Wall clock time and date at job start Sat Apr 11 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 C 1.52991 * 109.47369 * 119.99942 * 2 1 3 5 5 H 1.09003 * 109.46931 * 295.31109 * 4 2 1 6 6 C 1.53002 * 109.47370 * 175.30904 * 4 2 1 7 7 N 1.46496 * 109.47263 * 185.00121 * 6 4 2 8 8 C 1.34775 * 119.99954 * 180.02562 * 7 6 4 9 9 O 1.21631 * 120.00550 * 359.97438 * 8 7 6 10 10 C 1.47271 * 120.00221 * 179.97438 * 8 7 6 11 11 C 1.35199 * 123.14629 * 179.97438 * 10 8 7 12 12 S 1.70940 * 108.83065 * 179.97438 * 11 10 8 13 13 C 1.70766 * 91.12800 * 0.02562 * 12 11 10 14 14 N 1.28656 * 110.56137 * 359.76497 * 13 12 11 15 15 N 1.46903 * 109.47080 * 55.30843 * 4 2 1 16 16 C 1.46904 * 110.99874 * 64.90626 * 15 4 2 17 17 C 1.50700 * 109.47024 * 185.47583 * 16 15 4 18 18 O 1.21292 * 119.99903 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99744 * 179.72249 * 17 16 15 20 20 C 1.37098 * 119.99690 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99811 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99862 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00061 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47335 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47357 * 120.00262 * 24 22 20 27 27 H 1.48510 * 109.47012 * 240.00177 * 24 22 20 28 28 H 1.09001 * 109.47206 * 294.50254 * 1 2 3 29 29 H 1.08998 * 109.47125 * 54.50494 * 1 2 3 30 30 H 1.09001 * 109.46959 * 174.50176 * 1 2 3 31 31 H 1.09007 * 109.47084 * 240.00480 * 2 1 3 32 32 H 1.08995 * 109.47391 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46946 * 299.99944 * 3 2 1 34 34 H 1.09001 * 109.46885 * 59.99878 * 3 2 1 35 35 H 1.08998 * 109.47134 * 305.00059 * 6 4 2 36 36 H 1.09003 * 109.47102 * 64.99963 * 6 4 2 37 37 H 0.96999 * 119.99966 * 359.97438 * 7 6 4 38 38 H 1.08010 * 125.58325 * 359.96307 * 11 10 8 39 39 H 1.08003 * 124.72236 * 179.97438 * 13 12 11 40 40 H 1.00897 * 111.00270 * 188.85269 * 15 4 2 41 41 H 1.09000 * 109.47351 * 65.46953 * 16 15 4 42 42 H 1.09008 * 109.46665 * 305.47264 * 16 15 4 43 43 H 0.97003 * 119.99951 * 359.97438 * 19 17 16 44 44 H 0.96999 * 120.00535 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7469 -0.1611 2.1372 6 6 3.5655 -0.8242 1.1916 7 7 4.0446 -1.6178 2.3259 8 6 5.3643 -1.8422 2.4818 9 8 6.1577 -1.3862 1.6805 10 6 5.8460 -2.6395 3.6225 11 6 7.1540 -2.9039 3.8397 12 16 7.2977 -3.8508 5.2557 13 6 5.6043 -3.8398 5.4755 14 7 5.0318 -3.1652 4.5414 15 7 1.4601 -2.0696 1.3072 16 6 1.9282 -2.8928 0.1841 17 6 1.2121 -4.2187 0.2003 18 8 0.3927 -4.4548 1.0629 19 7 1.4784 -5.1400 -0.7467 20 6 0.8273 -6.3464 -0.7316 21 1 0.1013 -6.5586 0.0393 22 6 1.1014 -7.2961 -1.7081 23 7 1.9852 -7.0381 -2.6458 24 14 0.2138 -8.9395 -1.6880 25 1 -0.7241 -8.9816 -0.5375 26 1 -0.5459 -9.1074 -2.9530 27 1 1.2062 -10.0366 -1.5574 28 1 -0.3634 0.4262 0.9351 29 1 -0.3633 0.5967 -0.8367 30 1 -0.3633 -1.0230 -0.0985 31 1 1.8934 -0.5138 -0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.8622 -1.3060 0.2600 36 1 3.9991 0.1748 1.2381 37 1 3.4120 -1.9812 2.9652 38 1 7.9738 -2.5714 3.2200 39 1 5.0862 -4.3281 6.2876 40 1 1.6639 -2.5133 2.1901 41 1 3.0015 -3.0583 0.2775 42 1 1.7201 -2.3789 -0.7545 43 1 2.1308 -4.9495 -1.4388 44 1 2.1764 -7.7008 -3.3278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482522330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:18 Heat of formation + Delta-G solvation = -29.838990 kcal Electronic energy + Delta-G solvation = -27425.263282 eV Core-core repulsion = 23504.386540 eV Total energy + Delta-G solvation = -3920.876741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71160 -39.34916 -38.35213 -37.45696 -34.41938 -33.97016 -32.89053 -31.17115 -30.95737 -28.91801 -27.21946 -26.55354 -25.59824 -24.25510 -23.27828 -21.86719 -20.30385 -19.74007 -19.16519 -18.70311 -17.81899 -16.95789 -16.65937 -16.25755 -15.68829 -15.45417 -15.30288 -14.78177 -14.55703 -14.30275 -14.25475 -13.93024 -13.67448 -13.65834 -13.45483 -13.28184 -12.82436 -12.38829 -12.25812 -12.20153 -12.00254 -11.64787 -11.55141 -11.43174 -11.06604 -10.88603 -10.78485 -10.41075 -10.32519 -10.27949 -10.19261 -10.15881 -10.03253 -9.48419 -9.40944 -9.10912 -8.46661 -8.03281 -7.92269 -6.38376 -3.79079 0.24729 0.95118 1.30282 1.74972 3.04016 3.18021 3.21175 3.28221 3.35554 3.84466 3.95258 4.11798 4.33843 4.62670 4.67890 4.81054 4.92521 5.01735 5.04256 5.21344 5.22483 5.28138 5.34679 5.49853 5.59398 5.69168 5.71783 5.80852 5.89059 5.94248 6.01772 6.04149 6.14381 6.28406 6.30761 6.41249 6.64635 7.03166 7.17283 7.39998 7.58236 7.59274 8.03047 8.09859 8.65076 9.21504 9.58424 10.10089 10.79526 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007295 B = 0.003642 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3837.195236 B = 7685.881942 C =10530.595976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.082 3.918 5 H 0.089 0.911 6 C 0.078 3.922 7 N -0.709 5.709 8 C 0.596 3.404 9 O -0.535 6.535 10 C 0.005 3.995 11 C -0.222 4.222 12 S 0.210 5.790 13 C 0.002 3.998 14 N -0.439 5.439 15 N -0.652 5.652 16 C 0.044 3.956 17 C 0.443 3.557 18 O -0.581 6.581 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.408 0.592 38 H 0.190 0.810 39 H 0.207 0.793 40 H 0.346 0.654 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.391 0.609 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 12.719 13.168 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.029 4.029 5 H 0.107 0.893 6 C -0.047 4.047 7 N -0.361 5.361 8 C 0.379 3.621 9 O -0.412 6.412 10 C -0.130 4.130 11 C -0.365 4.365 12 S 0.465 5.535 13 C -0.298 4.298 14 N -0.154 5.154 15 N -0.283 5.283 16 C -0.088 4.088 17 C 0.229 3.771 18 O -0.465 6.465 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.245 0.755 38 H 0.207 0.793 39 H 0.224 0.776 40 H 0.166 0.834 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.224 0.776 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.811 12.561 13.254 20.730 hybrid contribution 0.383 -0.695 -0.715 1.068 sum 10.194 11.866 12.540 20.050 Atomic orbital electron populations 1.21659 0.93738 1.03133 1.00652 1.21091 0.97328 0.95167 0.96914 1.21916 1.00908 0.96009 1.01933 1.21987 0.89115 0.91827 0.99967 0.89255 1.22334 0.96899 0.96134 0.89347 1.45772 1.07208 1.53996 1.29147 1.17022 0.82587 0.79248 0.83249 1.90818 1.55186 1.51422 1.43797 1.20489 0.89451 1.04668 0.98363 1.26641 1.01683 1.04649 1.03509 1.82941 1.08783 1.44204 1.17602 1.28502 0.95769 1.02970 1.02538 1.66958 1.36767 1.09392 1.02252 1.60207 1.60954 1.01376 1.05738 1.21769 0.97096 0.94196 0.95772 1.19798 0.86822 0.85651 0.84859 1.90520 1.37124 1.79873 1.38978 1.41870 1.38298 1.14156 1.25891 1.19740 1.20328 0.90645 1.11985 0.87914 1.25250 0.97149 0.99980 0.95598 1.69624 1.33395 1.36193 1.15137 0.85820 0.79070 0.81285 0.78287 1.19231 1.20747 1.20833 0.93049 0.93617 0.90866 0.90885 0.92649 0.92422 0.92627 0.90668 0.90700 0.75503 0.79300 0.77646 0.83430 0.93709 0.89331 0.77566 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.89 37.16 0.33 -1.31 16 2 C -0.09 -0.97 2.13 -90.62 -0.19 -1.16 16 3 C -0.15 -1.39 8.94 37.16 0.33 -1.05 16 4 C 0.08 0.98 2.29 -67.71 -0.16 0.82 16 5 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 6 C 0.08 0.97 4.11 -4.04 -0.02 0.95 16 7 N -0.71 -9.31 5.33 -61.43 -0.33 -9.63 16 8 C 0.60 8.75 7.80 -12.59 -0.10 8.66 16 9 O -0.54 -9.13 16.71 5.25 0.09 -9.04 16 10 C 0.01 0.07 6.70 -84.52 -0.57 -0.50 16 11 C -0.22 -2.31 10.62 29.65 0.31 -1.99 16 12 S 0.21 1.48 22.97 -107.50 -2.47 -0.99 16 13 C 0.00 0.02 12.17 51.43 0.63 0.64 16 14 N -0.44 -5.26 10.12 -12.36 -0.13 -5.39 16 15 N -0.65 -10.02 5.01 -107.99 -0.54 -10.56 16 16 C 0.04 0.79 5.27 -4.97 -0.03 0.76 16 17 C 0.44 10.57 7.83 -10.98 -0.09 10.48 16 18 O -0.58 -15.78 15.90 5.55 0.09 -15.69 16 19 N -0.57 -14.61 5.29 -10.96 -0.06 -14.66 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 31 H 0.07 0.89 6.64 -51.92 -0.34 0.54 16 32 H 0.05 0.50 6.67 -51.93 -0.35 0.15 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 1.04 6.76 -51.93 -0.35 0.69 16 36 H 0.07 0.87 6.81 -51.93 -0.35 0.52 16 37 H 0.41 5.16 6.74 -40.82 -0.28 4.88 16 38 H 0.19 1.78 8.03 -52.48 -0.42 1.36 16 39 H 0.21 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.35 5.49 7.34 -39.29 -0.29 5.21 16 41 H 0.04 0.78 6.64 -51.93 -0.34 0.44 16 42 H 0.09 1.48 6.29 -51.92 -0.33 1.15 16 43 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 378.91 15.07 5.71 5.71 Total: -1.00 -34.05 378.91 -7.53 -41.58 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -5.82 Total: 18.41 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 0.22 Total: 8.22 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: -0.33 Total: -64.51 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.18 Total: -24.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.47 Total: -0.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.05 -7.53 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482522330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.745 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds