Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46557 * 2 1 4 4 C 1.52994 * 109.47286 * 240.00348 * 2 1 3 5 5 C 1.50697 * 109.47508 * 119.99667 * 2 1 3 6 6 N 1.30154 * 121.06776 * 239.98013 * 5 2 1 7 7 S 1.69954 * 105.74354 * 180.02562 * 6 5 2 8 8 C 1.72296 * 94.56810 * 0.02562 * 7 6 5 9 9 N 1.38769 * 127.50311 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00201 * 359.97194 * 9 8 7 11 11 O 1.21575 * 119.99401 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00141 * 180.02562 * 10 9 8 13 13 C 1.47426 * 125.65068 * 359.69124 * 12 10 9 14 14 C 1.55126 * 104.72419 * 155.81591 * 13 12 10 15 15 C 1.55159 * 101.48489 * 37.29812 * 14 13 12 16 16 O 1.42902 * 110.72095 * 82.69467 * 15 14 13 17 17 C 1.50699 * 110.87591 * 205.89511 * 15 14 13 18 18 H 1.08002 * 119.99686 * 355.06718 * 17 15 14 19 19 C 1.37872 * 120.00194 * 175.06091 * 17 15 14 20 20 N 1.31512 * 120.00316 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99981 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47051 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47310 * 120.00278 * 21 19 17 24 24 H 1.48499 * 109.47396 * 240.00012 * 21 19 17 25 25 C 1.47027 * 125.64636 * 180.02562 * 12 10 9 26 26 N 1.31250 * 121.06104 * 60.00042 * 5 2 1 27 27 H 1.09003 * 109.47402 * 299.99553 * 1 2 3 28 28 H 1.09000 * 109.47551 * 59.99803 * 1 2 3 29 29 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46617 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46831 * 299.99757 * 3 2 1 32 32 H 1.08995 * 109.47054 * 60.00421 * 3 2 1 33 33 H 1.09000 * 109.46937 * 299.99576 * 4 2 1 34 34 H 1.09000 * 109.47216 * 59.99001 * 4 2 1 35 35 H 1.08995 * 109.47511 * 179.97438 * 4 2 1 36 36 H 0.97004 * 119.99717 * 179.97438 * 9 8 7 37 37 H 1.08999 * 110.36892 * 274.74911 * 13 12 10 38 38 H 1.09003 * 110.36588 * 37.06832 * 13 12 10 39 39 H 1.09000 * 111.19563 * 279.19917 * 14 13 12 40 40 H 1.08999 * 110.90519 * 155.27351 * 14 13 12 41 41 H 0.96701 * 114.00039 * 185.03059 * 16 15 14 42 42 H 0.97001 * 120.00490 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.88050 * 300.43646 * 25 12 10 44 44 H 1.08992 * 109.88458 * 61.45111 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 2.0324 -0.7103 1.2304 6 7 2.7822 -0.0979 2.1004 7 16 3.1174 -1.2450 3.3088 8 6 2.2126 -2.5042 2.5576 9 7 2.0326 -3.8026 3.0130 10 6 2.6020 -4.1961 4.1695 11 8 3.2730 -3.4134 4.8138 12 7 2.4276 -5.4572 4.6115 13 6 1.6372 -6.5028 3.9366 14 6 2.2342 -7.8401 4.4480 15 6 2.5472 -7.4931 5.9275 16 8 1.3775 -7.6292 6.7371 17 6 3.6631 -8.3563 6.4570 18 1 4.0712 -9.1470 5.8449 19 6 4.1633 -8.1367 7.7229 20 7 3.6662 -7.1741 8.4686 21 14 5.5471 -9.2063 8.3790 22 1 5.9265 -10.2097 7.3522 23 1 6.7221 -8.3557 8.6972 24 1 5.0932 -9.9034 9.6092 25 6 2.9885 -6.0162 5.8504 26 7 1.7282 -1.9665 1.4589 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1298 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7488 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 1.4969 -4.4269 2.4990 37 1 0.5863 -6.4228 4.2147 38 1 1.7512 -6.4258 2.8553 39 1 3.1442 -8.0981 3.9063 40 1 1.5008 -8.6438 4.3820 41 1 1.4999 -7.3504 7.6549 42 1 4.0178 -7.0198 9.3593 43 1 4.0765 -5.9554 5.8251 44 1 2.6065 -5.4672 6.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425265426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = -41.179275 kcal Electronic energy + Delta-G solvation = -27462.364159 eV Core-core repulsion = 23540.995666 eV Total energy + Delta-G solvation = -3921.368493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.08993 -41.44332 -39.47984 -37.47446 -36.30693 -35.91216 -34.23415 -32.79120 -31.70705 -29.67454 -28.21679 -28.15507 -27.42683 -26.23963 -24.61931 -22.97017 -22.28914 -21.49848 -20.00881 -19.45860 -19.17017 -18.76289 -18.50336 -17.55650 -17.12805 -16.53872 -16.43250 -16.29158 -16.14523 -15.23990 -14.82454 -14.81149 -14.76786 -14.70284 -14.09110 -13.62453 -13.51035 -13.42761 -13.13930 -13.00227 -12.90540 -12.80173 -12.75350 -12.57400 -12.55242 -12.38057 -12.27341 -12.19239 -12.08557 -11.89542 -11.85005 -11.55761 -11.20188 -10.80938 -10.80027 -10.67237 -10.32355 -10.08949 -9.57286 -8.27694 -6.42441 -0.64371 -0.19205 0.57887 0.96737 1.31613 1.40674 1.45382 1.54417 1.82326 2.34877 2.43442 2.99414 3.01015 3.72522 3.82575 3.95609 3.99304 3.99960 4.09137 4.29450 4.38687 4.45479 4.53196 4.65457 4.76668 4.79962 4.82320 4.90151 4.95510 5.00152 5.01112 5.03771 5.09582 5.12529 5.27851 5.30414 5.39294 5.40710 5.46297 5.58448 5.73627 6.04977 6.36348 6.55920 6.66171 6.92028 7.26993 7.35048 8.78374 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.002481 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.988086 B =11284.147271 C =11788.479713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.016 3.984 3 C -0.129 4.129 4 C -0.131 4.131 5 C 0.293 3.707 6 N -0.523 5.523 7 S 0.275 5.725 8 C 0.310 3.690 9 N -0.602 5.602 10 C 0.711 3.289 11 O -0.589 6.589 12 N -0.611 5.611 13 C 0.096 3.904 14 C -0.109 4.109 15 C 0.233 3.767 16 O -0.586 6.586 17 C -0.554 4.554 18 H 0.068 0.932 19 C 0.028 3.972 20 N -0.913 5.913 21 Si 0.959 3.041 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.280 1.280 25 C 0.137 3.863 26 N -0.548 5.548 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.436 0.564 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.376 0.624 42 H 0.270 0.730 43 H 0.042 0.958 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 9.591 -18.206 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.011 3.989 3 C -0.186 4.186 4 C -0.189 4.189 5 C 0.002 3.998 6 N -0.355 5.355 7 S 0.412 5.588 8 C -0.068 4.068 9 N -0.257 5.257 10 C 0.412 3.588 11 O -0.466 6.466 12 N -0.346 5.346 13 C -0.025 4.025 14 C -0.147 4.147 15 C 0.193 3.807 16 O -0.394 6.394 17 C -0.592 4.592 18 H 0.087 0.913 19 C -0.173 4.173 20 N -0.553 5.553 21 Si 0.785 3.215 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.206 1.206 25 C 0.014 3.986 26 N -0.280 5.280 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.279 0.721 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.226 0.774 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.645 10.798 -17.471 21.300 hybrid contribution 0.434 -1.147 0.980 1.570 sum -5.211 9.650 -16.491 19.805 Atomic orbital electron populations 1.21826 0.91176 1.02896 1.03018 1.19525 0.97198 0.94817 0.87369 1.21754 1.01099 0.92918 1.02874 1.21823 1.00594 1.00866 0.95618 1.23695 0.92313 0.86028 0.97718 1.77448 1.24762 1.25533 1.07792 1.86150 1.48211 0.97272 1.27203 1.24805 0.96187 0.92286 0.93552 1.41475 1.52695 1.08454 1.23053 1.15396 0.80600 0.82527 0.80287 1.90917 1.45192 1.52665 1.57858 1.47874 1.52473 1.08329 1.25936 1.22722 0.95596 0.86274 0.97916 1.22772 1.01803 0.96396 0.93755 1.19727 0.83765 0.88111 0.89102 1.86109 1.38013 1.89221 1.26033 1.21832 1.18977 1.17516 1.00863 0.91338 1.25754 0.98618 0.95849 0.97110 1.69779 1.43386 1.31321 1.10767 0.85484 0.78842 0.78818 0.78364 1.18908 1.21153 1.20553 1.22644 0.96750 0.96649 0.82546 1.67301 1.30443 1.12114 1.18113 0.93536 0.88714 0.92040 0.93084 0.89061 0.93105 0.92021 0.88726 0.93500 0.72132 0.89816 0.87380 0.89409 0.88723 0.77444 0.92071 0.93927 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.39 71.98 0.60 -1.38 16 2 C 0.02 0.30 0.95 -52.93 -0.05 0.25 16 3 C -0.13 -2.12 7.73 71.99 0.56 -1.57 16 4 C -0.13 -1.97 8.39 71.98 0.60 -1.37 16 5 C 0.29 7.73 6.07 139.40 0.85 8.58 16 6 N -0.52 -15.68 11.01 -60.49 -0.67 -16.35 16 7 S 0.27 9.01 21.17 -56.49 -1.20 7.82 16 8 C 0.31 9.28 8.50 178.72 1.52 10.80 16 9 N -0.60 -16.71 5.35 -325.37 -1.74 -18.45 16 10 C 0.71 25.37 8.45 179.06 1.51 26.89 16 11 O -0.59 -25.28 14.42 -3.95 -0.06 -25.34 16 12 N -0.61 -21.88 3.32 -829.32 -2.76 -24.64 16 13 C 0.10 2.62 6.58 86.93 0.57 3.19 16 14 C -0.11 -3.63 6.24 32.06 0.20 -3.43 16 15 C 0.23 10.30 0.85 -10.35 -0.01 10.30 16 16 O -0.59 -27.28 13.07 -148.98 -1.95 -29.23 16 17 C -0.55 -27.17 8.13 25.60 0.21 -26.96 16 18 H 0.07 3.28 7.78 -2.91 -0.02 3.26 16 19 C 0.03 1.40 5.28 84.65 0.45 1.85 16 20 N -0.91 -47.37 10.96 21.45 0.24 -47.14 16 21 Si 0.96 40.51 29.54 68.60 2.03 42.53 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.14 6.17 5.23 86.73 0.45 6.62 16 26 N -0.55 -14.95 10.30 -199.76 -2.06 -17.00 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 30 H 0.05 0.96 8.09 -2.39 -0.02 0.94 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.96 8.09 -2.39 -0.02 0.94 16 33 H 0.06 1.01 8.09 -2.39 -0.02 0.99 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.44 9.00 7.29 -92.71 -0.68 8.32 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.11 1.99 7.29 -2.39 -0.02 1.97 16 39 H 0.09 2.78 8.04 -2.39 -0.02 2.76 16 40 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.38 18.51 7.45 -74.06 -0.55 17.96 16 42 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 43 H 0.04 2.14 7.82 -2.38 -0.02 2.12 16 44 H 0.04 2.04 7.92 -2.39 -0.02 2.02 16 Total: -1.00 -61.43 372.53 -0.88 -62.32 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -0.19 Total: 31.72 kcal Atomic # 6 Polarization: 26.29 SS G_CDS: 7.47 Total: 33.76 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.99 Total: -123.58 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -2.00 Total: -54.57 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 9.01 SS G_CDS: -1.20 Total: 7.82 kcal Total: -61.43 -0.88 -62.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425265426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.138 kcal (2) G-P(sol) polarization free energy of solvation -61.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds