Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29419 * 125.70092 * 2 1 4 4 N 1.26390 * 116.47739 * 179.75557 * 3 2 1 5 5 C 1.29423 * 116.47628 * 0.53022 * 4 3 2 6 6 C 1.50696 * 125.69486 * 179.76963 * 5 4 3 7 7 O 1.42908 * 109.47023 * 89.69968 * 6 5 4 8 8 C 1.42894 * 113.99811 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46777 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00304 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99849 * 180.02562 * 9 8 7 12 12 C 1.47422 * 125.64735 * 359.97254 * 11 9 8 13 13 C 1.54914 * 104.83149 * 155.91003 * 12 11 9 14 14 H 1.08997 * 111.00426 * 278.89880 * 13 12 11 15 15 N 1.46498 * 111.00769 * 155.08275 * 13 12 11 16 16 C 1.36943 * 119.99752 * 86.17632 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.55160 * 101.57963 * 37.01046 * 13 12 11 25 25 C 1.47018 * 125.64945 * 180.02562 * 11 9 8 26 26 H 1.09005 * 109.88271 * 61.60414 * 25 11 9 27 27 C 1.53001 * 109.88012 * 300.59426 * 25 11 9 28 28 S 1.71215 * 108.60375 * 359.51027 * 5 4 3 29 29 H 1.09001 * 109.47200 * 269.95629 * 1 2 3 30 30 H 1.09001 * 109.47168 * 29.95514 * 1 2 3 31 31 H 1.09000 * 109.47638 * 149.95470 * 1 2 3 32 32 H 1.08999 * 109.47308 * 329.69755 * 6 5 4 33 33 H 1.09003 * 109.47231 * 209.69401 * 6 5 4 34 34 H 1.09000 * 109.47656 * 60.00200 * 8 7 6 35 35 H 1.08998 * 109.47146 * 299.99473 * 8 7 6 36 36 H 1.08999 * 110.36848 * 37.07151 * 12 11 9 37 37 H 1.09002 * 110.37106 * 274.74595 * 12 11 9 38 38 H 0.97001 * 120.00384 * 266.45988 * 15 13 12 39 39 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 40 40 H 1.08993 * 110.71676 * 82.86336 * 24 13 12 41 41 H 1.09007 * 110.71562 * 206.13336 * 24 13 12 42 42 H 1.09001 * 109.47377 * 61.45750 * 27 25 11 43 43 H 1.09009 * 109.46841 * 181.45184 * 27 25 11 44 44 H 1.08996 * 109.47203 * 301.44891 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5097 0.8484 0.0048 5 6 3.8936 -0.3876 -0.0015 6 6 5.3232 -0.8642 -0.0025 7 8 5.7758 -1.0156 1.3445 8 6 7.1270 -1.4668 1.4564 9 6 7.4966 -1.5897 2.9122 10 8 6.6829 -1.3182 3.7695 11 7 8.7315 -2.0014 3.2615 12 6 9.8130 -2.3629 2.3271 13 6 11.1195 -2.1538 3.1328 14 1 11.4084 -1.1029 3.1429 15 7 12.2017 -2.9879 2.6042 16 6 12.9720 -2.5336 1.5671 17 1 12.7846 -1.5587 1.1419 18 6 13.9937 -3.3262 1.0623 19 7 14.2217 -4.5146 1.5802 20 14 15.0450 -2.7063 -0.3519 21 1 15.7303 -1.4527 0.0532 22 1 16.0582 -3.7337 -0.7029 23 1 14.1818 -2.4401 -1.5306 24 6 10.6924 -2.6277 4.5472 25 6 9.2228 -2.1655 4.6374 26 1 8.6287 -2.9181 5.1559 27 6 9.1382 -0.8320 5.3826 28 16 2.5060 -1.3905 -0.0011 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3634 -0.8895 -0.5145 32 1 5.9491 -0.1347 -0.5164 33 1 5.3861 -1.8233 -0.5167 34 1 7.7907 -0.7500 0.9727 35 1 7.2269 -2.4384 0.9725 36 1 9.7959 -1.7084 1.4556 37 1 9.7182 -3.4050 2.0219 38 1 12.3700 -3.8635 2.9860 39 1 14.9359 -5.0683 1.2278 40 1 10.7612 -3.7125 4.6275 41 1 11.2968 -2.1440 5.3147 42 1 8.0985 -0.5082 5.4311 43 1 9.5278 -0.9551 6.3932 44 1 9.7279 -0.0827 4.8547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486116956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = -18.206911 kcal Electronic energy + Delta-G solvation = -26466.925771 eV Core-core repulsion = 22546.553435 eV Total energy + Delta-G solvation = -3920.372336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.42982 -41.32557 -39.39324 -38.32017 -35.95272 -34.46499 -33.37388 -32.97895 -31.47323 -29.99389 -28.92367 -27.39354 -26.73530 -25.75896 -25.31031 -23.23394 -21.60660 -21.09701 -20.46652 -20.09206 -19.23687 -18.44535 -17.85713 -17.43885 -17.06079 -16.80921 -16.52223 -16.28410 -16.09133 -15.43315 -15.13280 -14.96986 -14.71376 -14.49178 -14.38411 -14.17337 -13.97719 -13.84040 -13.53717 -13.40044 -13.17259 -13.03903 -12.98098 -12.97185 -12.74050 -12.29623 -12.12245 -12.01916 -11.68870 -11.58103 -11.45718 -11.37135 -11.05986 -10.92515 -10.89003 -10.74516 -10.68125 -9.71519 -9.02705 -7.91909 -5.21633 -0.74112 -0.17069 0.24617 1.27613 1.51034 1.53275 1.54468 1.60198 1.70688 2.55581 2.63059 3.07053 3.37798 3.39770 3.56840 3.73332 3.84126 3.84346 3.97534 4.06349 4.11477 4.14061 4.18035 4.28735 4.36496 4.38577 4.48330 4.53390 4.59240 4.70337 4.70794 4.78454 4.92463 5.02953 5.04496 5.14218 5.25799 5.31074 5.45004 5.57904 5.78850 6.28907 6.47647 7.08717 7.37189 7.41864 8.08623 8.32559 9.30521 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.002161 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.643992 B =12953.863329 C =14284.327559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.021 4.021 3 N -0.306 5.306 4 N -0.279 5.279 5 C -0.045 4.045 6 C 0.138 3.862 7 O -0.387 6.387 8 C 0.052 3.948 9 C 0.524 3.476 10 O -0.570 6.570 11 N -0.606 5.606 12 C 0.082 3.918 13 C 0.166 3.834 14 H 0.063 0.937 15 N -0.723 5.723 16 C -0.241 4.241 17 H 0.081 0.919 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.967 3.033 21 H -0.281 1.281 22 H -0.301 1.301 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.140 3.860 26 H 0.073 0.927 27 C -0.155 4.155 28 S 0.254 5.746 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.377 0.623 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.334 3.251 -3.346 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.298 4.298 3 N -0.145 5.145 4 N -0.118 5.118 5 C -0.324 4.324 6 C 0.058 3.942 7 O -0.305 6.305 8 C -0.027 4.027 9 C 0.313 3.687 10 O -0.449 6.449 11 N -0.341 5.341 12 C -0.043 4.043 13 C 0.056 3.944 14 H 0.081 0.919 15 N -0.362 5.362 16 C -0.373 4.373 17 H 0.099 0.901 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.797 3.203 21 H -0.207 1.207 22 H -0.227 1.227 23 H -0.201 1.201 24 C -0.162 4.162 25 C 0.037 3.963 26 H 0.091 0.909 27 C -0.213 4.213 28 S 0.498 5.502 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.210 0.790 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.802 3.907 -2.890 25.274 hybrid contribution 1.178 0.039 -0.673 1.357 sum -23.625 3.946 -3.563 24.215 Atomic orbital electron populations 1.20687 0.80813 1.06425 1.05832 1.30067 1.06334 0.91943 1.01501 1.71445 0.96960 1.28640 1.17449 1.71374 1.07488 1.18881 1.14106 1.29005 1.03967 0.93084 1.06335 1.20957 0.85922 1.02927 0.84376 1.87979 1.28046 1.88470 1.26044 1.22322 0.84103 1.03140 0.93168 1.20329 0.80409 0.76553 0.91378 1.90676 1.49978 1.51131 1.53155 1.48560 1.11350 1.65337 1.08819 1.23284 0.86938 1.00712 0.93398 1.21425 0.86463 0.95004 0.91540 0.91925 1.42432 1.35033 1.19053 1.39686 1.19568 1.09010 1.00426 1.08286 0.90144 1.25489 1.01158 0.96936 1.02609 1.69793 1.34616 1.11462 1.45689 0.85308 0.78420 0.76751 0.79825 1.20749 1.22747 1.20133 1.22888 0.93445 1.01877 0.98023 1.21551 0.94538 0.97925 0.82315 0.90935 1.22076 1.01843 0.96368 1.00971 1.83395 0.94934 1.09360 1.62553 0.87593 0.88246 0.86705 0.88452 0.86694 0.87677 0.86890 0.89905 0.91303 0.78976 0.94071 0.90525 0.88863 0.93296 0.89734 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.48 71.23 0.75 0.17 16 2 C -0.02 -0.36 7.53 88.46 0.67 0.31 16 3 N -0.31 -7.97 11.66 -50.85 -0.59 -8.56 16 4 N -0.28 -7.90 11.66 -50.85 -0.59 -8.49 16 5 C -0.04 -1.00 7.16 88.46 0.63 -0.36 16 6 C 0.14 2.53 6.54 71.23 0.47 3.00 16 7 O -0.39 -10.01 9.86 -129.94 -1.28 -11.29 16 8 C 0.05 1.16 5.42 71.24 0.39 1.54 16 9 C 0.52 15.88 7.71 87.66 0.68 16.55 16 10 O -0.57 -21.76 15.39 16.00 0.25 -21.52 16 11 N -0.61 -17.30 3.08 -788.05 -2.43 -19.73 16 12 C 0.08 2.40 6.38 86.86 0.55 2.95 16 13 C 0.17 5.61 3.68 46.39 0.17 5.78 16 14 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 15 N -0.72 -31.94 5.28 -316.36 -1.67 -33.61 16 16 C -0.24 -11.98 9.98 84.03 0.84 -11.14 16 17 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 18 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 19 N -0.97 -55.12 13.06 21.65 0.28 -54.84 16 20 Si 0.97 42.96 29.55 68.60 2.03 44.99 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 24 C -0.12 -3.50 6.12 31.78 0.19 -3.30 16 25 C 0.14 3.85 3.49 45.34 0.16 4.00 16 26 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 27 C -0.15 -4.05 9.07 71.98 0.65 -3.40 16 28 S 0.25 3.81 23.04 -56.49 -1.30 2.51 16 29 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.94 7.85 -2.39 -0.02 1.92 16 35 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 2.20 7.48 -2.39 -0.02 2.18 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.38 18.14 7.71 -92.71 -0.71 17.42 16 39 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.08 2.20 8.00 -2.39 -0.02 2.19 16 41 H 0.09 2.43 7.83 -2.38 -0.02 2.41 16 42 H 0.05 1.48 6.73 -2.39 -0.02 1.47 16 43 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -74.51 384.25 1.61 -72.91 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.31 Total: 24.72 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.61 Total: 12.92 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -5.00 Total: -125.24 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -1.03 Total: -32.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.30 Total: 2.51 kcal Total: -74.51 1.61 -72.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486116956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.698 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds