Wall clock time and date at job start Sat Apr 11 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47257 * 2 1 4 4 N 1.29951 * 126.28922 * 90.01766 * 3 2 1 5 5 O 1.21300 * 110.24836 * 180.02562 * 4 3 2 6 6 C 1.33637 * 109.81276 * 0.02562 * 5 4 3 7 7 C 1.50710 * 126.54770 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.46867 * 270.02309 * 7 6 5 9 9 C 1.48562 * 110.99877 * 290.12646 * 8 7 6 10 10 C 1.54384 * 104.59069 * 200.96313 * 9 8 7 11 11 C 1.54259 * 105.06044 * 23.85401 * 10 9 8 12 12 H 1.09002 * 110.32245 * 119.00291 * 11 10 9 13 13 N 1.46506 * 110.32188 * 241.10169 * 11 10 9 14 14 C 1.34774 * 119.99877 * 273.54775 * 13 11 10 15 15 O 1.21276 * 120.00440 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99740 * 180.02562 * 14 13 11 17 17 S 1.80998 * 109.47238 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00018 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.38792 * 119.99685 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00692 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99842 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47235 * 90.00047 * 22 20 18 24 24 H 1.48499 * 109.47157 * 209.99876 * 22 20 18 25 25 H 1.48496 * 109.46872 * 330.00016 * 22 20 18 26 26 C 1.48565 * 110.99521 * 174.71120 * 8 7 6 27 27 N 1.31122 * 106.90076 * 0.22392 * 6 5 4 28 28 H 1.08995 * 109.47458 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47381 * 300.00093 * 1 2 3 30 30 H 1.09003 * 109.47220 * 59.99977 * 1 2 3 31 31 H 1.09000 * 109.47381 * 239.99907 * 2 1 3 32 32 H 1.09003 * 109.46969 * 119.99533 * 2 1 3 33 33 H 1.09004 * 109.46962 * 150.02656 * 7 6 5 34 34 H 1.08996 * 109.47059 * 30.02520 * 7 6 5 35 35 H 1.08996 * 110.40708 * 82.18775 * 9 8 7 36 36 H 1.09002 * 110.41005 * 319.73943 * 9 8 7 37 37 H 1.09006 * 110.32388 * 264.95641 * 10 9 8 38 38 H 1.08997 * 110.32193 * 142.75066 * 10 9 8 39 39 H 0.96996 * 119.99556 * 93.55117 * 13 11 10 40 40 H 1.09001 * 109.47040 * 300.00228 * 16 14 13 41 41 H 1.08998 * 109.47387 * 59.99745 * 16 14 13 42 42 H 0.96997 * 120.00353 * 179.97438 * 21 20 18 43 43 H 1.08995 * 110.41514 * 40.25650 * 26 8 7 44 44 H 1.08998 * 110.40856 * 277.81831 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2890 2.1458 1.0475 5 8 2.6771 3.2451 0.7123 6 6 2.7051 3.3285 -0.6212 7 6 3.1259 4.5237 -1.4371 8 7 1.9566 5.3731 -1.7003 9 6 1.0212 4.7127 -2.6468 10 6 0.1805 5.8677 -3.2322 11 6 1.0572 7.1260 -3.0657 12 1 1.2782 7.5649 -4.0386 13 7 0.3846 8.1049 -2.2079 14 6 -0.4845 8.9851 -2.7430 15 8 -0.7102 8.9666 -3.9344 16 6 -1.1760 9.9924 -1.8606 17 16 -2.2720 11.0236 -2.8663 18 6 -2.9308 12.0780 -1.6178 19 1 -2.6189 11.9590 -0.5907 20 6 -3.8497 13.0622 -1.9545 21 7 -4.2287 13.2083 -3.2066 22 14 -4.5476 14.1806 -0.6310 23 1 -3.6855 15.3819 -0.4927 24 1 -5.9214 14.5982 -1.0096 25 1 -4.5906 13.4508 0.6616 26 6 2.3538 6.6255 -2.3937 27 7 2.2913 2.1735 -1.0841 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.5505 4.1868 -2.3828 34 1 3.8732 5.0947 -0.8862 35 1 0.3810 4.0066 -2.1181 36 1 1.5749 4.2068 -3.4377 37 1 -0.7503 5.9784 -2.6758 38 1 -0.0272 5.6879 -4.2870 39 1 0.5648 8.1194 -1.2549 40 1 -1.7618 9.4708 -1.1037 41 1 -0.4306 10.6211 -1.3736 42 1 -4.8711 13.8959 -3.4418 43 1 3.1160 6.4189 -3.1449 44 1 2.7169 7.3595 -1.6744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479945442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:28 Heat of formation + Delta-G solvation = 8.471468 kcal Electronic energy + Delta-G solvation = -26198.463889 eV Core-core repulsion = 22279.248414 eV Total energy + Delta-G solvation = -3919.215475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.63703 -41.05986 -39.55146 -37.38187 -35.94080 -34.60792 -34.55499 -33.02960 -31.88947 -30.74778 -29.18967 -27.70144 -27.25392 -26.08729 -24.18037 -22.81316 -22.38783 -21.67511 -21.32198 -19.83611 -19.19715 -18.48393 -17.94919 -17.53124 -16.90165 -16.86759 -16.73043 -16.26341 -16.03193 -15.76906 -15.26714 -15.21739 -14.84028 -14.60610 -14.34705 -14.06973 -13.94266 -13.74939 -13.40264 -13.15548 -13.14629 -12.96080 -12.88119 -12.77096 -12.65650 -12.59554 -12.41369 -12.30905 -12.18020 -11.98517 -11.91235 -11.71238 -11.13542 -11.02833 -10.89643 -10.26212 -10.12840 -9.64451 -8.64909 -8.33946 -6.11446 0.08220 1.13522 1.28446 1.42693 1.47991 1.58625 1.65171 1.79631 2.27152 2.34248 2.57206 2.91185 3.00052 3.05980 3.33362 3.46905 3.66126 3.86846 4.02581 4.12632 4.16587 4.18438 4.22424 4.27567 4.30940 4.33479 4.45171 4.54110 4.54632 4.66922 4.73975 4.77103 4.85204 4.86606 4.92272 4.99211 5.01560 5.13143 5.20621 5.42770 5.47009 5.69832 5.72885 6.20679 6.56613 7.07514 7.13282 7.29941 8.75134 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.001879 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.834541 B =14895.183814 C =15436.257572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 C 0.164 3.836 4 N -0.409 5.409 5 O 0.075 5.925 6 C 0.199 3.801 7 C 0.134 3.866 8 N -0.518 5.518 9 C 0.046 3.954 10 C -0.135 4.135 11 C 0.140 3.860 12 H 0.087 0.913 13 N -0.703 5.703 14 C 0.536 3.464 15 O -0.564 6.564 16 C -0.131 4.131 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.259 1.259 26 C 0.042 3.958 27 N -0.494 5.494 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.146 0.854 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.416 0.584 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.095 0.905 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.351 -24.928 6.710 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.109 4.109 4 N -0.119 5.119 5 O 0.018 5.982 6 C -0.023 4.023 7 C 0.005 3.995 8 N -0.245 5.245 9 C -0.082 4.082 10 C -0.174 4.174 11 C 0.034 3.966 12 H 0.105 0.895 13 N -0.356 5.356 14 C 0.322 3.678 15 O -0.442 6.442 16 C -0.282 4.282 17 S 0.077 5.923 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.183 1.183 26 C -0.085 4.085 27 N -0.229 5.229 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.164 0.836 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.253 0.747 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.462 -25.375 5.661 31.887 hybrid contribution -0.208 0.741 1.429 1.623 sum 18.254 -24.634 7.090 31.469 Atomic orbital electron populations 1.21708 0.92915 1.03955 1.01587 1.20116 0.97018 0.84249 1.05815 1.26468 0.99733 1.01450 0.83235 1.74647 1.18898 0.93467 1.24886 1.85267 1.60608 1.26831 1.25458 1.29117 0.94480 0.96737 0.81921 1.20950 0.93489 0.86775 0.98272 1.65373 1.12628 1.04675 1.41778 1.23043 0.95106 0.95689 0.94320 1.22736 0.98818 0.94411 1.01478 1.21735 0.92112 0.88056 0.94660 0.89516 1.45843 1.43852 1.33441 1.12509 1.19995 0.78956 0.81069 0.87778 1.90686 1.63712 1.72390 1.17450 1.23382 1.02513 0.99990 1.02302 1.85529 1.52486 1.39008 1.15257 1.23204 1.30278 1.20259 0.95663 0.90011 1.26117 0.95872 0.98517 0.98687 1.70178 1.31872 1.33550 1.19119 0.84966 0.77404 0.77902 0.77785 1.19212 1.20342 1.18325 1.23413 0.94986 0.91453 0.98686 1.71907 1.18385 1.02799 1.29766 0.88776 0.93561 0.93033 0.87269 0.88009 0.87391 0.83641 0.91847 0.91323 0.92524 0.90621 0.74657 0.87759 0.87122 0.92013 0.88735 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.94 16 2 C -0.03 -0.40 6.56 29.85 0.20 -0.20 16 3 C 0.16 3.07 7.47 138.46 1.03 4.10 16 4 N -0.41 -8.85 12.16 -60.32 -0.73 -9.58 16 5 O 0.07 1.45 11.31 74.89 0.85 2.30 16 6 C 0.20 3.07 7.51 88.39 0.66 3.74 16 7 C 0.13 1.07 5.44 85.56 0.47 1.54 16 8 N -0.52 -6.22 5.36 -886.01 -4.75 -10.97 16 9 C 0.05 0.71 5.98 86.45 0.52 1.23 16 10 C -0.14 -2.73 6.78 31.49 0.21 -2.51 16 11 C 0.14 2.67 3.36 45.88 0.15 2.82 16 12 H 0.09 1.95 7.64 -2.39 -0.02 1.93 16 13 N -0.70 -16.47 5.00 -438.29 -2.19 -18.66 16 14 C 0.54 19.03 7.84 87.66 0.69 19.72 16 15 O -0.56 -25.20 15.56 -3.02 -0.05 -25.25 16 16 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 17 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 18 C -0.55 -31.23 9.50 67.95 0.65 -30.59 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 22 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 C 0.04 0.41 6.09 86.45 0.53 0.94 16 27 N -0.49 -9.05 11.55 -303.20 -3.50 -12.55 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.50 7.88 -2.38 -0.02 0.48 16 34 H 0.15 0.34 8.13 -2.39 -0.02 0.32 16 35 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.07 0.88 7.82 -2.39 -0.02 0.86 16 37 H 0.06 1.42 7.95 -2.38 -0.02 1.40 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.42 7.45 8.56 -92.71 -0.79 6.66 16 40 H 0.10 3.77 8.14 -2.40 -0.02 3.75 16 41 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.09 0.50 8.00 -2.39 -0.02 0.48 16 44 H 0.11 0.84 7.99 -2.39 -0.02 0.82 16 Total: -1.00 -81.00 387.02 -2.28 -83.27 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.23 Total: 14.51 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.72 Total: -3.64 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -10.89 Total: -107.47 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.80 Total: -22.95 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -81.00 -2.28 -83.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479945442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.745 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds