Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30303 * 126.34607 * 2 1 4 4 N 1.28529 * 110.05141 * 180.02562 * 3 2 1 5 5 C 1.31221 * 109.86269 * 0.02562 * 4 3 2 6 6 N 1.38579 * 126.47363 * 179.97438 * 5 4 3 7 7 N 1.40102 * 119.99727 * 5.06067 * 6 5 4 8 8 C 1.34784 * 119.99744 * 185.07915 * 7 6 5 9 9 O 1.21668 * 120.00038 * 4.58808 * 8 7 6 10 10 C 1.46883 * 119.99926 * 184.59159 * 8 7 6 11 11 C 1.36128 * 125.43666 * 185.53324 * 10 8 7 12 12 C 1.41699 * 107.74682 * 179.97438 * 11 10 8 13 13 C 1.40019 * 133.34684 * 179.97438 * 12 11 10 14 14 C 1.36586 * 119.82832 * 179.14481 * 13 12 11 15 15 C 1.38858 * 120.59484 * 0.77880 * 14 13 12 16 16 C 1.37840 * 120.63533 * 359.49626 * 15 14 13 17 17 C 1.39082 * 119.81561 * 0.02562 * 16 15 14 18 18 N 1.37834 * 133.16587 * 180.02562 * 17 16 15 19 19 C 1.36893 * 125.62067 * 359.95592 * 18 17 16 20 20 H 1.07999 * 119.99773 * 126.66525 * 19 18 17 21 21 C 1.39009 * 119.99922 * 306.66936 * 19 18 17 22 22 N 1.31356 * 119.99898 * 3.50958 * 21 19 18 23 23 Si 1.86795 * 119.99978 * 183.23165 * 21 19 18 24 24 H 1.48506 * 109.47366 * 185.28460 * 23 21 19 25 25 H 1.48507 * 109.47437 * 305.28627 * 23 21 19 26 26 H 1.48503 * 109.47031 * 65.28534 * 23 21 19 27 27 N 1.36447 * 107.05098 * 0.25617 * 5 4 3 28 28 C 1.46507 * 127.13535 * 179.73461 * 27 5 4 29 29 H 1.08993 * 109.47335 * 89.97128 * 1 2 3 30 30 H 1.09003 * 109.46790 * 209.97684 * 1 2 3 31 31 H 1.09003 * 109.46688 * 329.97155 * 1 2 3 32 32 H 0.96996 * 120.00163 * 185.05644 * 6 5 4 33 33 H 0.96992 * 120.00253 * 5.07802 * 7 6 5 34 34 H 1.07994 * 126.12140 * 0.02562 * 11 10 8 35 35 H 1.08003 * 120.08794 * 359.97438 * 13 12 11 36 36 H 1.08002 * 119.70461 * 180.29630 * 14 13 12 37 37 H 1.08005 * 119.67855 * 179.51378 * 15 14 13 38 38 H 1.08004 * 120.09560 * 179.97438 * 16 15 14 39 39 H 0.96997 * 120.00046 * 354.18822 * 22 21 19 40 40 H 1.09007 * 109.46857 * 90.03079 * 28 27 5 41 41 H 1.08994 * 109.47061 * 210.02647 * 28 27 5 42 42 H 1.08999 * 109.47200 * 330.03375 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5129 0.6889 -0.0005 5 6 3.5945 -0.6208 -0.0015 6 7 4.7580 -1.3736 -0.0028 7 7 6.0027 -0.7395 0.1038 8 6 7.1371 -1.4599 -0.0001 9 8 7.0825 -2.6451 -0.2694 10 6 8.4393 -0.8141 0.2117 11 6 9.6521 -1.4052 0.0311 12 6 10.6497 -0.4473 0.3395 13 6 12.0494 -0.4823 0.3363 14 6 12.7577 0.6354 0.6751 15 6 12.1022 1.8042 1.0391 16 6 10.7251 1.8613 1.0552 17 6 9.9823 0.7389 0.7047 18 7 8.6287 0.4910 0.6254 19 6 7.6356 1.3909 0.9049 20 1 6.8605 1.5827 0.1777 21 6 7.6250 2.0577 2.1245 22 7 8.6046 1.8764 2.9807 23 14 6.2217 3.2174 2.5427 24 1 6.5072 3.8952 3.8328 25 1 6.0833 4.2344 1.4693 26 1 4.9587 2.4448 2.6583 27 7 2.3175 -1.1013 -0.0073 28 6 1.9010 -2.5059 -0.0159 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 4.7106 -2.3395 -0.0774 33 1 6.0482 0.2179 0.2525 34 1 9.8233 -2.4218 -0.2906 35 1 12.5679 -1.3866 0.0538 36 1 13.8373 0.6076 0.6674 37 1 12.6770 2.6770 1.3118 38 1 10.2242 2.7748 1.3401 39 1 9.2908 1.2152 2.7997 40 1 1.7945 -2.8595 1.0097 41 1 0.9461 -2.5985 -0.5331 42 1 2.6526 -3.1046 -0.5304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470375365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = 151.890250 kcal Electronic energy + Delta-G solvation = -29187.661153 eV Core-core repulsion = 25171.513583 eV Total energy + Delta-G solvation = -4016.147570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.82462 -40.83256 -38.93965 -36.22431 -35.97556 -35.05054 -33.83832 -32.43869 -30.70876 -30.46115 -29.04588 -28.14268 -27.52516 -26.93673 -24.84952 -23.53157 -21.54969 -21.40828 -21.01868 -20.36654 -19.76605 -18.72058 -17.62484 -17.22873 -16.59362 -16.44697 -15.76245 -15.63232 -15.04460 -14.86979 -14.43718 -14.17818 -14.00221 -13.85496 -13.76530 -13.27013 -13.24198 -13.11594 -13.09399 -12.78655 -12.64499 -12.21741 -11.95775 -11.75077 -11.40264 -11.05924 -10.97507 -10.56848 -10.33999 -10.30302 -10.18910 -10.17912 -9.95947 -9.85675 -9.25297 -9.21197 -8.85983 -7.65766 -7.42671 -7.06338 -6.70760 -4.88364 1.53425 1.56941 1.93354 2.52804 2.77126 2.82697 3.09219 3.19531 3.25786 3.41848 3.84898 4.06685 4.10676 4.29180 4.37334 4.44726 4.62531 4.76217 4.77911 4.81390 5.02118 5.26166 5.32136 5.41667 5.57271 5.62475 5.75929 5.85151 5.91975 6.05257 6.18562 6.31892 6.42507 6.53748 6.62502 6.78556 6.86707 7.04358 7.21955 7.28816 7.38096 7.40257 7.58111 7.64281 7.78778 7.95720 8.13144 8.58556 8.69220 8.98839 9.00658 10.14769 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003762 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.580797 B = 7440.170987 C = 9048.690997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.153 3.847 3 N -0.266 5.266 4 N -0.337 5.337 5 C 0.451 3.549 6 N -0.507 5.507 7 N -0.493 5.493 8 C 0.597 3.403 9 O -0.562 6.562 10 C -0.007 4.007 11 C -0.153 4.153 12 C -0.130 4.130 13 C -0.079 4.079 14 C -0.158 4.158 15 C -0.130 4.130 16 C -0.083 4.083 17 C 0.081 3.919 18 N -0.273 5.273 19 C -0.451 4.451 20 H 0.104 0.896 21 C 0.036 3.964 22 N -0.834 5.834 23 Si 1.074 2.926 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.268 1.268 27 N -0.503 5.503 28 C 0.076 3.924 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.434 0.566 33 H 0.444 0.556 34 H 0.138 0.862 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.292 0.708 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.745 -5.802 -3.637 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.115 4.115 3 N -0.104 5.104 4 N -0.185 5.185 5 C 0.094 3.906 6 N -0.245 5.245 7 N -0.252 5.252 8 C 0.387 3.613 9 O -0.440 6.440 10 C -0.123 4.123 11 C -0.181 4.181 12 C -0.135 4.135 13 C -0.098 4.098 14 C -0.177 4.177 15 C -0.150 4.150 16 C -0.103 4.103 17 C -0.033 4.033 18 N 0.061 4.939 19 C -0.578 4.578 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.462 5.462 23 Si 0.896 3.104 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.192 1.192 27 N -0.206 5.206 28 C -0.068 4.068 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.277 0.723 33 H 0.300 0.700 34 H 0.156 0.844 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.113 -3.746 -2.553 12.002 hybrid contribution 0.230 -2.655 -1.055 2.866 sum -10.883 -6.401 -3.607 13.131 Atomic orbital electron populations 1.20090 0.83721 1.04173 1.03508 1.24512 0.96200 0.81816 1.08982 1.73940 0.95971 1.23812 1.16718 1.74669 1.11721 1.04352 1.27775 1.20585 0.79749 0.89731 1.00512 1.41340 0.93381 1.06057 1.83690 1.46122 0.93082 1.12314 1.73685 1.17339 0.81495 0.85853 0.76645 1.90728 1.86859 1.15047 1.51366 1.19894 0.92249 0.86231 1.13883 1.20416 0.89247 0.99035 1.09406 1.18024 0.93184 0.94310 1.07990 1.20138 0.91651 0.97698 1.00314 1.20370 0.98560 0.93681 1.05131 1.20654 0.93332 0.97846 1.03185 1.20234 0.92874 0.96851 1.00362 1.18620 0.84117 0.95793 1.04820 1.40138 1.03551 1.06231 1.43946 1.20487 1.07385 1.25175 1.04794 0.87860 1.26948 1.01266 0.98914 0.90878 1.70648 1.09855 1.28568 1.37134 0.83404 0.73673 0.75850 0.77452 1.19747 1.19656 1.19246 1.45862 1.04534 1.08708 1.61527 1.22025 1.02707 0.78054 1.03990 0.90115 0.90842 0.88782 0.72264 0.70000 0.84431 0.87258 0.87357 0.87001 0.86106 0.89412 0.90136 0.88786 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.09 36.00 0.36 -0.05 16 2 C 0.15 2.03 8.07 -154.01 -1.24 0.78 16 3 N -0.27 -4.77 12.18 32.99 0.40 -4.37 16 4 N -0.34 -6.74 11.80 30.31 0.36 -6.39 16 5 C 0.45 7.73 8.81 -318.88 -2.81 4.92 16 6 N -0.51 -8.84 6.41 30.31 0.19 -8.65 16 7 N -0.49 -10.33 6.20 30.31 0.19 -10.14 16 8 C 0.60 13.34 7.89 -12.76 -0.10 13.24 16 9 O -0.56 -12.61 16.71 5.22 0.09 -12.52 16 10 C -0.01 -0.17 6.77 -82.25 -0.56 -0.73 16 11 C -0.15 -3.41 10.55 -39.02 -0.41 -3.82 16 12 C -0.13 -2.91 6.16 -106.89 -0.66 -3.57 16 13 C -0.08 -1.52 10.06 -39.51 -0.40 -1.91 16 14 C -0.16 -2.85 9.97 -39.95 -0.40 -3.25 16 15 C -0.13 -2.50 10.02 -39.50 -0.40 -2.90 16 16 C -0.08 -1.88 8.26 -39.41 -0.33 -2.21 16 17 C 0.08 1.95 5.24 -83.84 -0.44 1.51 16 18 N -0.27 -6.79 2.64 -56.08 -0.15 -6.94 16 19 C -0.45 -11.28 7.77 -15.01 -0.12 -11.39 16 20 H 0.10 2.55 6.18 -52.49 -0.32 2.22 16 21 C 0.04 0.91 5.17 -17.47 -0.09 0.82 16 22 N -0.83 -22.20 12.39 55.50 0.69 -21.51 16 23 Si 1.07 22.91 29.92 -169.99 -5.09 17.83 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 N -0.50 -6.37 3.21 -121.45 -0.39 -6.76 16 28 C 0.08 0.53 10.82 59.85 0.65 1.18 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.36 7.96 -51.93 -0.41 -0.05 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.43 6.51 7.45 -182.60 -1.36 5.15 16 33 H 0.44 9.92 4.21 -182.60 -0.77 9.15 16 34 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 35 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 38 H 0.12 2.85 7.21 -52.48 -0.38 2.47 16 39 H 0.29 8.01 5.53 -40.82 -0.23 7.79 16 40 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.09 0.39 7.91 -51.93 -0.41 -0.02 16 42 H 0.08 0.53 7.60 -51.93 -0.39 0.14 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -32.59 359.11 -11.26 -43.85 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -6.03 Total: 17.58 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -6.93 Total: -7.39 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 1.29 Total: -64.75 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.09 Total: 17.83 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.59 -11.26 -43.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470375365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.740 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds