Wall clock time and date at job start Sat Apr 11 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33467 * 125.50060 * 2 1 4 4 C 1.30326 * 109.72639 * 179.97438 * 3 2 1 5 5 N 1.34671 * 108.04425 * 0.08143 * 4 3 2 6 6 N 1.30981 * 125.49532 * 179.97438 * 2 1 3 7 7 C 1.46307 * 125.04559 * 179.84796 * 5 4 3 8 8 C 1.53303 * 108.77156 * 342.97921 * 7 5 4 9 9 H 1.08989 * 109.46820 * 290.13979 * 8 7 5 10 10 N 1.46502 * 109.46654 * 170.14161 * 8 7 5 11 11 S 1.65598 * 119.99595 * 94.98818 * 10 8 7 12 12 O 1.42099 * 104.28072 * 308.92754 * 11 10 8 13 13 O 1.42098 * 104.27641 * 181.06948 * 11 10 8 14 14 C 1.81403 * 104.44934 * 65.00158 * 11 10 8 15 15 C 1.52996 * 109.47160 * 173.77304 * 14 11 10 16 16 C 1.50708 * 115.54936 * 65.27096 * 15 14 11 17 17 H 1.08005 * 119.99268 * 268.54698 * 16 15 14 18 18 C 1.37874 * 120.00419 * 88.54647 * 16 15 14 19 19 N 1.31513 * 120.00480 * 174.69793 * 18 16 15 20 20 Si 1.86803 * 119.99709 * 354.70362 * 18 16 15 21 21 H 1.48503 * 109.47278 * 92.55505 * 20 18 16 22 22 H 1.48501 * 109.46881 * 212.55184 * 20 18 16 23 23 H 1.48499 * 109.47217 * 332.55286 * 20 18 16 24 24 C 1.52995 * 117.50295 * 279.59627 * 15 14 11 25 25 C 1.52996 * 117.50099 * 210.93551 * 15 14 11 26 26 C 1.53165 * 109.48479 * 50.14258 * 8 7 5 27 27 C 1.50932 * 127.90123 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.46638 * 90.02614 * 1 2 3 29 29 H 1.09002 * 109.46921 * 210.02585 * 1 2 3 30 30 H 1.08996 * 109.46684 * 330.02393 * 1 2 3 31 31 H 1.09002 * 109.58656 * 223.19488 * 7 5 4 32 32 H 1.08998 * 109.58125 * 102.76611 * 7 5 4 33 33 H 0.96993 * 120.00158 * 274.98792 * 10 8 7 34 34 H 1.09009 * 109.46823 * 293.77295 * 14 11 10 35 35 H 1.08995 * 109.47346 * 53.76758 * 14 11 10 36 36 H 0.96992 * 120.00519 * 179.97438 * 19 18 16 37 37 H 1.09004 * 117.49256 * 0.02562 * 24 15 14 38 38 H 1.08997 * 117.50019 * 145.01546 * 24 15 14 39 39 H 1.08999 * 117.50639 * 214.98390 * 25 15 14 40 40 H 1.09003 * 117.50059 * 359.97438 * 25 15 14 41 41 H 1.09000 * 109.50972 * 50.74474 * 26 8 7 42 42 H 1.08992 * 109.51090 * 170.83761 * 26 8 7 43 43 H 1.09006 * 109.71727 * 44.40686 * 27 4 3 44 44 H 1.08998 * 109.75639 * 283.77669 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0866 0.0000 4 6 3.5363 0.7323 0.0005 5 7 3.5896 -0.6134 -0.0009 6 7 2.2676 -1.0664 0.0005 7 6 4.8198 -1.4054 -0.0040 8 6 5.9851 -0.5051 -0.4302 9 1 5.8838 -0.2554 -1.4863 10 7 7.2510 -1.2101 -0.2143 11 16 7.9573 -2.0434 -1.4589 12 8 6.9173 -2.8714 -1.9610 13 8 9.1286 -2.6060 -0.8839 14 6 8.3936 -0.7649 -2.6696 15 6 9.1988 -1.3942 -3.8082 16 6 8.4549 -2.3951 -4.6544 17 1 8.4807 -3.4440 -4.3981 18 6 7.7415 -1.9719 -5.7557 19 7 7.1791 -2.8533 -6.5534 20 14 7.5739 -0.1464 -6.1148 21 1 8.6608 0.2794 -7.0328 22 1 6.2578 0.1140 -6.7516 23 1 7.6698 0.6186 -4.8457 24 6 10.6890 -1.6425 -3.5665 25 6 10.2423 -0.5180 -4.5040 26 6 5.9684 0.7805 0.4022 27 6 4.7523 1.6263 0.0013 28 1 -0.3632 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3632 0.8902 0.5135 31 1 4.7204 -2.2320 -0.7076 32 1 5.0060 -1.7950 0.9968 33 1 7.6755 -1.1888 0.6575 34 1 7.4835 -0.3192 -3.0713 35 1 8.9921 0.0060 -2.1842 36 1 6.6769 -2.5556 -7.3280 37 1 11.0957 -1.3578 -2.5961 38 1 11.1315 -2.5295 -4.0197 39 1 10.3911 -0.6655 -5.5736 40 1 10.3549 0.5071 -4.1509 41 1 5.9040 0.5280 1.4606 42 1 6.8820 1.3455 0.2177 43 1 4.6140 2.4347 0.7194 44 1 4.9049 2.0416 -0.9949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474928358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:03 Heat of formation + Delta-G solvation = 40.518211 kcal Electronic energy + Delta-G solvation = -28444.850720 eV Core-core repulsion = 24527.024896 eV Total energy + Delta-G solvation = -3917.825824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43557 -38.20937 -37.24068 -36.51667 -35.37826 -33.97415 -33.39298 -32.24651 -31.18930 -29.43051 -28.67883 -27.46703 -25.62519 -24.38879 -22.79721 -21.81242 -20.77998 -20.20393 -19.58879 -18.84120 -17.29703 -17.08222 -16.81359 -16.39950 -15.92577 -15.45056 -15.17556 -15.17101 -14.55545 -14.51161 -14.23178 -13.99686 -13.50368 -13.40580 -13.10335 -12.96953 -12.76497 -12.72594 -12.49097 -12.23867 -12.01418 -11.84889 -11.59186 -11.49212 -11.40566 -11.33705 -11.22264 -11.04243 -10.75231 -10.47643 -10.27792 -10.10181 -9.92386 -9.77459 -9.68911 -9.35233 -9.25768 -8.74600 -8.58480 -6.24635 -4.33121 0.67352 1.52723 2.12945 2.77031 3.06412 3.14809 3.24048 3.26782 3.70200 3.99491 4.10116 4.23904 4.27137 4.37269 4.54491 4.61529 4.68925 4.73106 4.83926 4.95953 5.01328 5.03156 5.26532 5.30928 5.35025 5.41737 5.48860 5.53206 5.56417 5.61791 5.70705 5.75603 5.85236 5.93542 6.06806 6.26047 6.34117 6.38228 6.54773 6.67162 6.76926 6.86453 6.97771 7.50464 8.04321 8.28320 8.80567 9.35943 10.86732 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.004004 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.609046 B = 6991.281470 C = 7851.100065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.212 3.788 3 N -0.539 5.539 4 C 0.271 3.729 5 N -0.368 5.368 6 N -0.309 5.309 7 C 0.107 3.893 8 C 0.142 3.858 9 H 0.100 0.900 10 N -1.121 6.121 11 S 2.607 3.393 12 O -0.934 6.934 13 O -0.960 6.960 14 C -0.575 4.575 15 C 0.000 4.000 16 C -0.512 4.512 17 H 0.087 0.913 18 C 0.090 3.910 19 N -0.880 5.880 20 Si 0.873 3.127 21 H -0.274 1.274 22 H -0.290 1.290 23 H -0.257 1.257 24 C -0.176 4.176 25 C -0.184 4.184 26 C -0.135 4.135 27 C -0.040 4.040 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 11.258 15.289 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 N -0.268 5.268 4 C -0.005 4.005 5 N -0.159 5.159 6 N -0.138 5.138 7 C -0.017 4.017 8 C 0.032 3.968 9 H 0.118 0.882 10 N -0.876 5.876 11 S 2.703 3.297 12 O -0.924 6.924 13 O -0.951 6.951 14 C -0.707 4.707 15 C -0.002 4.002 16 C -0.549 4.549 17 H 0.105 0.895 18 C -0.116 4.116 19 N -0.515 5.515 20 Si 0.700 3.300 21 H -0.200 1.200 22 H -0.216 1.216 23 H -0.182 1.182 24 C -0.214 4.214 25 C -0.222 4.222 26 C -0.174 4.174 27 C -0.080 4.080 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.249 0.751 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.128 0.872 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.620 9.750 14.924 18.416 hybrid contribution 0.258 1.611 -0.231 1.648 sum -4.362 11.361 14.693 19.079 Atomic orbital electron populations 1.20062 0.83918 1.03789 1.03732 1.24420 0.98247 0.85532 0.98775 1.70139 0.99784 1.30913 1.25917 1.24273 0.95083 0.84075 0.97083 1.50109 1.05750 1.05750 1.54289 1.77987 0.86515 1.22502 1.26806 1.22565 0.78649 0.95331 1.05127 1.20916 0.83025 0.91300 1.01550 0.88156 1.56157 1.31537 1.71441 1.28495 1.05288 0.74280 0.76023 0.74096 1.93605 1.56189 1.62933 1.79647 1.93541 1.49844 1.75449 1.76251 1.30299 1.10505 1.15891 1.14007 1.18841 0.87645 0.98798 0.94954 1.20336 1.30841 0.93725 1.10023 0.89499 1.24952 0.94009 0.97471 0.95123 1.69883 1.33195 1.34083 1.14295 0.86950 0.77462 0.86221 0.79386 1.19978 1.21642 1.18187 1.23035 0.98403 1.00350 0.99575 1.22992 1.06132 0.94317 0.98801 1.22123 0.99164 0.95230 1.00923 1.20377 0.86488 0.95865 1.05305 0.89872 0.90095 0.89725 0.86425 0.88696 0.75080 0.85675 0.87132 0.92184 0.89965 0.88564 0.88852 0.90599 0.89937 0.88172 0.87225 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 36.01 0.38 -0.15 16 2 C 0.21 2.98 8.15 -156.43 -1.27 1.71 16 3 N -0.54 -7.68 11.18 -8.03 -0.09 -7.77 16 4 C 0.27 3.46 7.72 -155.79 -1.20 2.25 16 5 N -0.37 -5.20 4.04 -58.29 -0.24 -5.44 16 6 N -0.31 -4.88 12.74 32.51 0.41 -4.46 16 7 C 0.11 1.35 6.90 -3.99 -0.03 1.33 16 8 C 0.14 1.52 2.58 -67.69 -0.17 1.35 16 9 H 0.10 1.15 7.27 -51.94 -0.38 0.77 16 10 N -1.12 -12.61 5.36 -4.69 -0.03 -12.63 16 11 S 2.61 45.23 5.12 -107.50 -0.55 44.68 16 12 O -0.93 -20.25 17.02 -57.54 -0.98 -21.23 16 13 O -0.96 -18.50 18.08 -57.54 -1.04 -19.54 16 14 C -0.58 -10.06 5.38 37.16 0.20 -9.86 16 15 C 0.00 0.01 0.79 -155.66 -0.12 -0.11 16 16 C -0.51 -13.78 8.78 -34.44 -0.30 -14.08 16 17 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 18 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 19 N -0.88 -26.16 13.96 55.43 0.77 -25.39 16 20 Si 0.87 20.29 24.96 -169.99 -4.24 16.05 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -5.35 5.68 56.52 0.32 -5.03 16 24 C -0.18 -3.43 9.96 -26.70 -0.27 -3.69 16 25 C -0.18 -3.59 7.67 -26.70 -0.20 -3.79 16 26 C -0.14 -0.95 5.49 -26.41 -0.15 -1.10 16 27 C -0.04 -0.32 6.33 -27.53 -0.17 -0.50 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.12 1.76 7.67 -51.93 -0.40 1.37 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.42 3.44 8.80 -34.47 -0.30 3.14 16 34 H 0.13 2.15 6.03 -51.92 -0.31 1.83 16 35 H 0.11 1.47 8.09 -51.93 -0.42 1.05 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 39 H 0.09 1.93 7.34 -51.93 -0.38 1.55 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -37.04 369.19 -10.31 -47.34 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.48 Total: 7.09 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -3.41 Total: -24.27 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.84 Total: -55.69 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -2.02 Total: -40.77 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.24 Total: 16.05 kcal Atomic # 16 Polarization: 45.23 SS G_CDS: -0.55 Total: 44.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.04 -10.31 -47.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474928358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.863 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds