Wall clock time and date at job start Sat Apr 11 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29946 * 126.28575 * 2 1 4 4 O 1.21296 * 110.25040 * 180.02562 * 3 2 1 5 5 C 1.33645 * 109.81350 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.55452 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47279 * 195.02024 * 6 5 4 8 8 C 1.53003 * 109.47123 * 75.02100 * 6 5 4 9 9 N 1.46896 * 109.46774 * 315.02334 * 6 5 4 10 10 C 1.46909 * 110.99762 * 204.99956 * 9 6 5 11 11 C 1.50700 * 109.46719 * 180.02562 * 10 9 6 12 12 C 1.31000 * 119.99681 * 127.16348 * 11 10 9 13 13 C 1.50699 * 120.00216 * 7.55739 * 12 11 10 14 14 N 1.46504 * 109.47344 * 127.00419 * 13 12 11 15 15 C 1.34771 * 119.99773 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00507 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99687 * 179.97438 * 15 14 13 18 18 S 1.81007 * 109.47022 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99803 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00353 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99722 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00406 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99957 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46572 * 60.00009 * 23 21 19 25 25 H 1.48500 * 109.47008 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47010 * 300.00047 * 23 21 19 27 27 N 1.31130 * 106.89600 * 0.22328 * 5 4 3 28 28 H 1.08999 * 109.46834 * 89.97690 * 1 2 3 29 29 H 1.08998 * 109.47276 * 209.97858 * 1 2 3 30 30 H 1.09004 * 109.46951 * 329.97478 * 1 2 3 31 31 H 1.08995 * 109.47262 * 180.02562 * 8 6 5 32 32 H 1.09007 * 109.47082 * 300.00446 * 8 6 5 33 33 H 1.08996 * 109.47227 * 59.99860 * 8 6 5 34 34 H 1.00900 * 111.00212 * 81.04868 * 9 6 5 35 35 H 1.09003 * 109.46980 * 300.00008 * 10 9 6 36 36 H 1.08995 * 109.47022 * 59.99959 * 10 9 6 37 37 H 1.08000 * 120.00194 * 307.15529 * 11 10 9 38 38 H 1.08004 * 119.99960 * 187.55385 * 12 11 10 39 39 H 1.09003 * 109.46779 * 247.00483 * 13 12 11 40 40 H 1.09003 * 109.47335 * 7.00388 * 13 12 11 41 41 H 0.96994 * 119.99676 * 359.97438 * 14 13 12 42 42 H 1.09003 * 109.47308 * 299.99958 * 17 15 14 43 43 H 1.08997 * 109.47060 * 60.00369 * 17 15 14 44 44 H 0.96999 * 120.00242 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5299 -0.6211 -0.0015 6 6 4.7970 -1.4370 -0.0029 7 1 4.5650 -2.4680 -0.2697 8 6 5.4286 -1.4005 1.3902 9 7 5.7383 -0.8776 -0.9821 10 6 6.6805 -1.9024 -1.4514 11 6 7.6286 -1.2927 -2.4517 12 6 8.9223 -1.4173 -2.2882 13 6 9.4619 -2.3099 -1.2004 14 7 10.4197 -3.2572 -1.7763 15 6 11.0340 -4.1590 -0.9852 16 8 10.7936 -4.1866 0.2032 17 6 12.0188 -5.1338 -1.5777 18 16 12.6669 -6.2058 -0.2711 19 6 13.7601 -7.2137 -1.2166 20 1 13.8570 -7.0548 -2.2804 21 6 14.4958 -8.2127 -0.5943 22 7 14.3773 -8.4068 0.7023 23 14 15.6542 -9.2817 -1.5967 24 1 16.6832 -8.4269 -2.2413 25 1 16.3173 -10.2655 -0.7035 26 1 14.8834 -10.0020 -2.6417 27 7 2.3031 -1.0841 -0.0064 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 6.3453 -1.9902 1.3891 32 1 5.6606 -0.3694 1.6572 33 1 4.7301 -1.8155 2.1168 34 1 6.2291 -0.0835 -0.5992 35 1 7.2466 -2.2906 -0.6046 36 1 6.1281 -2.7153 -1.9225 37 1 7.2414 -0.7531 -3.3033 38 1 9.6023 -0.8803 -2.9330 39 1 9.9610 -1.7019 -0.4458 40 1 8.6404 -2.8586 -0.7398 41 1 10.6116 -3.2353 -2.7268 42 1 11.5191 -5.7421 -2.3317 43 1 12.8401 -4.5854 -2.0390 44 1 14.8917 -9.1047 1.1372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482985352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:34 Heat of formation + Delta-G solvation = 52.575123 kcal Electronic energy + Delta-G solvation = -25214.152997 eV Core-core repulsion = 21296.850000 eV Total energy + Delta-G solvation = -3917.302997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.91292 -39.34117 -38.33213 -36.45583 -36.03125 -33.82579 -32.64819 -32.44207 -30.47727 -29.49591 -29.31117 -26.40764 -25.58866 -25.22254 -24.28169 -23.72827 -21.17235 -20.47593 -19.28491 -18.46165 -17.91115 -17.62398 -17.17342 -16.39622 -15.97087 -15.69899 -15.36568 -15.10839 -14.81663 -14.52168 -14.30382 -14.01739 -13.96583 -13.83630 -13.56768 -13.39882 -13.15637 -13.06681 -12.80137 -12.72192 -12.54548 -12.08502 -12.07025 -11.84188 -11.67808 -11.38237 -11.25122 -11.06183 -11.04940 -10.78426 -10.26767 -9.85518 -9.80393 -9.36301 -9.20290 -9.07396 -8.80276 -8.26468 -6.52058 -6.23065 -3.94004 0.78966 1.59405 1.85770 2.43057 3.03060 3.05053 3.10007 3.22545 3.27116 3.32519 3.59078 3.76784 3.85843 4.19129 4.27476 4.35069 4.45397 4.60793 4.67212 4.78180 4.93259 4.96664 5.06866 5.10815 5.12113 5.13097 5.18845 5.21385 5.30827 5.48478 5.51005 5.55388 5.58653 5.63269 5.74711 5.86511 6.11325 6.12620 6.19967 6.31757 6.56342 6.73311 7.57784 7.66407 7.82690 8.33486 8.56025 9.22213 10.84283 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.001483 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.621230 B =18878.717985 C =19346.213631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.388 5.388 4 O 0.084 5.916 5 C 0.204 3.796 6 C 0.178 3.822 7 H 0.127 0.873 8 C -0.186 4.186 9 N -0.680 5.680 10 C 0.073 3.927 11 C -0.136 4.136 12 C -0.162 4.162 13 C 0.137 3.863 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.484 5.484 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.355 0.645 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.589 18.430 -5.082 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.097 5.097 4 O 0.026 5.974 5 C -0.017 4.017 6 C 0.065 3.935 7 H 0.144 0.856 8 C -0.246 4.246 9 N -0.312 5.312 10 C -0.055 4.055 11 C -0.156 4.156 12 C -0.181 4.181 13 C 0.014 3.986 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.218 5.218 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.174 0.826 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.014 18.706 -3.455 30.635 hybrid contribution 1.810 -0.662 -1.853 2.674 sum -22.204 18.043 -5.308 29.099 Atomic orbital electron populations 1.20140 0.82950 1.04661 1.04339 1.25904 1.00598 0.83489 1.00663 1.74642 0.89499 1.23991 1.21574 1.85275 1.22144 1.24708 1.65231 1.28692 0.96468 0.82034 0.94522 1.19981 0.84451 0.96152 0.92903 0.85571 1.22563 1.02488 1.03970 0.95534 1.60291 1.20997 1.10350 1.39602 1.21303 0.92935 0.93939 0.97290 1.22714 0.93590 1.00365 0.98909 1.22994 0.96349 0.99143 0.99642 1.20459 0.92776 0.90596 0.94780 1.45963 1.45292 1.35740 1.11958 1.20336 0.80707 0.80474 0.86689 1.90699 1.62852 1.70386 1.15361 1.23535 1.00121 1.00733 1.06034 1.85384 1.52883 1.36678 1.08403 1.22829 1.28668 1.20534 0.96475 0.90960 1.24984 0.96685 0.96643 0.95183 1.70004 1.39876 1.31679 1.08736 0.86228 0.80214 0.79570 0.79517 1.19934 1.20798 1.19929 1.71877 0.99584 1.29532 1.20807 0.89310 0.88999 0.89521 0.89756 0.91116 0.90712 0.82562 0.92284 0.89423 0.85988 0.86096 0.90956 0.90510 0.76669 0.89169 0.89177 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.17 1.60 8.22 -156.37 -1.28 0.32 16 3 N -0.39 -4.20 12.16 30.90 0.38 -3.83 16 4 O 0.08 0.84 11.31 18.10 0.20 1.05 16 5 C 0.20 1.83 7.35 -13.06 -0.10 1.73 16 6 C 0.18 1.14 3.13 -68.86 -0.22 0.93 16 7 H 0.13 0.78 7.80 -51.93 -0.40 0.37 16 8 C -0.19 -1.01 9.14 37.16 0.34 -0.67 16 9 N -0.68 -4.19 6.22 -109.22 -0.68 -4.87 16 10 C 0.07 0.46 5.57 -4.97 -0.03 0.43 16 11 C -0.14 -0.86 9.77 -36.03 -0.35 -1.22 16 12 C -0.16 -1.14 9.63 -36.03 -0.35 -1.48 16 13 C 0.14 1.39 5.76 -5.19 -0.03 1.36 16 14 N -0.73 -9.03 5.55 -61.47 -0.34 -9.37 16 15 C 0.53 9.46 7.85 -10.99 -0.09 9.38 16 16 O -0.52 -11.29 15.86 5.55 0.09 -11.20 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 23 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 N -0.48 -4.97 11.55 -9.87 -0.11 -5.08 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.45 7.45 -51.93 -0.39 0.06 16 32 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.35 1.90 8.46 -39.29 -0.33 1.57 16 35 H 0.06 0.39 4.59 -51.93 -0.24 0.16 16 36 H 0.09 0.56 8.05 -51.93 -0.42 0.15 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.80 5.30 -51.93 -0.27 0.53 16 41 H 0.40 3.79 8.46 -40.82 -0.35 3.45 16 42 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -35.86 392.87 -8.52 -44.38 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.17 Total: 0.64 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.30 Total: -4.78 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.03 Total: -48.32 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.29 Total: -10.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.86 -8.52 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482985352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.958 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds