 -51.93 -0.41 1.35 16 44 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -27.50 372.53 -10.02 -37.51 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.75 Total: 11.47 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -2.30 Total: 12.01 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.11 Total: -58.51 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.38 Total: -25.54 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -2.28 Total: 2.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.50 -10.02 -37.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425265426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.253 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds