Wall clock time and date at job start Sat Apr 11 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30855 * 125.41573 * 2 1 4 4 C 1.33322 * 109.67976 * 179.74622 * 3 2 1 5 5 C 1.36662 * 107.78775 * 0.38226 * 4 3 2 6 6 C 1.46766 * 126.84145 * 179.89274 * 5 4 3 7 7 O 1.21685 * 119.99597 * 185.03321 * 6 5 4 8 8 N 1.34777 * 120.00306 * 5.03717 * 6 5 4 9 9 C 1.46490 * 120.00104 * 174.54025 * 8 6 5 10 10 H 1.09003 * 109.47122 * 324.99574 * 9 8 6 11 11 C 1.53002 * 109.47565 * 84.99693 * 9 8 6 12 12 C 1.53009 * 109.47064 * 204.99935 * 9 8 6 13 13 N 1.46495 * 109.46864 * 54.99920 * 12 9 8 14 14 C 1.34777 * 119.99734 * 179.97438 * 13 12 9 15 15 O 1.21279 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99966 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47090 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99989 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00092 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99810 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00438 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46831 * 60.00329 * 22 20 18 24 24 H 1.48494 * 109.47233 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47171 * 300.00623 * 22 20 18 26 26 N 1.34490 * 125.41661 * 179.97438 * 2 1 3 27 27 C 1.46505 * 126.47601 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46538 * 270.01473 * 1 2 3 29 29 H 1.08994 * 109.47537 * 30.01606 * 1 2 3 30 30 H 1.08999 * 109.47188 * 150.01830 * 1 2 3 31 31 H 1.08004 * 126.10300 * 180.28249 * 4 3 2 32 32 H 0.97008 * 119.99689 * 354.53733 * 8 6 5 33 33 H 1.08993 * 109.47073 * 300.00207 * 11 9 8 34 34 H 1.09003 * 109.46998 * 59.99805 * 11 9 8 35 35 H 1.08999 * 109.47224 * 179.97438 * 11 9 8 36 36 H 1.09007 * 109.46940 * 174.99846 * 12 9 8 37 37 H 1.09000 * 109.46662 * 294.99620 * 12 9 8 38 38 H 0.96995 * 120.00631 * 0.02562 * 13 12 9 39 39 H 1.08998 * 109.47340 * 300.00180 * 16 14 13 40 40 H 1.08996 * 109.47043 * 60.00348 * 16 14 13 41 41 H 0.97000 * 120.00038 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.47157 * 270.82887 * 27 26 2 43 43 H 1.09004 * 109.46740 * 30.83254 * 27 26 2 44 44 H 1.09003 * 109.46847 * 150.82529 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 0.0056 5 6 3.5975 -0.6609 0.0006 6 6 4.8029 -1.4982 0.0017 7 8 4.7039 -2.7071 -0.0957 8 7 6.0194 -0.9283 0.1106 9 6 7.2135 -1.7681 0.2322 10 1 6.9731 -2.6600 0.8109 11 6 7.6925 -2.1786 -1.1618 12 6 8.3192 -0.9830 0.9408 13 7 7.8197 -0.4881 2.2260 14 6 8.6255 0.2349 3.0288 15 8 9.7638 0.4762 2.6870 16 6 8.1116 0.7445 4.3506 17 16 9.4196 1.6731 5.1890 18 6 8.5695 2.1384 6.6605 19 1 7.5433 1.8370 6.8096 20 6 9.2193 2.8914 7.6287 21 7 10.4703 3.2585 7.4473 22 14 8.3178 3.3854 9.1885 23 1 7.8817 2.1660 9.9153 24 1 9.2255 4.1801 10.0543 25 1 7.1294 4.2029 8.8357 26 7 2.2864 -1.0960 0.0005 27 6 1.8311 -2.4885 0.0016 28 1 -0.3632 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5140 30 1 -0.3633 -0.8901 -0.5135 31 1 4.3978 1.3722 0.0112 32 1 6.1041 0.0380 0.1085 33 1 6.9049 -2.7378 -1.6665 34 1 7.9329 -1.2867 -1.7405 35 1 8.5812 -2.8030 -1.0713 36 1 9.1760 -1.6350 1.1107 37 1 8.6215 -0.1401 0.3194 38 1 6.9095 -0.6814 2.4996 39 1 7.2552 1.3970 4.1804 40 1 7.8085 -0.0982 4.9719 41 1 10.9242 3.7851 8.1238 42 1 1.7044 -2.8285 1.0295 43 1 0.8792 -2.5599 -0.5247 44 1 2.5709 -3.1131 -0.4992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494603702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:24 Heat of formation + Delta-G solvation = -18.836898 kcal Electronic energy + Delta-G solvation = -26431.776778 eV Core-core repulsion = 22511.377123 eV Total energy + Delta-G solvation = -3920.399655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.64965 -40.08219 -39.05150 -36.58611 -34.57302 -33.70240 -32.57412 -32.42929 -31.32523 -29.42825 -28.07972 -27.15374 -26.03860 -25.38460 -23.59422 -21.81976 -20.78806 -20.40328 -20.17306 -18.35736 -17.76054 -16.90515 -16.55172 -16.51195 -16.27858 -15.79669 -15.17391 -15.01072 -14.80469 -14.69599 -14.23876 -14.05028 -13.76302 -13.66614 -13.49000 -13.31897 -13.11234 -12.99432 -12.93679 -12.78343 -12.75141 -12.56670 -12.26720 -11.83192 -11.35209 -11.04990 -11.03701 -10.77242 -10.75122 -10.20457 -10.09241 -9.83622 -9.63390 -9.44925 -9.07317 -8.98860 -8.83068 -8.25527 -6.50855 -6.21855 -3.92701 0.90731 2.01796 2.41680 2.83730 2.97672 3.01132 3.05334 3.23819 3.27593 3.30858 3.67496 3.92784 4.19626 4.20363 4.32278 4.37462 4.53358 4.72136 4.76283 4.88198 4.91153 5.01534 5.05646 5.11505 5.13250 5.13301 5.29953 5.35512 5.37836 5.49147 5.60294 5.71440 5.76623 5.86478 5.87476 6.03826 6.12431 6.13462 6.50083 6.62174 7.02608 7.53210 7.58856 7.61303 7.76043 8.34843 8.54238 9.23463 10.85484 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.002489 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.085978 B =11247.465709 C =13264.519697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.229 3.771 3 N -0.492 5.492 4 C 0.046 3.954 5 C -0.095 4.095 6 C 0.600 3.400 7 O -0.545 6.545 8 N -0.714 5.714 9 C 0.136 3.864 10 H 0.097 0.903 11 C -0.161 4.161 12 C 0.113 3.887 13 N -0.741 5.741 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.424 5.424 27 C 0.064 3.936 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.180 0.820 32 H 0.406 0.594 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 -12.052 -19.166 29.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 N -0.210 5.210 4 C -0.109 4.109 5 C -0.211 4.211 6 C 0.387 3.613 7 O -0.424 6.424 8 N -0.366 5.366 9 C 0.032 3.968 10 H 0.115 0.885 11 C -0.220 4.220 12 C -0.012 4.012 13 N -0.396 5.396 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.105 5.105 27 C -0.078 4.078 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.197 0.803 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.036 -11.825 -19.718 28.616 hybrid contribution -1.947 -0.417 1.564 2.532 sum -18.984 -12.243 -18.155 28.980 Atomic orbital electron populations 1.20300 0.84281 1.04392 1.04099 1.23497 0.96014 0.81103 1.02662 1.70148 1.02132 1.28012 1.20751 1.22698 0.95347 0.91191 1.01643 1.20646 0.85306 0.94871 1.20280 1.16728 0.82048 0.86504 0.75975 1.90785 1.86827 1.14190 1.50575 1.45757 1.05232 1.10897 1.74711 1.21294 0.83592 0.94289 0.97619 0.88539 1.22114 1.02084 1.02232 0.95565 1.21634 0.95941 0.98860 0.84789 1.46005 1.16718 1.56971 1.19911 1.20318 0.85433 0.77056 0.85280 1.90711 1.18222 1.55941 1.74048 1.23533 1.06414 1.04310 0.96216 1.85377 1.13874 1.65116 1.18850 1.22823 1.01055 1.39870 1.04700 0.90989 1.24989 0.95002 0.95094 0.98454 1.70006 1.10148 1.35258 1.34889 0.86227 0.79262 0.78656 0.81382 1.19954 1.20800 1.19906 1.45073 1.05083 1.08354 1.51962 1.22315 1.02267 0.78831 1.04373 0.89526 0.88635 0.90541 0.80300 0.75812 0.91487 0.91852 0.90901 0.89718 0.90689 0.76733 0.89180 0.89271 0.92115 0.90063 0.89474 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.18 36.01 0.37 0.01 16 2 C 0.23 2.09 7.88 -155.62 -1.23 0.87 16 3 N -0.49 -5.58 11.20 -10.58 -0.12 -5.70 16 4 C 0.05 0.47 11.37 -17.47 -0.20 0.27 16 5 C -0.09 -0.95 6.91 -82.14 -0.57 -1.52 16 6 C 0.60 6.04 7.74 -12.81 -0.10 5.95 16 7 O -0.55 -6.69 14.50 5.20 0.08 -6.61 16 8 N -0.71 -5.72 4.50 -55.09 -0.25 -5.97 16 9 C 0.14 1.11 2.69 -67.93 -0.18 0.93 16 10 H 0.10 0.89 7.66 -51.93 -0.40 0.49 16 11 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 12 C 0.11 1.12 5.23 -4.04 -0.02 1.10 16 13 N -0.74 -9.08 5.39 -60.29 -0.32 -9.41 16 14 C 0.53 9.49 7.85 -10.99 -0.09 9.40 16 15 O -0.52 -11.22 15.86 5.56 0.09 -11.13 16 16 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 17 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 18 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 N -0.42 -3.84 3.17 -117.27 -0.37 -4.21 16 27 C 0.06 0.40 10.54 59.85 0.63 1.03 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.21 7.05 -51.93 -0.37 -0.16 16 31 H 0.18 1.34 7.46 -52.48 -0.39 0.95 16 32 H 0.41 2.75 7.55 -40.82 -0.31 2.44 16 33 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.40 4.16 8.14 -40.82 -0.33 3.83 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.29 7.04 -51.93 -0.37 -0.08 16 44 H 0.11 0.81 6.35 -51.93 -0.33 0.48 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -37.76 389.04 -8.41 -46.17 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.26 Total: 2.34 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.61 Total: 1.45 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.33 Total: -50.68 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.16 Total: -17.74 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.76 -8.41 -46.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494603702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.331 kcal (2) G-P(sol) polarization free energy of solvation -37.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds