Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29419 * 125.70092 * 2 1 4 4 N 1.26390 * 116.47739 * 179.75557 * 3 2 1 5 5 C 1.29423 * 116.47628 * 0.53022 * 4 3 2 6 6 C 1.50696 * 125.69486 * 179.76963 * 5 4 3 7 7 O 1.42908 * 109.47023 * 89.69968 * 6 5 4 8 8 C 1.42894 * 113.99811 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46777 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00304 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99849 * 180.02562 * 9 8 7 12 12 C 1.47422 * 125.64735 * 359.97254 * 11 9 8 13 13 C 1.54914 * 104.83149 * 155.91003 * 12 11 9 14 14 H 1.08997 * 111.00426 * 278.89880 * 13 12 11 15 15 N 1.46498 * 111.00769 * 155.08275 * 13 12 11 16 16 C 1.36943 * 119.99752 * 86.17632 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.55160 * 101.57963 * 37.01046 * 13 12 11 25 25 C 1.47018 * 125.64945 * 180.02562 * 11 9 8 26 26 H 1.09005 * 109.88271 * 61.60414 * 25 11 9 27 27 C 1.53001 * 109.88012 * 300.59426 * 25 11 9 28 28 S 1.71215 * 108.60375 * 359.51027 * 5 4 3 29 29 H 1.09001 * 109.47200 * 269.95629 * 1 2 3 30 30 H 1.09001 * 109.47168 * 29.95514 * 1 2 3 31 31 H 1.09000 * 109.47638 * 149.95470 * 1 2 3 32 32 H 1.08999 * 109.47308 * 329.69755 * 6 5 4 33 33 H 1.09003 * 109.47231 * 209.69401 * 6 5 4 34 34 H 1.09000 * 109.47656 * 60.00200 * 8 7 6 35 35 H 1.08998 * 109.47146 * 299.99473 * 8 7 6 36 36 H 1.08999 * 110.36848 * 37.07151 * 12 11 9 37 37 H 1.09002 * 110.37106 * 274.74595 * 12 11 9 38 38 H 0.97001 * 120.00384 * 266.45988 * 15 13 12 39 39 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 40 40 H 1.08993 * 110.71676 * 82.86336 * 24 13 12 41 41 H 1.09007 * 110.71562 * 206.13336 * 24 13 12 42 42 H 1.09001 * 109.47377 * 61.45750 * 27 25 11 43 43 H 1.09009 * 109.46841 * 181.45184 * 27 25 11 44 44 H 1.08996 * 109.47203 * 301.44891 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5097 0.8484 0.0048 5 6 3.8936 -0.3876 -0.0015 6 6 5.3232 -0.8642 -0.0025 7 8 5.7758 -1.0156 1.3445 8 6 7.1270 -1.4668 1.4564 9 6 7.4966 -1.5897 2.9122 10 8 6.6829 -1.3182 3.7695 11 7 8.7315 -2.0014 3.2615 12 6 9.8130 -2.3629 2.3271 13 6 11.1195 -2.1538 3.1328 14 1 11.4084 -1.1029 3.1429 15 7 12.2017 -2.9879 2.6042 16 6 12.9720 -2.5336 1.5671 17 1 12.7846 -1.5587 1.1419 18 6 13.9937 -3.3262 1.0623 19 7 14.2217 -4.5146 1.5802 20 14 15.0450 -2.7063 -0.3519 21 1 15.7303 -1.4527 0.0532 22 1 16.0582 -3.7337 -0.7029 23 1 14.1818 -2.4401 -1.5306 24 6 10.6924 -2.6277 4.5472 25 6 9.2228 -2.1655 4.6374 26 1 8.6287 -2.9181 5.1559 27 6 9.1382 -0.8320 5.3826 28 16 2.5060 -1.3905 -0.0011 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3634 -0.8895 -0.5145 32 1 5.9491 -0.1347 -0.5164 33 1 5.3861 -1.8233 -0.5167 34 1 7.7907 -0.7500 0.9727 35 1 7.2269 -2.4384 0.9725 36 1 9.7959 -1.7084 1.4556 37 1 9.7182 -3.4050 2.0219 38 1 12.3700 -3.8635 2.9860 39 1 14.9359 -5.0683 1.2278 40 1 10.7612 -3.7125 4.6275 41 1 11.2968 -2.1440 5.3147 42 1 8.0985 -0.5082 5.4311 43 1 9.5278 -0.9551 6.3932 44 1 9.7279 -0.0827 4.8547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486116956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = 5.084452 kcal Electronic energy + Delta-G solvation = -26465.915782 eV Core-core repulsion = 22546.553435 eV Total energy + Delta-G solvation = -3919.362347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62953 -40.10124 -38.35259 -37.08900 -34.24499 -33.77397 -32.05342 -31.38591 -30.76356 -28.47638 -27.95869 -26.59661 -25.51148 -24.62042 -23.93673 -21.93987 -20.34572 -20.22528 -19.71181 -18.89267 -17.49687 -17.31376 -16.84353 -16.47582 -16.04553 -15.78224 -15.34378 -15.21277 -14.57020 -14.28676 -14.13199 -13.67320 -13.57408 -13.41596 -13.29772 -13.11411 -13.06343 -12.86980 -12.63884 -12.41281 -12.16811 -11.90192 -11.81515 -11.23871 -11.01485 -10.82716 -10.80707 -10.68989 -10.61019 -10.35790 -10.16203 -10.10160 -10.04177 -9.99605 -9.83793 -9.61017 -9.07974 -8.43631 -7.16873 -5.91933 -3.23372 -0.02127 0.50442 0.97924 2.11075 2.71061 2.74028 3.34829 3.39985 3.40982 3.44660 3.85263 4.18149 4.38103 4.46000 4.57530 4.66013 4.88616 4.90487 4.97305 5.01140 5.05778 5.06692 5.09231 5.15304 5.24068 5.38146 5.40975 5.53335 5.57797 5.79822 5.80638 6.01881 6.05515 6.16698 6.23760 6.37245 6.45102 6.50354 6.68793 6.78881 7.55855 7.69978 8.19829 8.25004 8.30245 9.37477 9.90667 10.25516 11.29762 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.002161 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.643992 B =12953.863329 C =14284.327559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.020 4.020 3 N -0.262 5.262 4 N -0.237 5.237 5 C -0.019 4.019 6 C 0.142 3.858 7 O -0.356 6.356 8 C 0.049 3.951 9 C 0.530 3.470 10 O -0.530 6.530 11 N -0.608 5.608 12 C 0.068 3.932 13 C 0.174 3.826 14 H 0.065 0.935 15 N -0.712 5.712 16 C -0.251 4.251 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C -0.136 4.136 25 C 0.142 3.858 26 H 0.071 0.929 27 C -0.162 4.162 28 S 0.196 5.804 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.388 0.612 39 H 0.258 0.742 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.125 3.411 -2.503 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.298 4.298 3 N -0.101 5.101 4 N -0.077 5.077 5 C -0.297 4.297 6 C 0.061 3.939 7 O -0.274 6.274 8 C -0.031 4.031 9 C 0.317 3.683 10 O -0.407 6.407 11 N -0.344 5.344 12 C -0.057 4.057 13 C 0.062 3.938 14 H 0.083 0.917 15 N -0.352 5.352 16 C -0.382 4.382 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.739 3.261 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.175 4.175 25 C 0.039 3.961 26 H 0.089 0.911 27 C -0.220 4.220 28 S 0.439 5.561 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.222 0.778 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.560 4.029 -2.042 23.989 hybrid contribution 0.943 -0.011 -1.006 1.379 sum -22.617 4.018 -3.048 23.172 Atomic orbital electron populations 1.20412 0.83733 1.04794 1.04581 1.29352 1.04536 0.92093 1.03806 1.71495 0.96779 1.26764 1.15098 1.71430 1.06537 1.17067 1.12648 1.28686 1.02210 0.92746 1.06086 1.20677 0.86510 1.00990 0.85684 1.88034 1.27548 1.88080 1.23733 1.22264 0.84034 1.01132 0.95680 1.19658 0.80987 0.77658 0.90018 1.90694 1.48968 1.49373 1.51636 1.48544 1.11433 1.65688 1.08752 1.23592 0.88147 1.00562 0.93439 1.21273 0.86911 0.95878 0.89778 0.91687 1.42324 1.33885 1.18987 1.40031 1.19186 1.09746 1.00609 1.08657 0.90999 1.24778 0.99301 0.96455 0.99883 1.69648 1.33797 1.10169 1.43951 0.86257 0.80069 0.77684 0.82069 1.21108 1.21626 1.21139 1.22984 0.93186 1.01878 0.99425 1.21497 0.94996 0.97426 0.82211 0.91139 1.22147 1.03033 0.97043 0.99816 1.83702 0.97208 1.11208 1.63948 0.88879 0.88683 0.89549 0.89158 0.90086 0.89538 0.89666 0.91296 0.90922 0.77797 0.93228 0.90440 0.89994 0.91424 0.91865 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.48 36.00 0.38 0.02 16 2 C -0.02 -0.18 7.53 -13.30 -0.10 -0.28 16 3 N -0.26 -3.40 11.66 32.58 0.38 -3.02 16 4 N -0.24 -3.32 11.66 32.58 0.38 -2.94 16 5 C -0.02 -0.21 7.16 -13.30 -0.10 -0.31 16 6 C 0.14 1.42 6.54 36.00 0.24 1.65 16 7 O -0.36 -4.83 9.86 -55.14 -0.54 -5.37 16 8 C 0.05 0.59 5.42 36.01 0.20 0.79 16 9 C 0.53 8.34 7.71 -10.98 -0.08 8.25 16 10 O -0.53 -10.17 15.39 -14.35 -0.22 -10.39 16 11 N -0.61 -9.16 3.08 -163.01 -0.50 -9.66 16 12 C 0.07 1.07 6.38 -2.53 -0.02 1.05 16 13 C 0.17 3.07 3.68 -65.78 -0.24 2.83 16 14 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 15 N -0.71 -16.04 5.28 -51.35 -0.27 -16.31 16 16 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 17 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 20 Si 0.91 21.05 29.55 -169.99 -5.02 16.02 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.14 -2.02 6.12 -24.90 -0.15 -2.18 16 25 C 0.14 2.05 3.49 -66.96 -0.23 1.82 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 C -0.16 -2.23 9.07 37.16 0.34 -1.89 16 28 S 0.20 1.65 23.04 -107.50 -2.48 -0.83 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.91 7.85 -51.93 -0.41 0.50 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.01 7.48 -51.93 -0.39 0.62 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.39 9.33 7.71 -40.82 -0.31 9.02 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 41 H 0.08 1.14 7.83 -51.92 -0.41 0.74 16 42 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 43 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -33.82 384.25 -8.27 -42.09 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.48 Total: 5.26 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -0.03 Total: 4.93 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.71 Total: -57.49 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.76 Total: -15.77 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.82 -8.27 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486116956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.172 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds