Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29941 * 126.28917 * 2 1 4 4 O 1.21308 * 110.25332 * 179.68786 * 3 2 1 5 5 C 1.33648 * 109.80810 * 0.46452 * 4 3 2 6 6 C 1.50693 * 126.54943 * 179.80688 * 5 4 3 7 7 H 1.08996 * 109.46912 * 164.69067 * 6 5 4 8 8 C 1.53003 * 109.47095 * 284.68703 * 6 5 4 9 9 N 1.46900 * 109.47448 * 44.68682 * 6 5 4 10 10 C 1.46901 * 111.00077 * 155.00012 * 9 6 5 11 11 C 1.50694 * 109.47327 * 180.02562 * 10 9 6 12 12 C 1.31000 * 120.00245 * 127.00718 * 11 10 9 13 13 C 1.50703 * 119.99976 * 7.55935 * 12 11 10 14 14 N 1.46498 * 109.47118 * 127.15439 * 13 12 11 15 15 C 1.34775 * 119.99956 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00225 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99865 * 179.72390 * 15 14 13 18 18 S 1.80995 * 109.47270 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00228 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00029 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00316 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99623 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00356 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46854 * 59.99818 * 23 21 19 25 25 H 1.48504 * 109.47080 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46816 * 299.99882 * 23 21 19 27 27 N 1.31132 * 106.89555 * 359.54415 * 5 4 3 28 28 H 1.08996 * 109.47461 * 270.02679 * 1 2 3 29 29 H 1.09002 * 109.47044 * 30.02850 * 1 2 3 30 30 H 1.09000 * 109.47179 * 150.01960 * 1 2 3 31 31 H 1.09007 * 109.46993 * 300.00422 * 8 6 5 32 32 H 1.09006 * 109.46750 * 59.99893 * 8 6 5 33 33 H 1.08995 * 109.47474 * 180.02562 * 8 6 5 34 34 H 1.00907 * 110.99531 * 31.04850 * 9 6 5 35 35 H 1.09003 * 109.46890 * 60.00019 * 10 9 6 36 36 H 1.08998 * 109.47079 * 300.00103 * 10 9 6 37 37 H 1.08001 * 120.00036 * 307.01443 * 11 10 9 38 38 H 1.08003 * 120.00426 * 187.56035 * 12 11 10 39 39 H 1.09000 * 109.46979 * 7.15622 * 13 12 11 40 40 H 1.09003 * 109.47311 * 247.15736 * 13 12 11 41 41 H 0.97003 * 119.99619 * 0.02562 * 14 13 12 42 42 H 1.09003 * 109.47342 * 300.00916 * 17 15 14 43 43 H 1.09006 * 109.46860 * 60.00224 * 17 15 14 44 44 H 0.97006 * 119.99774 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5299 -0.6213 0.0007 6 6 4.7969 -1.4371 0.0013 7 1 4.5649 -2.4683 0.2674 8 6 5.4283 -1.3996 -1.3919 9 7 5.7385 -0.8785 0.9807 10 6 6.6808 -1.9037 1.4491 11 6 7.6282 -1.2952 2.4505 12 6 7.7835 -1.8506 3.6268 13 6 7.1498 -3.1863 3.9189 14 7 8.1683 -4.1098 4.4250 15 6 7.8292 -5.3715 4.7557 16 8 6.6810 -5.7426 4.6339 17 6 8.8781 -6.3234 5.2703 18 16 8.1168 -7.9271 5.6227 19 6 9.5270 -8.8168 6.1921 20 1 10.4908 -8.3314 6.2346 21 6 9.3995 -10.1419 6.5851 22 7 8.2248 -10.7338 6.5328 23 14 10.8944 -11.0850 7.1894 24 1 11.4559 -10.4084 8.3861 25 1 10.4949 -12.4701 7.5463 26 1 11.9205 -11.1260 6.1168 27 7 2.3030 -1.0842 0.0004 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.7295 -1.8140 -2.1187 32 1 5.6602 -0.3683 -1.6580 33 1 6.3445 -1.9900 -1.3917 34 1 5.2473 -0.4579 1.7554 35 1 7.2466 -2.2912 0.6019 36 1 6.1284 -2.7170 1.9197 37 1 8.1792 -0.4011 2.1986 38 1 8.3657 -1.3512 4.3872 39 1 6.7154 -3.5901 3.0044 40 1 6.3680 -3.0615 4.6682 41 1 9.0866 -3.8128 4.5227 42 1 9.6562 -6.4485 4.5172 43 1 9.3174 -5.9209 6.1832 44 1 8.1356 -11.6598 6.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482985351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = 54.256775 kcal Electronic energy + Delta-G solvation = -25276.881399 eV Core-core repulsion = 21359.651323 eV Total energy + Delta-G solvation = -3917.230075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.01139 -39.32259 -38.25368 -36.52804 -36.01917 -33.83673 -32.62720 -32.43591 -30.54957 -29.52803 -29.37362 -26.61860 -25.60052 -25.18748 -24.19138 -23.62070 -21.06751 -20.45620 -19.28430 -18.54116 -18.01052 -17.66931 -17.09772 -16.37289 -16.06478 -15.87788 -15.58118 -14.90905 -14.81060 -14.44017 -14.33663 -14.04472 -13.97689 -13.85455 -13.46693 -13.29696 -13.07468 -13.02036 -12.73113 -12.68518 -12.54991 -12.33464 -11.89274 -11.81191 -11.79701 -11.46026 -11.16974 -11.05579 -11.04521 -10.77958 -10.34263 -9.84796 -9.78770 -9.35327 -9.19007 -9.06896 -8.79592 -8.25537 -6.51416 -6.22486 -3.93381 0.67596 1.60203 1.77564 2.30229 2.99620 3.06180 3.09079 3.22876 3.27410 3.32825 3.52418 3.74278 3.80675 4.19633 4.29494 4.36252 4.56591 4.65247 4.68886 4.81524 4.92739 4.95609 5.07430 5.10277 5.12593 5.13765 5.24023 5.27652 5.35020 5.43870 5.51888 5.54566 5.58258 5.69525 5.75948 5.87187 6.11966 6.13660 6.20866 6.32322 6.56500 6.69426 7.58285 7.67687 7.74375 8.34020 8.57412 9.22670 10.84856 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.001593 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.013864 B =17567.431257 C =18284.610786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.167 3.833 3 N -0.386 5.386 4 O 0.092 5.908 5 C 0.180 3.820 6 C 0.179 3.821 7 H 0.096 0.904 8 C -0.142 4.142 9 N -0.675 5.675 10 C 0.070 3.930 11 C -0.136 4.136 12 C -0.163 4.163 13 C 0.137 3.863 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.476 5.476 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.349 0.651 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 24.856 -14.382 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 N -0.093 5.093 4 O 0.033 5.967 5 C -0.041 4.041 6 C 0.068 3.932 7 H 0.114 0.886 8 C -0.201 4.201 9 N -0.308 5.308 10 C -0.058 4.058 11 C -0.155 4.155 12 C -0.182 4.182 13 C 0.014 3.986 14 N -0.389 5.389 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.210 5.210 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.168 0.832 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.233 0.767 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.505 24.812 -15.039 30.235 hybrid contribution 2.328 -0.485 1.239 2.681 sum -6.178 24.327 -13.800 28.643 Atomic orbital electron populations 1.20167 0.82749 1.04777 1.04518 1.25962 1.00725 0.83345 1.00524 1.74672 0.89496 1.23915 1.21210 1.85337 1.22048 1.24402 1.64960 1.28802 0.96624 0.82432 0.96279 1.20132 0.82204 0.94366 0.96513 0.88649 1.21880 1.01444 1.04061 0.92707 1.60621 1.19223 1.32530 1.18420 1.21353 0.93737 0.92597 0.98077 1.22709 0.98293 1.01005 0.93496 1.22999 1.01603 0.96447 0.97176 1.20458 0.91314 0.86841 1.00031 1.45960 1.12286 1.11940 1.68748 1.20344 0.89738 0.81532 0.76642 1.90704 1.20578 1.76109 1.51869 1.23533 1.00957 1.02239 1.03663 1.85395 1.14190 0.99212 1.84552 1.22830 0.95583 0.99368 1.50724 0.90954 1.24993 0.96902 0.96551 0.95106 1.70012 1.22781 1.12718 1.44773 0.86221 0.81547 0.78533 0.79178 1.19940 1.20804 1.19928 1.71939 0.99587 1.29573 1.19943 0.89142 0.89423 0.88882 0.91504 0.90837 0.90190 0.83195 0.89184 0.92537 0.85829 0.86076 0.90512 0.91052 0.76670 0.89150 0.89192 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.00 0.38 0.01 16 2 C 0.17 1.61 8.22 -156.37 -1.28 0.32 16 3 N -0.39 -4.09 12.16 30.90 0.38 -3.71 16 4 O 0.09 0.90 11.31 18.09 0.20 1.10 16 5 C 0.18 1.60 7.00 -13.06 -0.09 1.51 16 6 C 0.18 1.20 3.16 -68.87 -0.22 0.99 16 7 H 0.10 0.65 7.80 -51.93 -0.41 0.25 16 8 C -0.14 -0.78 9.40 37.16 0.35 -0.43 16 9 N -0.67 -4.31 6.29 -109.23 -0.69 -5.00 16 10 C 0.07 0.46 5.57 -4.98 -0.03 0.43 16 11 C -0.14 -0.88 9.77 -36.03 -0.35 -1.23 16 12 C -0.16 -1.20 9.63 -36.02 -0.35 -1.55 16 13 C 0.14 1.47 5.76 -5.19 -0.03 1.44 16 14 N -0.73 -9.30 5.55 -61.47 -0.34 -9.64 16 15 C 0.53 9.66 7.85 -10.98 -0.09 9.58 16 16 O -0.52 -11.58 15.86 5.56 0.09 -11.49 16 17 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 23 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 N -0.48 -4.94 11.55 -9.86 -0.11 -5.05 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.37 7.45 -51.93 -0.39 -0.02 16 34 H 0.35 2.29 8.34 -39.29 -0.33 1.96 16 35 H 0.09 0.54 7.44 -51.93 -0.39 0.16 16 36 H 0.06 0.43 5.21 -51.93 -0.27 0.16 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.08 0.86 5.30 -51.93 -0.28 0.59 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.40 3.88 8.46 -40.82 -0.35 3.54 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -35.75 392.76 -8.51 -44.26 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.17 Total: 1.16 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.29 Total: -4.64 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.03 Total: -48.71 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.29 Total: -10.38 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.75 -8.51 -44.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482985351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.521 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds