Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30303 * 126.34607 * 2 1 4 4 N 1.28529 * 110.05141 * 180.02562 * 3 2 1 5 5 C 1.31221 * 109.86269 * 0.02562 * 4 3 2 6 6 N 1.38579 * 126.47363 * 179.97438 * 5 4 3 7 7 N 1.40102 * 119.99727 * 5.06067 * 6 5 4 8 8 C 1.34784 * 119.99744 * 185.07915 * 7 6 5 9 9 O 1.21668 * 120.00038 * 4.58808 * 8 7 6 10 10 C 1.46883 * 119.99926 * 184.59159 * 8 7 6 11 11 C 1.36128 * 125.43666 * 185.53324 * 10 8 7 12 12 C 1.41699 * 107.74682 * 179.97438 * 11 10 8 13 13 C 1.40019 * 133.34684 * 179.97438 * 12 11 10 14 14 C 1.36586 * 119.82832 * 179.14481 * 13 12 11 15 15 C 1.38858 * 120.59484 * 0.77880 * 14 13 12 16 16 C 1.37840 * 120.63533 * 359.49626 * 15 14 13 17 17 C 1.39082 * 119.81561 * 0.02562 * 16 15 14 18 18 N 1.37834 * 133.16587 * 180.02562 * 17 16 15 19 19 C 1.36893 * 125.62067 * 359.95592 * 18 17 16 20 20 H 1.07999 * 119.99773 * 126.66525 * 19 18 17 21 21 C 1.39009 * 119.99922 * 306.66936 * 19 18 17 22 22 N 1.31356 * 119.99898 * 3.50958 * 21 19 18 23 23 Si 1.86795 * 119.99978 * 183.23165 * 21 19 18 24 24 H 1.48506 * 109.47366 * 185.28460 * 23 21 19 25 25 H 1.48507 * 109.47437 * 305.28627 * 23 21 19 26 26 H 1.48503 * 109.47031 * 65.28534 * 23 21 19 27 27 N 1.36447 * 107.05098 * 0.25617 * 5 4 3 28 28 C 1.46507 * 127.13535 * 179.73461 * 27 5 4 29 29 H 1.08993 * 109.47335 * 89.97128 * 1 2 3 30 30 H 1.09003 * 109.46790 * 209.97684 * 1 2 3 31 31 H 1.09003 * 109.46688 * 329.97155 * 1 2 3 32 32 H 0.96996 * 120.00163 * 185.05644 * 6 5 4 33 33 H 0.96992 * 120.00253 * 5.07802 * 7 6 5 34 34 H 1.07994 * 126.12140 * 0.02562 * 11 10 8 35 35 H 1.08003 * 120.08794 * 359.97438 * 13 12 11 36 36 H 1.08002 * 119.70461 * 180.29630 * 14 13 12 37 37 H 1.08005 * 119.67855 * 179.51378 * 15 14 13 38 38 H 1.08004 * 120.09560 * 179.97438 * 16 15 14 39 39 H 0.96997 * 120.00046 * 354.18822 * 22 21 19 40 40 H 1.09007 * 109.46857 * 90.03079 * 28 27 5 41 41 H 1.08994 * 109.47061 * 210.02647 * 28 27 5 42 42 H 1.08999 * 109.47200 * 330.03375 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5129 0.6889 -0.0005 5 6 3.5945 -0.6208 -0.0015 6 7 4.7580 -1.3736 -0.0028 7 7 6.0027 -0.7395 0.1038 8 6 7.1371 -1.4599 -0.0001 9 8 7.0825 -2.6451 -0.2694 10 6 8.4393 -0.8141 0.2117 11 6 9.6521 -1.4052 0.0311 12 6 10.6497 -0.4473 0.3395 13 6 12.0494 -0.4823 0.3363 14 6 12.7577 0.6354 0.6751 15 6 12.1022 1.8042 1.0391 16 6 10.7251 1.8613 1.0552 17 6 9.9823 0.7389 0.7047 18 7 8.6287 0.4910 0.6254 19 6 7.6356 1.3909 0.9049 20 1 6.8605 1.5827 0.1777 21 6 7.6250 2.0577 2.1245 22 7 8.6046 1.8764 2.9807 23 14 6.2217 3.2174 2.5427 24 1 6.5072 3.8952 3.8328 25 1 6.0833 4.2344 1.4693 26 1 4.9587 2.4448 2.6583 27 7 2.3175 -1.1013 -0.0073 28 6 1.9010 -2.5059 -0.0159 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 4.7106 -2.3395 -0.0774 33 1 6.0482 0.2179 0.2525 34 1 9.8233 -2.4218 -0.2906 35 1 12.5679 -1.3866 0.0538 36 1 13.8373 0.6076 0.6674 37 1 12.6770 2.6770 1.3118 38 1 10.2242 2.7748 1.3401 39 1 9.2908 1.2152 2.7997 40 1 1.7945 -2.8595 1.0097 41 1 0.9461 -2.5985 -0.5331 42 1 2.6526 -3.1046 -0.5304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470375365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = 134.630178 kcal Electronic energy + Delta-G solvation = -29188.409606 eV Core-core repulsion = 25171.513583 eV Total energy + Delta-G solvation = -4016.896023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.98199 -42.54277 -40.59299 -37.83461 -37.49002 -36.08454 -35.64238 -33.68623 -32.39855 -31.74414 -30.65593 -29.68753 -28.41081 -27.99461 -26.69246 -25.11893 -22.91101 -22.83132 -22.52131 -21.82589 -21.34631 -20.37292 -19.07081 -18.71940 -17.77676 -17.66974 -17.54505 -16.92687 -16.77123 -16.42660 -16.06024 -15.76851 -15.53474 -15.07745 -14.90836 -14.78723 -14.44955 -14.35211 -14.11052 -13.86702 -13.71865 -13.62589 -13.30057 -13.04267 -12.82506 -12.61481 -12.48952 -12.22550 -12.12799 -12.01484 -11.63330 -11.57225 -11.33053 -11.18618 -11.07054 -10.64664 -10.56262 -9.48379 -8.98397 -8.67874 -8.46160 -6.81265 -0.11598 0.24188 0.80809 0.92682 1.16259 1.42473 1.49778 1.69877 1.71795 1.84376 2.10513 2.30546 2.52676 2.70942 2.82317 3.14497 3.52184 3.69459 3.70981 3.98936 4.03971 4.28743 4.30507 4.37357 4.52263 4.55449 4.60216 4.64338 4.73493 4.75886 4.81905 4.93737 4.98882 5.06135 5.11161 5.23819 5.36930 5.41100 5.65061 5.75343 5.79710 5.80664 5.94822 5.98544 6.11246 6.39526 6.43293 6.75498 7.02591 7.18394 7.76970 8.17566 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003762 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.580797 B = 7440.170987 C = 9048.690997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.179 3.821 3 N -0.323 5.323 4 N -0.387 5.387 5 C 0.431 3.569 6 N -0.502 5.502 7 N -0.497 5.497 8 C 0.595 3.405 9 O -0.569 6.569 10 C -0.035 4.035 11 C -0.149 4.149 12 C -0.149 4.149 13 C -0.076 4.076 14 C -0.151 4.151 15 C -0.112 4.112 16 C -0.120 4.120 17 C 0.057 3.943 18 N -0.296 5.296 19 C -0.455 4.455 20 H 0.096 0.904 21 C 0.007 3.993 22 N -0.858 5.858 23 Si 1.114 2.886 24 H -0.267 1.267 25 H -0.260 1.260 26 H -0.275 1.275 27 N -0.492 5.492 28 C 0.062 3.938 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.443 0.557 33 H 0.438 0.562 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.279 0.721 40 H 0.097 0.903 41 H 0.132 0.868 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 -7.294 -4.062 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 N -0.161 5.161 4 N -0.235 5.235 5 C 0.073 3.927 6 N -0.243 5.243 7 N -0.252 5.252 8 C 0.384 3.616 9 O -0.449 6.449 10 C -0.150 4.150 11 C -0.177 4.177 12 C -0.153 4.153 13 C -0.095 4.095 14 C -0.169 4.169 15 C -0.132 4.132 16 C -0.140 4.140 17 C -0.056 4.056 18 N 0.037 4.963 19 C -0.582 4.582 20 H 0.113 0.887 21 C -0.204 4.204 22 N -0.487 5.487 23 Si 0.933 3.067 24 H -0.192 1.192 25 H -0.185 1.185 26 H -0.201 1.201 27 N -0.193 5.193 28 C -0.079 4.079 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.289 0.711 33 H 0.292 0.708 34 H 0.176 0.824 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.150 0.850 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.499 -5.259 -2.992 12.994 hybrid contribution 0.328 -2.277 -1.005 2.510 sum -11.172 -7.536 -3.996 14.056 Atomic orbital electron populations 1.20442 0.79290 1.06118 1.05580 1.25675 0.98178 0.80890 1.04356 1.73845 0.95829 1.26149 1.20281 1.74502 1.13524 1.06424 1.29075 1.20570 0.80991 0.89575 1.01591 1.41210 0.92237 1.06263 1.84613 1.45885 0.94502 1.12095 1.72745 1.17220 0.81671 0.85777 0.76972 1.90692 1.87037 1.15005 1.52185 1.20258 0.93511 0.86517 1.14669 1.20746 0.88888 0.99799 1.08247 1.18419 0.94845 0.93511 1.08567 1.20608 0.90236 0.99650 0.98999 1.20876 1.00826 0.92278 1.02961 1.21122 0.92065 0.99625 1.00388 1.20265 0.94440 0.96019 1.03297 1.19089 0.84177 0.97147 1.05220 1.40229 1.03898 1.06626 1.45569 1.20478 1.07630 1.25458 1.04615 0.88678 1.27906 1.02029 0.99690 0.90774 1.70717 1.10613 1.29563 1.37848 0.82900 0.71305 0.74811 0.77709 1.19171 1.18472 1.20068 1.46163 1.02508 1.10788 1.59867 1.22546 1.04660 0.74809 1.05854 0.87762 0.87308 0.88402 0.71102 0.70831 0.82419 0.83662 0.82700 0.83913 0.88404 0.90826 0.88458 0.84996 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.09 71.23 0.72 0.09 16 2 C 0.18 4.46 8.07 137.64 1.11 5.57 16 3 N -0.32 -11.79 12.18 -49.54 -0.60 -12.40 16 4 N -0.39 -16.16 11.80 -58.01 -0.68 -16.84 16 5 C 0.43 15.04 8.81 260.11 2.29 17.34 16 6 N -0.50 -18.01 6.41 -58.02 -0.37 -18.38 16 7 N -0.50 -21.84 6.20 -176.24 -1.09 -22.93 16 8 C 0.59 27.55 7.89 86.50 0.68 28.23 16 9 O -0.57 -26.00 16.71 -4.25 -0.07 -26.07 16 10 C -0.04 -1.73 6.77 39.91 0.27 -1.46 16 11 C -0.15 -6.67 10.55 22.63 0.24 -6.43 16 12 C -0.15 -6.61 6.16 -21.34 -0.13 -6.74 16 13 C -0.08 -2.71 10.06 22.32 0.22 -2.49 16 14 C -0.15 -4.86 9.97 22.03 0.22 -4.64 16 15 C -0.11 -4.11 10.02 22.32 0.22 -3.88 16 16 C -0.12 -5.54 8.26 22.38 0.18 -5.36 16 17 C 0.06 2.84 5.24 39.06 0.20 3.05 16 18 N -0.30 -15.46 2.64 -331.34 -0.87 -16.33 16 19 C -0.45 -24.11 7.77 84.09 0.65 -23.45 16 20 H 0.10 5.06 6.18 -2.91 -0.02 5.04 16 21 C 0.01 0.36 5.17 84.95 0.44 0.80 16 22 N -0.86 -47.81 12.39 21.67 0.27 -47.54 16 23 Si 1.11 48.74 29.92 68.60 2.05 50.80 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 N -0.49 -11.74 3.21 -538.17 -1.73 -13.47 16 28 C 0.06 0.68 10.82 127.77 1.38 2.06 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 0.52 7.96 -2.39 -0.02 0.50 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.44 13.47 7.45 -213.32 -1.59 11.88 16 33 H 0.44 20.84 4.21 -213.33 -0.90 19.94 16 34 H 0.16 6.22 8.06 -2.91 -0.02 6.20 16 35 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 38 H 0.10 4.88 7.21 -2.91 -0.02 4.86 16 39 H 0.28 16.09 5.53 -92.71 -0.51 15.58 16 40 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.13 0.47 7.91 -2.39 -0.02 0.46 16 42 H 0.09 0.93 7.60 -2.39 -0.02 0.91 16 Total: -1.00 -77.30 359.11 4.48 -72.82 By element: Atomic # 1 Polarization: 48.82 SS G_CDS: -1.13 Total: 47.69 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 8.71 Total: 2.66 kcal Atomic # 7 Polarization: -142.81 SS G_CDS: -5.08 Total: -147.90 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.07 Total: -26.07 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.05 Total: 50.80 kcal Total: -77.30 4.48 -72.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470375365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.450 kcal (2) G-P(sol) polarization free energy of solvation -77.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds