Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30274 * 126.28371 * 2 1 4 4 N 1.28674 * 109.37972 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.37802 * 359.97438 * 4 3 2 6 6 C 1.50710 * 126.27763 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.46754 * 89.96200 * 6 5 4 8 8 C 1.47436 * 111.00195 * 69.87247 * 7 6 5 9 9 C 1.54324 * 107.23365 * 123.25585 * 8 7 6 10 10 C 1.55137 * 103.01437 * 22.28217 * 9 8 7 11 11 H 1.09003 * 110.98775 * 82.44489 * 10 9 8 12 12 C 1.53001 * 110.98684 * 206.21755 * 10 9 8 13 13 N 1.46503 * 109.47267 * 293.54623 * 12 10 9 14 14 C 1.34777 * 120.00405 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99411 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00120 * 180.02562 * 14 13 12 17 17 S 1.81008 * 109.46953 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99872 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00109 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99652 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99690 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47065 * 89.99953 * 22 20 18 24 24 H 1.48496 * 109.46900 * 210.00468 * 22 20 18 25 25 H 1.48510 * 109.46938 * 329.99808 * 22 20 18 26 26 C 1.47846 * 110.99549 * 190.71563 * 7 6 5 27 27 O 1.34356 * 107.43917 * 0.02562 * 5 4 3 28 28 H 1.08997 * 109.46805 * 269.96075 * 1 2 3 29 29 H 1.08999 * 109.47032 * 29.95446 * 1 2 3 30 30 H 1.08995 * 109.47586 * 149.95585 * 1 2 3 31 31 H 1.08998 * 109.46813 * 209.95321 * 6 5 4 32 32 H 1.08990 * 109.46966 * 329.96118 * 6 5 4 33 33 H 1.09004 * 109.89047 * 242.66143 * 8 7 6 34 34 H 1.09002 * 109.89138 * 3.85266 * 8 7 6 35 35 H 1.09001 * 110.70581 * 140.66709 * 9 8 7 36 36 H 1.09002 * 110.70138 * 263.72847 * 9 8 7 37 37 H 1.08995 * 109.47693 * 53.54873 * 12 10 9 38 38 H 1.09005 * 109.47027 * 173.55118 * 12 10 9 39 39 H 0.97003 * 119.99937 * 0.02562 * 13 12 10 40 40 H 1.08992 * 109.47314 * 300.00215 * 16 14 13 41 41 H 1.09003 * 109.47249 * 60.00840 * 16 14 13 42 42 H 0.96998 * 119.99531 * 180.02562 * 21 20 18 43 43 H 1.08996 * 110.37251 * 332.46412 * 26 7 6 44 44 H 1.09000 * 110.37172 * 94.80758 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6760 -0.0005 5 6 3.5653 -0.6255 -0.0004 6 6 4.8177 -1.4640 -0.0003 7 7 5.2251 -1.7354 1.3848 8 6 4.2816 -2.6584 2.0419 9 6 5.0982 -3.8701 2.5384 10 6 6.5389 -3.3033 2.6380 11 1 6.6836 -2.7673 3.5761 12 6 7.5776 -4.4155 2.4798 13 7 7.4919 -5.3297 3.6214 14 6 8.3166 -6.3930 3.6968 15 8 9.1301 -6.5927 2.8197 16 6 8.2281 -7.3336 4.8708 17 16 9.4559 -8.6502 4.6830 18 6 9.1397 -9.5749 6.1492 19 1 8.3687 -9.2542 6.8340 20 6 9.8815 -10.7154 6.4238 21 7 10.8216 -11.1059 5.5893 22 14 9.5458 -11.6961 7.9779 23 1 8.5197 -12.7322 7.6973 24 1 10.7995 -12.3506 8.4306 25 1 9.0513 -10.7848 9.0411 26 6 6.5771 -2.3318 1.4321 27 8 2.3021 -1.0831 -0.0002 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5145 31 1 4.6241 -2.4061 -0.5133 32 1 5.6144 -0.9270 -0.5148 33 1 3.8044 -2.1616 2.8867 34 1 3.5267 -2.9876 1.3278 35 1 4.7449 -4.1986 3.5158 36 1 5.0516 -4.6872 1.8185 37 1 7.3839 -4.9653 1.5588 38 1 8.5751 -3.9780 2.4388 39 1 6.8410 -5.1701 4.3228 40 1 8.4219 -6.7842 5.7920 41 1 7.2305 -7.7709 4.9116 42 1 11.3397 -11.9032 5.7812 43 1 6.7835 -2.8775 0.5115 44 1 7.3278 -1.5578 1.5920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493177934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = -27.461439 kcal Electronic energy + Delta-G solvation = -25698.120534 eV Core-core repulsion = 21777.346891 eV Total energy + Delta-G solvation = -3920.773643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.29189 -40.87524 -39.99630 -37.25761 -36.35109 -34.58603 -34.50069 -33.00966 -31.33037 -30.16182 -29.65609 -27.71836 -27.31738 -25.49210 -23.98548 -23.41125 -22.18303 -21.46324 -21.43691 -19.80598 -18.61791 -18.20420 -17.78415 -17.63962 -17.04190 -16.87379 -16.52306 -16.31310 -16.21290 -15.80458 -15.58502 -14.99941 -14.67402 -14.43584 -14.40240 -14.12229 -13.98500 -13.74635 -13.58753 -13.48315 -13.32512 -13.18625 -13.15793 -12.94193 -12.88449 -12.62593 -12.51707 -12.17533 -11.99817 -11.92381 -11.71790 -11.65195 -11.13816 -10.95631 -10.61430 -10.26713 -10.09760 -9.52820 -8.65855 -8.34256 -6.12150 0.07022 1.19086 1.28082 1.29478 1.42848 1.48019 1.58233 1.63354 2.25893 2.30300 2.71944 2.92442 3.00044 3.32241 3.35924 3.57941 3.62889 3.72248 3.83196 4.03358 4.12460 4.22605 4.29553 4.33049 4.34253 4.37974 4.40742 4.52805 4.54722 4.55110 4.62859 4.68859 4.71460 4.75930 4.92666 4.97167 5.03991 5.11713 5.26931 5.42430 5.45567 5.74138 5.76965 6.20284 6.51833 7.07271 7.23041 7.26249 8.74900 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031198 B = 0.001546 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.279709 B =18107.683804 C =18704.441937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.171 3.829 3 N -0.333 5.333 4 N -0.308 5.308 5 C 0.174 3.826 6 C 0.146 3.854 7 N -0.536 5.536 8 C 0.040 3.960 9 C -0.133 4.133 10 C -0.096 4.096 11 H 0.101 0.899 12 C 0.133 3.867 13 N -0.711 5.711 14 C 0.534 3.466 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 C 0.056 3.944 27 O -0.231 6.231 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.416 0.584 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.271 0.729 43 H 0.069 0.931 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.777 21.804 -9.591 32.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 N -0.180 5.180 4 N -0.154 5.154 5 C -0.039 4.039 6 C 0.017 3.983 7 N -0.262 5.262 8 C -0.087 4.087 9 C -0.171 4.171 10 C -0.115 4.115 11 H 0.119 0.881 12 C 0.009 3.991 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.445 6.445 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.182 1.182 26 C -0.071 4.071 27 O -0.110 6.110 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.253 0.747 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.946 23.118 -10.856 33.031 hybrid contribution -1.327 -2.218 1.550 3.014 sum -22.273 20.900 -9.306 31.929 Atomic orbital electron populations 1.20719 0.76678 1.07345 1.06902 1.29037 0.99385 0.78815 0.96788 1.74365 0.96450 1.27200 1.19972 1.74312 1.12787 1.10586 1.17681 1.28177 0.85600 0.91336 0.98765 1.20844 0.87762 0.97733 0.91964 1.63538 1.03399 1.45232 1.14009 1.22900 0.94788 0.91839 0.99172 1.22851 0.93861 0.97241 1.03174 1.22414 0.93849 0.94717 1.00536 0.88118 1.21281 0.99435 0.89754 0.88594 1.45697 1.38443 1.25956 1.26365 1.20027 0.80230 0.81481 0.86316 1.90696 1.38186 1.74107 1.41502 1.23377 1.04957 0.99592 1.00220 1.85574 1.46980 1.27048 1.32922 1.23217 1.24217 1.13718 1.08361 0.89886 1.26115 0.93966 0.97709 1.01287 1.70183 1.21749 1.24765 1.38053 0.84962 0.77947 0.78001 0.77121 1.19305 1.20358 1.18215 1.23012 0.89455 0.96832 0.97843 1.84801 1.17651 1.38699 1.69878 0.86464 0.86332 0.86725 0.89038 0.84758 0.90909 0.92124 0.89217 0.90870 0.92023 0.91822 0.74749 0.87274 0.87177 0.92009 0.91225 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 71.24 0.75 0.55 16 2 C 0.17 2.55 8.48 88.34 0.75 3.30 16 3 N -0.33 -7.41 12.22 -165.50 -2.02 -9.43 16 4 N -0.31 -7.22 12.22 -165.50 -2.02 -9.25 16 5 C 0.17 3.06 7.38 88.34 0.65 3.72 16 6 C 0.15 1.69 5.17 85.56 0.44 2.13 16 7 N -0.54 -6.87 5.15 -890.09 -4.58 -11.45 16 8 C 0.04 0.48 6.41 86.65 0.56 1.03 16 9 C -0.13 -1.42 6.11 31.78 0.19 -1.23 16 10 C -0.10 -1.13 3.10 -9.41 -0.03 -1.15 16 11 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 12 C 0.13 2.45 5.12 86.38 0.44 2.89 16 13 N -0.71 -15.80 5.41 -463.06 -2.50 -18.30 16 14 C 0.53 18.61 7.85 87.66 0.69 19.30 16 15 O -0.57 -25.32 15.86 -3.03 -0.05 -25.37 16 16 C -0.13 -4.96 6.16 71.23 0.44 -4.52 16 17 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 18 C -0.55 -30.89 9.50 67.95 0.65 -30.24 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.79 5.49 84.86 0.47 1.26 16 21 N -0.91 -55.56 13.22 21.65 0.29 -55.27 16 22 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 C 0.06 0.60 6.15 86.77 0.53 1.13 16 27 O -0.23 -3.71 10.55 -3.59 -0.04 -3.75 16 28 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.09 0.72 7.96 -2.39 -0.02 0.70 16 32 H 0.13 1.24 8.07 -2.39 -0.02 1.22 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.70 7.03 -2.39 -0.02 0.68 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.86 8.02 -2.39 -0.02 0.84 16 37 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 38 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.42 6.48 8.34 -92.71 -0.77 5.71 16 40 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 41 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.07 0.62 7.71 -2.39 -0.02 0.61 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -84.39 386.29 -3.29 -87.68 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.25 Total: 11.37 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 6.53 Total: -1.84 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -10.85 Total: -103.70 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.09 Total: -29.12 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -84.39 -3.29 -87.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493177934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.219 kcal (2) G-P(sol) polarization free energy of solvation -84.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds