Wall clock time and date at job start Sat Apr 11 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29944 * 126.28747 * 2 1 4 4 O 1.21307 * 110.24831 * 179.68690 * 3 2 1 5 5 C 1.33643 * 109.80972 * 0.46451 * 4 3 2 6 6 C 1.50703 * 126.55082 * 179.80095 * 5 4 3 7 7 H 1.09000 * 109.46759 * 164.68906 * 6 5 4 8 8 C 1.52998 * 109.47302 * 284.69277 * 6 5 4 9 9 N 1.46906 * 109.46991 * 44.69353 * 6 5 4 10 10 C 1.46898 * 110.99888 * 154.99914 * 9 6 5 11 11 C 1.50705 * 109.46661 * 180.02562 * 10 9 6 12 12 C 1.30997 * 120.00113 * 125.00379 * 11 10 9 13 13 C 1.50694 * 120.00327 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47524 * 124.99445 * 13 12 11 15 15 C 1.34773 * 120.00602 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99661 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00466 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.47254 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99778 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00340 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99807 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00066 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99895 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46813 * 89.99962 * 23 21 19 25 25 H 1.48498 * 109.46860 * 209.99660 * 23 21 19 26 26 H 1.48499 * 109.47064 * 329.99705 * 23 21 19 27 27 N 1.31129 * 106.89704 * 359.54127 * 5 4 3 28 28 H 1.08995 * 109.46975 * 270.03204 * 1 2 3 29 29 H 1.09003 * 109.47050 * 30.02528 * 1 2 3 30 30 H 1.08996 * 109.47380 * 150.01921 * 1 2 3 31 31 H 1.09001 * 109.47093 * 179.97438 * 8 6 5 32 32 H 1.09002 * 109.47121 * 299.99776 * 8 6 5 33 33 H 1.09002 * 109.46901 * 59.99673 * 8 6 5 34 34 H 1.00902 * 110.99923 * 278.95855 * 9 6 5 35 35 H 1.08995 * 109.47296 * 299.99911 * 10 9 6 36 36 H 1.08997 * 109.47334 * 60.00212 * 10 9 6 37 37 H 1.07994 * 119.99865 * 304.99556 * 11 10 9 38 38 H 1.08004 * 119.99693 * 359.97438 * 12 11 10 39 39 H 1.08996 * 109.47504 * 244.99921 * 13 12 11 40 40 H 1.09003 * 109.47197 * 5.00134 * 13 12 11 41 41 H 0.96999 * 119.99553 * 0.02562 * 14 13 12 42 42 H 1.09005 * 109.47091 * 300.00660 * 17 15 14 43 43 H 1.09004 * 109.47159 * 60.00056 * 17 15 14 44 44 H 0.96999 * 119.99978 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5298 -0.6212 0.0007 6 6 4.7969 -1.4371 0.0012 7 1 4.5648 -2.4684 0.2674 8 6 5.4282 -1.3996 -1.3919 9 7 5.7385 -0.8786 0.9808 10 6 6.6807 -1.9038 1.4491 11 6 7.6282 -1.2952 2.4506 12 6 7.7541 -1.8278 3.6408 13 6 8.7019 -1.2197 4.6421 14 7 7.9772 -0.9158 5.8785 15 6 8.6268 -0.3625 6.9218 16 8 9.8111 -0.1157 6.8368 17 6 7.8815 -0.0506 8.1938 18 16 9.0199 0.6800 9.3964 19 6 7.9160 0.9376 10.7454 20 1 6.8770 0.6570 10.6542 21 6 8.3818 1.5003 11.9257 22 7 7.5573 1.6923 12.9336 23 14 10.1789 1.9851 12.0836 24 1 10.3537 3.3902 11.6358 25 1 10.6021 1.8613 13.5016 26 1 11.0093 1.0894 11.2391 27 7 2.3030 -1.0841 0.0005 28 1 -0.3633 0.0006 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 6.3449 -1.9894 -1.3914 32 1 4.7296 -1.8141 -2.1187 33 1 5.6602 -0.3684 -1.6580 34 1 6.2291 -0.0841 0.5984 35 1 6.1283 -2.7171 1.9196 36 1 7.2466 -2.2914 0.6019 37 1 8.2034 -0.4201 2.1871 38 1 7.1785 -2.7029 3.9044 39 1 9.5058 -1.9240 4.8558 40 1 9.1227 -0.3013 4.2327 41 1 7.0301 -1.1136 5.9466 42 1 7.0775 0.6540 7.9805 43 1 7.4605 -0.9690 8.6029 44 1 7.8827 2.0858 13.7582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482985350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:29 Heat of formation + Delta-G solvation = 45.591932 kcal Electronic energy + Delta-G solvation = -24968.888905 eV Core-core repulsion = 21051.283094 eV Total energy + Delta-G solvation = -3917.605811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.94569 -39.29763 -38.38018 -36.45998 -35.97877 -34.00920 -32.70151 -32.42156 -30.75881 -29.52591 -29.38776 -26.95616 -25.60672 -25.15790 -23.80585 -23.32503 -21.31629 -20.65546 -19.95719 -18.49906 -17.88237 -17.82619 -16.87515 -16.41715 -16.10545 -15.74756 -15.58279 -15.23091 -14.95254 -14.45972 -14.25170 -14.04292 -13.97981 -13.82307 -13.69809 -13.42150 -13.20016 -12.95605 -12.78570 -12.77231 -12.58109 -12.43784 -12.19164 -11.86610 -11.75389 -11.50562 -11.40033 -11.25102 -10.99501 -10.59825 -10.32650 -9.99122 -9.82039 -9.46054 -9.17412 -8.99512 -8.90513 -8.48570 -6.90170 -6.27329 -3.99003 0.75725 1.60362 1.82715 2.38142 2.82704 2.98694 3.00969 3.34004 3.40715 3.51849 3.56080 3.73617 3.77547 4.13610 4.23325 4.34618 4.34841 4.52780 4.62294 4.75597 4.76716 4.87897 4.94358 4.98350 5.01925 5.06878 5.08825 5.11684 5.14529 5.33014 5.34124 5.42328 5.47964 5.59693 5.68846 5.79107 6.03904 6.09421 6.20565 6.30892 6.55886 6.58251 7.62784 7.79910 7.95752 8.43496 8.49898 9.18810 10.81890 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.001641 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.633194 B =17060.643217 C =18611.942718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.385 5.385 4 O 0.086 5.914 5 C 0.199 3.801 6 C 0.179 3.821 7 H 0.125 0.875 8 C -0.184 4.184 9 N -0.681 5.681 10 C 0.090 3.910 11 C -0.141 4.141 12 C -0.153 4.153 13 C 0.150 3.850 14 N -0.733 5.733 15 C 0.531 3.469 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 N -0.483 5.483 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.355 0.645 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.401 0.599 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 -9.740 -33.095 35.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.093 5.093 4 O 0.028 5.972 5 C -0.022 4.022 6 C 0.067 3.933 7 H 0.143 0.857 8 C -0.244 4.244 9 N -0.313 5.313 10 C -0.037 4.037 11 C -0.161 4.161 12 C -0.172 4.172 13 C 0.026 3.974 14 N -0.388 5.388 15 C 0.316 3.684 16 O -0.396 6.396 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 N -0.218 5.218 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.175 0.825 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.235 0.765 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.822 -8.825 -32.510 34.583 hybrid contribution -0.585 -0.179 -0.247 0.660 sum -8.407 -9.004 -32.757 34.997 Atomic orbital electron populations 1.20149 0.82880 1.04613 1.04501 1.25907 1.00633 0.83420 1.00658 1.74668 0.89451 1.23934 1.21283 1.85287 1.22198 1.24599 1.65107 1.28637 0.96432 0.82193 0.94955 1.19940 0.84620 0.96164 0.92613 0.85711 1.22550 1.02138 1.03916 0.95797 1.60334 1.21072 1.10250 1.39647 1.21075 0.92176 0.93683 0.96803 1.22682 0.98195 1.00050 0.95154 1.22928 0.99488 1.00245 0.94536 1.20270 0.93738 0.99940 0.83433 1.45938 1.13397 1.65592 1.13864 1.20294 0.87575 0.76307 0.84175 1.90697 1.15400 1.51255 1.82207 1.23279 1.03225 1.05044 0.95905 1.84772 1.15807 1.80619 1.10401 1.22325 0.97774 1.48060 0.98729 0.89373 1.24720 0.98282 0.93917 0.94432 1.69939 1.35289 1.42355 1.04115 0.86728 0.85289 0.80989 0.78802 1.19211 1.19954 1.15922 1.71850 0.99558 1.29608 1.20749 0.89166 0.89479 0.89049 0.90153 0.90799 0.91088 0.82471 0.89830 0.93234 0.86615 0.86503 0.90732 0.91185 0.76483 0.88455 0.88426 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.17 1.59 8.22 -156.38 -1.28 0.31 16 3 N -0.39 -4.22 12.16 30.90 0.38 -3.85 16 4 O 0.09 0.85 11.31 18.10 0.20 1.06 16 5 C 0.20 1.64 7.35 -13.05 -0.10 1.54 16 6 C 0.18 0.84 3.13 -68.86 -0.22 0.63 16 7 H 0.13 0.51 7.80 -51.93 -0.40 0.10 16 8 C -0.18 -0.50 9.14 37.16 0.34 -0.16 16 9 N -0.68 -3.46 6.22 -109.22 -0.68 -4.14 16 10 C 0.09 0.38 5.92 -4.97 -0.03 0.35 16 11 C -0.14 -0.84 9.38 -36.02 -0.34 -1.18 16 12 C -0.15 -1.09 9.24 -36.03 -0.33 -1.42 16 13 C 0.15 1.57 6.11 -5.20 -0.03 1.54 16 14 N -0.73 -9.26 5.55 -61.48 -0.34 -9.60 16 15 C 0.53 9.44 7.85 -10.99 -0.09 9.36 16 16 O -0.52 -11.25 15.86 5.56 0.09 -11.17 16 17 C -0.12 -2.42 6.16 36.00 0.22 -2.19 16 18 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 19 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 23 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 27 N -0.48 -4.68 11.55 -9.87 -0.11 -4.79 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.11 7.45 -51.93 -0.39 -0.27 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.20 8.13 -51.93 -0.42 -0.23 16 34 H 0.36 1.50 8.46 -39.29 -0.33 1.17 16 35 H 0.08 0.35 7.70 -51.93 -0.40 -0.05 16 36 H 0.05 0.13 7.43 -51.93 -0.39 -0.25 16 37 H 0.12 0.67 7.84 -52.49 -0.41 0.26 16 38 H 0.12 0.72 7.84 -52.48 -0.41 0.31 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 41 H 0.40 4.05 8.46 -40.82 -0.35 3.70 16 42 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 43 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -36.91 394.66 -8.15 -45.06 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.44 Total: -0.80 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.26 Total: -3.33 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.02 Total: -48.34 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.29 Total: -10.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.91 -8.15 -45.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482985350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.652 kcal (2) G-P(sol) polarization free energy of solvation -36.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds