Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 C 1.52997 * 109.47210 * 120.00248 * 2 1 3 5 5 H 1.08999 * 109.47346 * 181.03279 * 4 2 1 6 6 C 1.53002 * 109.47054 * 301.02730 * 4 2 1 7 7 N 1.46499 * 109.47552 * 174.99982 * 6 4 2 8 8 C 1.34770 * 120.00403 * 179.97438 * 7 6 4 9 9 O 1.21636 * 119.99709 * 0.02562 * 8 7 6 10 10 C 1.47267 * 119.99892 * 180.02562 * 8 7 6 11 11 C 1.35213 * 123.13600 * 180.02562 * 10 8 7 12 12 S 1.70941 * 108.82254 * 179.97438 * 11 10 8 13 13 C 1.70766 * 91.13274 * 359.97438 * 12 11 10 14 14 N 1.28657 * 110.55730 * 359.76403 * 13 12 11 15 15 N 1.46897 * 109.47313 * 61.02595 * 4 2 1 16 16 C 1.46898 * 110.99866 * 86.40972 * 15 4 2 17 17 C 1.50699 * 109.47012 * 185.24353 * 16 15 4 18 18 O 1.21290 * 120.00372 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99729 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99688 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99885 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99764 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00023 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99764 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47068 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47362 * 120.00215 * 24 22 20 27 27 H 1.48509 * 109.46829 * 240.00068 * 24 22 20 28 28 H 1.09004 * 109.47308 * 299.99935 * 1 2 3 29 29 H 1.09002 * 109.47529 * 59.99907 * 1 2 3 30 30 H 1.08999 * 109.47556 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46816 * 240.00220 * 2 1 3 32 32 H 1.09005 * 109.46942 * 174.51620 * 3 2 1 33 33 H 1.09004 * 109.47287 * 294.51451 * 3 2 1 34 34 H 1.08994 * 109.47082 * 54.51551 * 3 2 1 35 35 H 1.09004 * 109.47140 * 54.99795 * 6 4 2 36 36 H 1.09008 * 109.47052 * 295.00015 * 6 4 2 37 37 H 0.97000 * 119.99315 * 0.02562 * 7 6 4 38 38 H 1.07998 * 125.59251 * 359.95739 * 11 10 8 39 39 H 1.07995 * 124.72620 * 179.97438 * 13 12 11 40 40 H 1.00901 * 111.00225 * 210.36495 * 15 4 2 41 41 H 1.08997 * 109.47362 * 305.24884 * 16 15 4 42 42 H 1.09004 * 109.46727 * 65.24933 * 16 15 4 43 43 H 0.96993 * 120.00477 * 0.02562 * 19 17 16 44 44 H 0.97003 * 120.00096 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1298 -0.7053 1.2585 6 6 1.5090 -0.0152 2.4983 7 7 1.8975 -0.7732 3.6902 8 6 1.5376 -0.3367 4.9135 9 8 0.8897 0.6864 5.0278 10 6 1.9287 -1.0985 6.1116 11 6 1.6018 -0.7196 7.3677 12 16 2.2363 -1.8609 8.4708 13 6 2.9004 -2.7779 7.1924 14 7 2.6338 -2.2315 6.0586 15 7 1.5707 -2.1132 1.2368 16 6 2.4914 -2.9725 0.4806 17 6 1.9146 -4.3610 0.3802 18 8 0.8418 -4.6103 0.8883 19 7 2.5908 -5.3260 -0.2741 20 6 2.0657 -6.5892 -0.3658 21 1 1.1101 -6.8108 0.0859 22 6 2.7631 -7.5841 -1.0399 23 7 3.9261 -7.3145 -1.5891 24 14 2.0474 -9.3050 -1.1655 25 1 0.7369 -9.3482 -0.4683 26 1 1.8600 -9.6601 -2.5952 27 1 2.9767 -10.2750 -0.5323 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 3.1256 1.4440 0.0982 33 1 1.7591 1.9272 -0.9350 34 1 1.5987 1.9839 0.8367 35 1 0.4220 0.0475 2.4459 36 1 1.9285 0.9894 2.5539 37 1 2.4145 -1.5888 3.5990 38 1 1.0333 0.1601 7.6310 39 1 3.4626 -3.6913 7.3179 40 1 1.4416 -2.4597 2.1757 41 1 2.6307 -2.5636 -0.5202 42 1 3.4526 -3.0145 0.9929 43 1 3.4489 -5.1269 -0.6801 44 1 4.4128 -8.0090 -2.0600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482522331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -29.368189 kcal Electronic energy + Delta-G solvation = -27033.851752 eV Core-core repulsion = 23112.995426 eV Total energy + Delta-G solvation = -3920.856326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73078 -39.25043 -38.35918 -37.52382 -34.34268 -34.04763 -33.14572 -31.18970 -30.99078 -28.88360 -27.10708 -26.57864 -25.57904 -24.09533 -23.38659 -22.40220 -20.14909 -19.42049 -19.19246 -18.81873 -17.88064 -17.11464 -16.38784 -16.11142 -15.91604 -15.46549 -15.31847 -14.99021 -14.49875 -14.37692 -14.17399 -13.83713 -13.74885 -13.70803 -13.57427 -13.27204 -12.97554 -12.38840 -12.28788 -12.11099 -11.91504 -11.77855 -11.54154 -11.44801 -11.07671 -10.91914 -10.78111 -10.42037 -10.33595 -10.30647 -10.20984 -10.17027 -10.07031 -9.50273 -9.43928 -9.11506 -8.45200 -8.05060 -7.94130 -6.40456 -3.80950 0.20961 0.91743 1.26944 1.71708 3.02188 3.16960 3.17195 3.27420 3.34846 3.81987 3.93083 4.05748 4.28969 4.58045 4.68354 4.85392 4.90219 4.97673 5.04578 5.20258 5.25650 5.28389 5.35189 5.49400 5.57277 5.62715 5.70282 5.80794 5.86699 5.93195 5.98971 6.05046 6.15093 6.27769 6.28758 6.43463 6.65106 7.00481 7.17869 7.36530 7.56726 7.59652 7.98729 8.08214 8.63301 9.19870 9.56360 10.08178 10.77447 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008518 B = 0.003004 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.505040 B = 9319.278951 C =12047.622109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.152 4.152 4 C 0.080 3.920 5 H 0.050 0.950 6 C 0.113 3.887 7 N -0.712 5.712 8 C 0.597 3.403 9 O -0.536 6.536 10 C 0.005 3.995 11 C -0.223 4.223 12 S 0.209 5.791 13 C 0.004 3.996 14 N -0.440 5.440 15 N -0.660 5.660 16 C 0.049 3.951 17 C 0.443 3.557 18 O -0.580 6.580 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.409 0.591 38 H 0.190 0.810 39 H 0.207 0.793 40 H 0.348 0.652 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 15.325 15.294 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.209 4.209 4 C -0.030 4.030 5 H 0.068 0.932 6 C -0.011 4.011 7 N -0.364 5.364 8 C 0.380 3.620 9 O -0.414 6.414 10 C -0.130 4.130 11 C -0.366 4.366 12 S 0.464 5.536 13 C -0.296 4.296 14 N -0.154 5.154 15 N -0.295 5.295 16 C -0.083 4.083 17 C 0.228 3.772 18 O -0.463 6.463 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.245 0.755 38 H 0.207 0.793 39 H 0.224 0.776 40 H 0.169 0.831 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.444 15.462 15.617 21.981 hybrid contribution 1.142 -0.888 -0.680 1.598 sum 1.586 14.574 14.937 20.929 Atomic orbital electron populations 1.21806 0.94352 1.03408 1.00486 1.21029 0.97118 0.94770 0.97105 1.21936 1.00783 0.96269 1.01950 1.21830 0.97371 0.89582 0.94243 0.93210 1.21829 1.01867 0.95073 0.82299 1.45878 1.56073 1.28867 1.05551 1.16997 0.79231 0.83769 0.81993 1.90814 1.39795 1.24355 1.86400 1.20503 1.03256 0.94837 0.94400 1.26638 1.06848 1.06749 0.96330 1.82951 1.44388 1.14235 1.12037 1.28529 1.05005 1.05550 0.90539 1.66967 1.12788 1.07536 1.28109 1.60027 1.48571 0.99778 1.21075 1.21749 0.93484 0.93549 0.99539 1.19784 0.87114 0.85811 0.84495 1.90533 1.22630 1.82180 1.50984 1.41866 1.20703 1.09263 1.48388 1.19747 1.05295 0.85155 1.32480 0.87914 1.25247 0.95752 1.00234 0.96740 1.69618 1.13611 1.34774 1.36399 0.85818 0.79077 0.81612 0.77950 1.19230 1.20766 1.20800 0.93116 0.93556 0.90549 0.90589 0.92865 0.92458 0.92506 0.89601 0.90456 0.75494 0.79298 0.77606 0.83110 0.89466 0.93851 0.77529 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.67 37.16 0.32 -1.45 16 2 C -0.08 -0.93 2.84 -90.62 -0.26 -1.19 16 3 C -0.15 -1.43 8.71 37.16 0.32 -1.10 16 4 C 0.08 0.99 2.01 -67.71 -0.14 0.85 16 5 H 0.05 0.58 7.84 -51.93 -0.41 0.17 16 6 C 0.11 1.37 4.60 -4.04 -0.02 1.35 16 7 N -0.71 -9.17 4.97 -61.43 -0.31 -9.48 16 8 C 0.60 8.34 7.80 -12.59 -0.10 8.24 16 9 O -0.54 -8.62 16.71 5.25 0.09 -8.53 16 10 C 0.01 0.06 6.70 -84.53 -0.57 -0.50 16 11 C -0.22 -2.13 10.62 29.66 0.31 -1.82 16 12 S 0.21 1.35 22.96 -107.50 -2.47 -1.12 16 13 C 0.00 0.03 12.17 51.43 0.63 0.66 16 14 N -0.44 -5.16 10.12 -12.36 -0.13 -5.28 16 15 N -0.66 -10.41 5.12 -108.00 -0.55 -10.97 16 16 C 0.05 0.85 5.93 -4.98 -0.03 0.82 16 17 C 0.44 10.39 7.83 -10.98 -0.09 10.30 16 18 O -0.58 -15.76 15.89 5.55 0.09 -15.67 16 19 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.05 0.59 6.30 -51.93 -0.33 0.27 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.15 7.63 -51.93 -0.40 0.76 16 31 H 0.08 0.94 7.46 -51.93 -0.39 0.55 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.52 6.87 -51.93 -0.36 0.16 16 35 H 0.09 1.15 6.15 -51.93 -0.32 0.83 16 36 H 0.08 0.88 6.86 -51.92 -0.36 0.52 16 37 H 0.41 5.23 6.92 -40.82 -0.28 4.95 16 38 H 0.19 1.59 8.03 -52.49 -0.42 1.17 16 39 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.35 5.81 6.61 -39.29 -0.26 5.55 16 41 H 0.09 1.39 7.42 -51.93 -0.39 1.01 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -33.64 380.13 -7.60 -41.24 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -5.85 Total: 17.95 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 0.15 Total: 8.21 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.32 Total: -63.88 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.18 Total: -24.20 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.47 Total: -1.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.64 -7.60 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482522331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.871 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds