Wall clock time and date at job start Sat Apr 11 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 C 1.52991 * 109.47369 * 119.99942 * 2 1 3 5 5 H 1.09003 * 109.46931 * 295.31109 * 4 2 1 6 6 C 1.53002 * 109.47370 * 175.30904 * 4 2 1 7 7 N 1.46496 * 109.47263 * 185.00121 * 6 4 2 8 8 C 1.34775 * 119.99954 * 180.02562 * 7 6 4 9 9 O 1.21631 * 120.00550 * 359.97438 * 8 7 6 10 10 C 1.47271 * 120.00221 * 179.97438 * 8 7 6 11 11 C 1.35199 * 123.14629 * 179.97438 * 10 8 7 12 12 S 1.70940 * 108.83065 * 179.97438 * 11 10 8 13 13 C 1.70766 * 91.12800 * 0.02562 * 12 11 10 14 14 N 1.28656 * 110.56137 * 359.76497 * 13 12 11 15 15 N 1.46903 * 109.47080 * 55.30843 * 4 2 1 16 16 C 1.46904 * 110.99874 * 64.90626 * 15 4 2 17 17 C 1.50700 * 109.47024 * 185.47583 * 16 15 4 18 18 O 1.21292 * 119.99903 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99744 * 179.72249 * 17 16 15 20 20 C 1.37098 * 119.99690 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99811 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99862 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00061 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47335 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47357 * 120.00262 * 24 22 20 27 27 H 1.48510 * 109.47012 * 240.00177 * 24 22 20 28 28 H 1.09001 * 109.47206 * 294.50254 * 1 2 3 29 29 H 1.08998 * 109.47125 * 54.50494 * 1 2 3 30 30 H 1.09001 * 109.46959 * 174.50176 * 1 2 3 31 31 H 1.09007 * 109.47084 * 240.00480 * 2 1 3 32 32 H 1.08995 * 109.47391 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46946 * 299.99944 * 3 2 1 34 34 H 1.09001 * 109.46885 * 59.99878 * 3 2 1 35 35 H 1.08998 * 109.47134 * 305.00059 * 6 4 2 36 36 H 1.09003 * 109.47102 * 64.99963 * 6 4 2 37 37 H 0.96999 * 119.99966 * 359.97438 * 7 6 4 38 38 H 1.08010 * 125.58325 * 359.96307 * 11 10 8 39 39 H 1.08003 * 124.72236 * 179.97438 * 13 12 11 40 40 H 1.00897 * 111.00270 * 188.85269 * 15 4 2 41 41 H 1.09000 * 109.47351 * 65.46953 * 16 15 4 42 42 H 1.09008 * 109.46665 * 305.47264 * 16 15 4 43 43 H 0.97003 * 119.99951 * 359.97438 * 19 17 16 44 44 H 0.96999 * 120.00535 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7469 -0.1611 2.1372 6 6 3.5655 -0.8242 1.1916 7 7 4.0446 -1.6178 2.3259 8 6 5.3643 -1.8422 2.4818 9 8 6.1577 -1.3862 1.6805 10 6 5.8460 -2.6395 3.6225 11 6 7.1540 -2.9039 3.8397 12 16 7.2977 -3.8508 5.2557 13 6 5.6043 -3.8398 5.4755 14 7 5.0318 -3.1652 4.5414 15 7 1.4601 -2.0696 1.3072 16 6 1.9282 -2.8928 0.1841 17 6 1.2121 -4.2187 0.2003 18 8 0.3927 -4.4548 1.0629 19 7 1.4784 -5.1400 -0.7467 20 6 0.8273 -6.3464 -0.7316 21 1 0.1013 -6.5586 0.0393 22 6 1.1014 -7.2961 -1.7081 23 7 1.9852 -7.0381 -2.6458 24 14 0.2138 -8.9395 -1.6880 25 1 -0.7241 -8.9816 -0.5375 26 1 -0.5459 -9.1074 -2.9530 27 1 1.2062 -10.0366 -1.5574 28 1 -0.3634 0.4262 0.9351 29 1 -0.3633 0.5967 -0.8367 30 1 -0.3633 -1.0230 -0.0985 31 1 1.8934 -0.5138 -0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.8622 -1.3060 0.2600 36 1 3.9991 0.1748 1.2381 37 1 3.4120 -1.9812 2.9652 38 1 7.9738 -2.5714 3.2200 39 1 5.0862 -4.3281 6.2876 40 1 1.6639 -2.5133 2.1901 41 1 3.0015 -3.0583 0.2775 42 1 1.7201 -2.3789 -0.7545 43 1 2.1308 -4.9495 -1.4388 44 1 2.1764 -7.7008 -3.3278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482522330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:17 Heat of formation + Delta-G solvation = -57.008461 kcal Electronic energy + Delta-G solvation = -27426.441438 eV Core-core repulsion = 23504.386540 eV Total energy + Delta-G solvation = -3922.054898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65792 -40.55266 -39.75228 -38.85642 -35.99378 -35.45153 -34.18566 -33.24459 -31.76491 -30.06350 -28.51391 -27.55519 -26.71502 -25.91494 -24.24843 -22.85444 -21.64806 -20.93347 -20.28139 -19.93684 -19.64017 -18.23736 -17.82305 -17.26798 -16.95183 -16.79151 -16.37561 -16.29858 -15.93177 -15.79012 -15.39115 -15.19299 -15.11634 -14.68628 -14.47974 -14.34178 -13.97443 -13.95657 -13.54432 -13.31523 -13.09687 -12.98491 -12.87162 -12.79598 -12.60712 -12.40887 -12.12049 -11.87887 -11.75747 -11.52224 -11.41371 -11.30998 -10.89624 -10.76375 -10.38131 -10.33067 -10.02284 -9.94413 -9.39829 -8.47300 -5.96391 -0.50925 0.29826 0.60563 0.87747 1.35523 1.40347 1.55092 2.02868 2.05796 2.22852 2.28224 2.88473 3.08994 3.19366 3.46570 3.62582 3.86484 3.97016 4.10509 4.12298 4.19193 4.30184 4.32242 4.37607 4.44994 4.52971 4.59206 4.78661 4.83663 4.87638 4.92308 5.09563 5.14713 5.19102 5.34381 5.39875 5.50123 5.60243 5.83812 6.05463 6.15386 6.32049 6.49574 6.58379 6.97402 7.11591 7.54559 8.09683 8.70547 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007295 B = 0.003642 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3837.195236 B = 7685.881942 C =10530.595976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C -0.144 4.144 4 C 0.091 3.909 5 H 0.109 0.891 6 C 0.083 3.917 7 N -0.705 5.705 8 C 0.588 3.412 9 O -0.570 6.570 10 C -0.027 4.027 11 C -0.239 4.239 12 S 0.302 5.698 13 C -0.009 4.009 14 N -0.473 5.473 15 N -0.657 5.657 16 C 0.066 3.934 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.411 0.589 38 H 0.192 0.808 39 H 0.238 0.762 40 H 0.343 0.657 41 H 0.050 0.950 42 H 0.103 0.897 43 H 0.393 0.607 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 12.843 14.216 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.104 4.104 3 C -0.201 4.201 4 C -0.019 4.019 5 H 0.127 0.873 6 C -0.042 4.042 7 N -0.356 5.356 8 C 0.373 3.627 9 O -0.450 6.450 10 C -0.162 4.162 11 C -0.383 4.383 12 S 0.558 5.442 13 C -0.308 4.308 14 N -0.188 5.188 15 N -0.288 5.288 16 C -0.067 4.067 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.564 5.564 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.209 0.791 39 H 0.254 0.746 40 H 0.162 0.838 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.227 0.773 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.520 12.700 14.312 21.836 hybrid contribution 0.226 -0.735 -0.940 1.215 sum 10.746 11.965 13.372 20.915 Atomic orbital electron populations 1.21597 0.94272 1.01215 1.01632 1.21097 0.96740 0.96589 0.95983 1.21859 1.01055 0.94258 1.02946 1.22059 0.88647 0.89899 1.01288 0.87348 1.22300 0.96955 0.96429 0.88500 1.45786 1.07007 1.53707 1.29130 1.17421 0.82637 0.79065 0.83570 1.90777 1.55908 1.53055 1.45224 1.20364 0.90531 1.06397 0.98899 1.26940 1.01092 1.04971 1.05264 1.82606 1.06354 1.41130 1.14126 1.29106 0.97481 1.01876 1.02302 1.66946 1.37727 1.10912 1.03183 1.60202 1.61544 1.02392 1.04682 1.21509 0.96302 0.91366 0.97515 1.20788 0.86053 0.86970 0.83366 1.90486 1.38691 1.80954 1.40075 1.41952 1.38520 1.14186 1.26603 1.19712 1.21386 0.92443 1.12585 0.90196 1.26061 0.97553 1.03011 0.94715 1.69692 1.33878 1.37427 1.15374 0.84863 0.78041 0.77011 0.78373 1.19619 1.19554 1.19633 0.92271 0.92383 0.94221 0.91870 0.92343 0.91603 0.91471 0.92278 0.89529 0.75229 0.79058 0.74636 0.83798 0.93217 0.87939 0.77348 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.89 71.98 0.64 -2.41 16 2 C -0.08 -1.82 2.13 -10.80 -0.02 -1.84 16 3 C -0.14 -2.34 8.94 71.98 0.64 -1.70 16 4 C 0.09 2.09 2.29 44.91 0.10 2.19 16 5 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 6 C 0.08 2.03 4.11 86.38 0.35 2.38 16 7 N -0.71 -18.70 5.33 -466.52 -2.49 -21.19 16 8 C 0.59 17.71 7.80 86.62 0.68 18.38 16 9 O -0.57 -19.99 16.71 -4.13 -0.07 -20.06 16 10 C -0.03 -0.69 6.70 40.56 0.27 -0.42 16 11 C -0.24 -4.82 10.62 67.12 0.71 -4.11 16 12 S 0.30 3.53 22.97 -56.49 -1.30 2.23 16 13 C -0.01 -0.14 12.17 130.71 1.59 1.46 16 14 N -0.47 -11.11 10.12 -193.02 -1.95 -13.06 16 15 N -0.66 -20.27 5.01 -495.56 -2.48 -22.76 16 16 C 0.07 2.37 5.27 85.56 0.45 2.82 16 17 C 0.44 21.63 7.83 87.66 0.69 22.32 16 18 O -0.62 -34.51 15.90 -3.07 -0.05 -34.56 16 19 N -0.58 -30.63 5.29 -306.98 -1.62 -32.25 16 20 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 21 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.92 -51.14 13.05 21.66 0.28 -50.86 16 24 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.20 7.68 -2.39 -0.02 1.18 16 31 H 0.06 1.49 6.64 -2.38 -0.02 1.48 16 32 H 0.06 0.93 6.67 -2.39 -0.02 0.92 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.65 6.76 -2.39 -0.02 1.63 16 36 H 0.09 1.94 6.81 -2.39 -0.02 1.92 16 37 H 0.41 10.50 6.74 -92.71 -0.62 9.88 16 38 H 0.19 3.58 8.03 -2.91 -0.02 3.55 16 39 H 0.24 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.34 11.00 7.34 -89.70 -0.66 10.34 16 41 H 0.05 1.77 6.64 -2.39 -0.02 1.76 16 42 H 0.10 3.45 6.29 -2.38 -0.01 3.43 16 43 H 0.39 20.25 7.90 -92.71 -0.73 19.52 16 44 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -75.60 378.91 -1.21 -76.81 By element: Atomic # 1 Polarization: 50.61 SS G_CDS: -0.94 Total: 49.67 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 7.39 Total: 20.31 kcal Atomic # 7 Polarization: -131.86 SS G_CDS: -8.26 Total: -140.12 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -0.12 Total: -54.62 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.30 Total: 2.23 kcal Total: -75.60 -1.21 -76.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482522330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.803 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds