Wall clock time and date at job start Sat Apr 11 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30821 * 126.43873 * 2 1 4 4 N 1.28922 * 109.74623 * 180.11956 * 3 2 1 5 5 C 1.29734 * 109.42540 * 0.07357 * 4 3 2 6 6 N 1.34787 * 126.44409 * 179.97438 * 2 1 3 7 7 C 1.46222 * 128.60267 * 359.52403 * 6 2 1 8 8 C 1.53332 * 109.17282 * 161.75141 * 7 6 2 9 9 N 1.47084 * 109.23992 * 45.66662 * 8 7 6 10 10 S 1.65593 * 120.94601 * 116.40956 * 9 8 7 11 11 O 1.42100 * 104.28229 * 20.86879 * 10 9 8 12 12 O 1.42101 * 104.27628 * 148.72549 * 10 9 8 13 13 C 1.81402 * 104.45137 * 264.79493 * 10 9 8 14 14 C 1.53000 * 109.47343 * 172.06743 * 13 10 9 15 15 C 1.50700 * 115.54755 * 39.87002 * 14 13 10 16 16 H 1.08005 * 120.00297 * 266.35755 * 15 14 13 17 17 C 1.37879 * 119.99910 * 86.36252 * 15 14 13 18 18 N 1.31513 * 119.99785 * 1.88786 * 17 15 14 19 19 Si 1.86797 * 120.00150 * 181.89500 * 17 15 14 20 20 H 1.48501 * 109.47356 * 89.99324 * 19 17 15 21 21 H 1.48502 * 109.47336 * 209.99885 * 19 17 15 22 22 H 1.48502 * 109.46876 * 329.99691 * 19 17 15 23 23 C 1.53002 * 117.50238 * 254.16555 * 14 13 10 24 24 C 1.52997 * 117.50141 * 185.53940 * 14 13 10 25 25 C 1.47521 * 118.10463 * 296.43258 * 9 8 7 26 26 H 1.09004 * 109.95747 * 283.76287 * 25 9 8 27 27 C 1.52998 * 109.95462 * 162.48674 * 25 9 8 28 28 H 1.09001 * 109.46842 * 90.02799 * 1 2 3 29 29 H 1.08996 * 109.46668 * 210.02340 * 1 2 3 30 30 H 1.08993 * 109.47430 * 330.02518 * 1 2 3 31 31 H 1.09002 * 109.52468 * 41.84094 * 7 6 2 32 32 H 1.09004 * 109.51789 * 281.65980 * 7 6 2 33 33 H 1.08998 * 109.51306 * 285.73797 * 8 7 6 34 34 H 1.09008 * 109.55176 * 165.61790 * 8 7 6 35 35 H 1.08995 * 109.47269 * 292.07044 * 13 10 9 36 36 H 1.09005 * 109.46651 * 52.07403 * 13 10 9 37 37 H 0.97000 * 119.99726 * 185.02574 * 18 17 15 38 38 H 1.09001 * 117.49418 * 359.97438 * 23 14 13 39 39 H 1.08994 * 117.50268 * 145.02112 * 23 14 13 40 40 H 1.09002 * 117.50026 * 214.97948 * 24 14 13 41 41 H 1.09006 * 117.49794 * 0.02562 * 24 14 13 42 42 H 1.09003 * 109.47247 * 311.73068 * 27 25 9 43 43 H 1.08993 * 109.47249 * 71.73475 * 27 25 9 44 44 H 1.08998 * 109.47289 * 191.73589 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5189 0.6821 -0.0025 5 6 3.5808 -0.6137 -0.0058 6 7 2.3077 -1.0843 0.0005 7 6 1.9305 -2.4970 0.0106 8 6 3.1263 -3.3408 -0.4464 9 7 4.3394 -2.8758 0.2432 10 16 5.1610 -3.8684 1.2834 11 8 4.7546 -5.1785 0.9124 12 8 6.5164 -3.4595 1.1609 13 6 4.5132 -3.4414 2.9232 14 6 5.0527 -4.4306 3.9582 15 6 6.4948 -4.8319 3.7837 16 1 6.7439 -5.7227 3.2260 17 6 7.4963 -4.0618 4.3360 18 7 7.1917 -2.9979 5.0464 19 14 9.2858 -4.5297 4.0751 20 1 9.7962 -3.8693 2.8467 21 1 10.0884 -4.0886 5.2441 22 1 9.3957 -6.0032 3.9269 23 6 4.0856 -5.4864 4.4978 24 6 4.5185 -4.3193 5.3875 25 6 4.8030 -1.4999 -0.0178 26 1 5.2894 -1.4497 -0.9920 27 6 5.7773 -1.0606 1.0771 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5134 31 1 1.0924 -2.6551 -0.6683 32 1 1.6426 -2.7898 1.0204 33 1 3.2565 -3.2346 -1.5233 34 1 2.9480 -4.3883 -0.2028 35 1 4.8282 -2.4318 3.1867 36 1 3.4243 -3.4899 2.9075 37 1 7.8950 -2.4155 5.3736 38 1 3.0649 -5.4758 4.1157 39 1 4.4923 -6.4714 4.7266 40 1 5.2099 -4.5366 6.2016 41 1 3.7822 -3.5415 5.5904 42 1 5.3521 -1.2883 2.0546 43 1 6.7210 -1.5927 0.9585 44 1 5.9527 0.0123 0.9983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434674078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:53 Heat of formation + Delta-G solvation = 28.766038 kcal Electronic energy + Delta-G solvation = -29693.032475 eV Core-core repulsion = 25774.697038 eV Total energy + Delta-G solvation = -3918.335437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.34747 -38.99995 -38.57626 -38.20976 -36.80177 -35.95604 -34.10668 -33.15894 -32.61819 -30.08091 -29.30441 -28.38205 -27.56169 -25.41024 -24.66776 -22.96304 -22.01871 -21.79334 -21.02022 -19.68438 -18.62105 -18.54124 -17.85656 -17.77185 -17.08744 -16.98124 -16.56287 -16.30569 -15.87267 -15.55243 -15.25943 -14.93450 -14.82509 -14.35117 -14.18058 -13.94610 -13.77933 -13.73637 -13.48724 -13.35245 -13.19972 -13.08531 -13.00950 -12.87156 -12.79000 -12.52667 -12.43361 -12.39272 -12.12084 -11.91060 -11.76561 -11.55944 -11.41974 -11.11597 -10.99798 -10.57565 -10.41302 -10.06633 -9.90839 -8.23840 -6.43526 -0.64340 0.75283 1.36262 1.37609 1.43987 1.46595 1.73686 1.82749 2.38920 2.85446 3.06255 3.09935 3.19383 3.28229 3.35860 3.47712 3.59811 3.77441 3.92476 3.96274 4.12111 4.14217 4.21007 4.28666 4.49785 4.53213 4.56463 4.60622 4.67833 4.71811 4.75797 4.81422 4.89936 4.93963 4.97028 4.99380 5.12894 5.18174 5.32163 5.36016 5.45227 5.62164 5.66558 5.90410 6.18053 6.67752 7.35787 7.65525 8.82489 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.004474 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.753292 B = 6256.583204 C = 6541.182737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.187 3.813 3 N -0.348 5.348 4 N -0.317 5.317 5 C 0.163 3.837 6 N -0.462 5.462 7 C 0.077 3.923 8 C 0.090 3.910 9 N -1.012 6.012 10 S 2.638 3.362 11 O -0.982 6.982 12 O -0.968 6.968 13 C -0.559 4.559 14 C 0.013 3.987 15 C -0.554 4.554 16 H 0.051 0.949 17 C 0.061 3.939 18 N -0.884 5.884 19 Si 0.921 3.079 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.266 1.266 23 C -0.186 4.186 24 C -0.140 4.140 25 C 0.256 3.744 26 H 0.124 0.876 27 C -0.200 4.200 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.156 0.844 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.266 0.734 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.109 0.891 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 1.222 -11.144 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 N -0.188 5.188 4 N -0.156 5.156 5 C -0.108 4.108 6 N -0.153 5.153 7 C -0.045 4.045 8 C -0.034 4.034 9 N -0.850 5.850 10 S 2.737 3.263 11 O -0.973 6.973 12 O -0.958 6.958 13 C -0.691 4.691 14 C 0.011 3.989 15 C -0.591 4.591 16 H 0.070 0.930 17 C -0.144 4.144 18 N -0.519 5.519 19 Si 0.746 3.254 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.190 1.190 23 C -0.223 4.223 24 C -0.179 4.179 25 C 0.148 3.852 26 H 0.141 0.859 27 C -0.258 4.258 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.173 0.827 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.128 0.872 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.128 2.110 -11.276 18.986 hybrid contribution 0.680 -0.741 0.760 1.261 sum -14.448 1.369 -10.516 17.922 Atomic orbital electron populations 1.20485 0.79913 1.06063 1.05811 1.25627 0.98817 0.82026 1.01666 1.74389 0.96316 1.25769 1.22350 1.73918 1.13202 1.08976 1.19529 1.24901 0.88264 0.92281 1.05320 1.46061 1.05715 1.09717 1.53840 1.22912 1.00290 0.74622 1.06711 1.22154 0.81348 1.00352 0.99570 1.58484 1.41536 1.24541 1.60401 1.04159 0.74017 0.72591 0.75521 1.93432 1.83884 1.37389 1.82566 1.93452 1.34549 1.81972 1.85876 1.30109 1.10103 1.09084 1.19805 1.18328 0.92450 0.95455 0.92678 1.20754 0.90181 1.11223 1.36949 0.93043 1.25398 1.01849 0.94743 0.92403 1.70026 1.34144 1.14217 1.33525 0.86109 0.81737 0.79342 0.78239 1.19898 1.19919 1.19046 1.23222 0.99028 0.94352 1.05677 1.22401 1.01455 0.99327 0.94678 1.19394 0.87260 0.76554 1.02023 0.85893 1.22811 1.01267 1.05186 0.96559 0.87329 0.87606 0.88520 0.82651 0.87430 0.87411 0.84876 0.86604 0.85209 0.92499 0.87812 0.90079 0.91768 0.90195 0.92905 0.87217 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.28 71.24 0.73 0.10 16 2 C 0.19 4.11 8.06 138.12 1.11 5.22 16 3 N -0.35 -10.91 12.23 -50.42 -0.62 -11.53 16 4 N -0.32 -10.79 12.12 -50.18 -0.61 -11.40 16 5 C 0.16 4.70 7.17 138.22 0.99 5.69 16 6 N -0.46 -9.96 3.11 -504.50 -1.57 -11.53 16 7 C 0.08 0.98 6.87 86.54 0.59 1.58 16 8 C 0.09 1.58 6.42 86.38 0.55 2.13 16 9 N -1.01 -27.83 3.21 -492.56 -1.58 -29.42 16 10 S 2.64 100.81 3.95 -56.49 -0.22 100.59 16 11 O -0.98 -39.70 16.49 -127.65 -2.11 -41.80 16 12 O -0.97 -44.28 13.59 -127.65 -1.74 -46.02 16 13 C -0.56 -21.71 5.98 71.98 0.43 -21.28 16 14 C 0.01 0.59 1.73 -52.93 -0.09 0.50 16 15 C -0.55 -29.65 6.99 25.60 0.18 -29.47 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 17 C 0.06 3.32 5.42 84.66 0.46 3.78 16 18 N -0.88 -48.62 12.64 21.45 0.27 -48.35 16 19 Si 0.92 44.07 29.54 68.60 2.03 46.10 16 20 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 23 C -0.19 -7.36 9.88 30.60 0.30 -7.06 16 24 C -0.14 -6.13 9.16 30.59 0.28 -5.84 16 25 C 0.26 7.33 3.75 44.14 0.17 7.50 16 26 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 27 C -0.20 -6.78 7.93 71.98 0.57 -6.21 16 28 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.48 8.02 -2.39 -0.02 0.46 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.13 2.16 6.79 -2.38 -0.02 2.14 16 35 H 0.12 4.83 5.87 -2.39 -0.01 4.82 16 36 H 0.13 3.89 7.95 -2.39 -0.02 3.87 16 37 H 0.27 14.04 8.32 -92.71 -0.77 13.27 16 38 H 0.10 3.32 8.08 -2.39 -0.02 3.30 16 39 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 42 H 0.05 1.93 5.12 -2.39 -0.01 1.92 16 43 H 0.11 4.16 5.69 -2.39 -0.01 4.15 16 44 H 0.09 3.01 8.05 -2.39 -0.02 2.99 16 Total: -1.00 -77.05 362.83 1.16 -75.90 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 1.02 Total: 20.82 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 6.28 Total: -43.36 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -4.11 Total: -112.22 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -3.84 Total: -87.82 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 100.81 SS G_CDS: -0.22 Total: 100.59 kcal Total: -77.05 1.16 -75.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434674078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.663 kcal (2) G-P(sol) polarization free energy of solvation -77.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds