Wall clock time and date at job start Sat Apr 11 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30509 * 125.64382 * 2 1 4 4 C 1.34123 * 109.25089 * 180.02562 * 3 2 1 5 5 C 1.34667 * 108.02366 * 359.72708 * 4 3 2 6 6 N 1.35037 * 125.65241 * 180.02562 * 2 1 3 7 7 C 1.46492 * 126.39851 * 359.96546 * 6 2 1 8 8 C 1.50703 * 109.47441 * 84.99881 * 7 6 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53004 * 109.47065 * 204.72115 * 11 10 8 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 11 10 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 11 17 17 O 1.21280 * 119.99839 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00028 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.47017 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99911 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99957 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00091 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00149 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99915 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47018 * 90.00789 * 24 22 20 26 26 H 1.48504 * 109.46946 * 210.00829 * 24 22 20 27 27 H 1.48499 * 109.46986 * 330.00319 * 24 22 20 28 28 H 1.08999 * 109.47298 * 269.95591 * 1 2 3 29 29 H 1.08999 * 109.47456 * 29.95706 * 1 2 3 30 30 H 1.08997 * 109.47068 * 149.96201 * 1 2 3 31 31 H 1.08004 * 125.99106 * 180.02562 * 4 3 2 32 32 H 1.08004 * 126.59431 * 180.28516 * 5 4 3 33 33 H 1.08998 * 109.47276 * 324.99797 * 7 6 2 34 34 H 1.09002 * 109.47526 * 205.00108 * 7 6 2 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47054 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 38 38 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 39 39 H 1.08997 * 109.47038 * 174.99692 * 14 11 10 40 40 H 1.08999 * 109.47047 * 295.00318 * 14 11 10 41 41 H 0.96997 * 120.00059 * 359.97438 * 15 14 11 42 42 H 1.08992 * 109.47087 * 299.99808 * 18 16 15 43 43 H 1.08999 * 109.46766 * 59.99867 * 18 16 15 44 44 H 0.97003 * 120.00205 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0606 0.0000 4 6 3.5542 0.6821 -0.0006 5 6 3.5925 -0.6640 0.0052 6 7 2.2941 -1.0973 -0.0005 7 6 1.8426 -2.4909 -0.0004 8 6 1.5693 -2.9306 -1.4157 9 8 1.7348 -2.1558 -2.3340 10 7 1.1399 -4.1843 -1.6609 11 6 0.8800 -4.6135 -3.0373 12 1 0.4758 -3.7777 -3.6083 13 6 2.1859 -5.0857 -3.6795 14 6 -0.1300 -5.7628 -3.0311 15 7 -1.3366 -5.3486 -2.3106 16 6 -2.3687 -6.2049 -2.1766 17 8 -2.2989 -7.3180 -2.6529 18 6 -3.6096 -5.7790 -1.4350 19 16 -4.8045 -7.1386 -1.4278 20 6 -6.1173 -6.3872 -0.5240 21 1 -6.0153 -5.3734 -0.1658 22 6 -7.2820 -7.0986 -0.2713 23 7 -8.2628 -6.5372 0.4034 24 14 -7.4580 -8.8524 -0.8901 25 1 -6.9541 -9.7942 0.1414 26 1 -8.8889 -9.1389 -1.1653 27 1 -6.6711 -9.0181 -2.1385 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3634 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5144 31 1 4.4097 1.3413 -0.0003 32 1 4.4777 -1.2830 0.0106 33 1 0.9301 -2.5772 0.5895 34 1 2.6169 -3.1237 0.4335 35 1 1.0071 -4.8038 -0.9264 36 1 1.9924 -5.4055 -4.7034 37 1 2.9054 -4.2670 -3.6840 38 1 2.5901 -5.9216 -3.1085 39 1 -0.3908 -6.0229 -4.0569 40 1 0.3088 -6.6295 -2.5367 41 1 -1.3923 -4.4585 -1.9294 42 1 -3.3485 -5.5188 -0.4093 43 1 -4.0487 -4.9124 -1.9292 44 1 -9.0770 -7.0343 0.5796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494603841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:26 Heat of formation + Delta-G solvation = -12.150975 kcal Electronic energy + Delta-G solvation = -26387.951646 eV Core-core repulsion = 22467.841915 eV Total energy + Delta-G solvation = -3920.109731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.45826 -40.43314 -39.33367 -36.81092 -34.40964 -33.95160 -32.50110 -32.01081 -31.80405 -29.67539 -28.30365 -26.98761 -26.18356 -25.60755 -22.61865 -21.66088 -21.20280 -20.61874 -20.07844 -18.34369 -17.88074 -17.62010 -16.70125 -16.52237 -16.13938 -15.96530 -15.42621 -15.17420 -15.01791 -14.66743 -14.25921 -14.08241 -14.04680 -13.71159 -13.42989 -13.27359 -13.24338 -13.11602 -12.91048 -12.85842 -12.69846 -12.62661 -12.45544 -12.05870 -11.51528 -11.32925 -11.06649 -10.80726 -10.68832 -10.23392 -9.93249 -9.85393 -9.77797 -9.65842 -9.21085 -9.05998 -8.59629 -8.58507 -6.99830 -6.34883 -4.07637 1.60395 1.92628 2.17461 2.61473 2.71414 2.82017 2.92842 3.19982 3.27885 3.44824 3.55137 3.98737 4.06153 4.19650 4.22334 4.27056 4.38668 4.44658 4.59339 4.65932 4.76886 4.97976 5.04112 5.12282 5.14270 5.16242 5.19152 5.23643 5.40977 5.46491 5.52266 5.62278 5.64445 5.71144 5.86694 5.89855 5.93979 6.29502 6.47334 6.73055 6.89501 7.39641 7.54347 7.84987 7.87951 8.31294 8.35290 9.11032 10.74244 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.002244 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.377119 B =12475.454951 C =14088.525751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.222 3.778 3 N -0.492 5.492 4 C -0.025 4.025 5 C -0.055 4.055 6 N -0.444 5.444 7 C 0.083 3.917 8 C 0.497 3.503 9 O -0.514 6.514 10 N -0.723 5.723 11 C 0.133 3.867 12 H 0.097 0.903 13 C -0.161 4.161 14 C 0.113 3.887 15 N -0.739 5.739 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.523 4.523 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.405 0.595 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.062 7.594 -1.060 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 N -0.211 5.211 4 C -0.172 4.172 5 C -0.186 4.186 6 N -0.128 5.128 7 C -0.044 4.044 8 C 0.281 3.719 9 O -0.388 6.388 10 N -0.377 5.377 11 C 0.028 3.972 12 H 0.115 0.885 13 C -0.220 4.220 14 C -0.011 4.011 15 N -0.394 5.394 16 C 0.317 3.683 17 O -0.390 6.390 18 C -0.275 4.275 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.515 5.515 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.187 0.813 32 H 0.189 0.811 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.240 0.760 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 24.799 6.963 -2.471 25.876 hybrid contribution -0.020 -0.240 0.961 0.991 sum 24.778 6.723 -1.510 25.719 Atomic orbital electron populations 1.20214 0.84895 1.04338 1.03495 1.23313 0.95690 0.81041 1.03951 1.70274 1.02313 1.28016 1.20470 1.22245 0.94814 0.92693 1.07422 1.22610 0.86592 0.96989 1.12417 1.44820 1.06829 1.05688 1.55424 1.21676 1.04582 0.82227 0.95888 1.20761 0.77650 0.82282 0.91249 1.90822 1.49935 1.52552 1.45532 1.46075 1.68567 1.13264 1.09796 1.21290 0.95645 0.97633 0.82619 0.88455 1.22103 0.96577 1.01901 1.01388 1.21630 0.84427 0.96191 0.98882 1.45957 1.16470 1.17878 1.59107 1.20316 0.83685 0.84732 0.79558 1.90716 1.80830 1.20280 1.47209 1.23276 0.96377 1.05042 1.02838 1.84813 1.13400 1.18902 1.74327 1.22296 1.01088 1.03817 1.39816 0.89366 1.24718 0.94418 0.98515 0.93665 1.69933 1.05804 1.37708 1.38083 0.86737 0.78825 0.84448 0.81843 1.19202 1.19889 1.15948 0.89902 0.88900 0.91081 0.81333 0.81055 0.85710 0.85803 0.75950 0.90833 0.91628 0.91885 0.89741 0.90720 0.76657 0.88523 0.88420 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.04 36.00 0.36 -0.19 16 2 C 0.22 2.36 7.89 -155.42 -1.23 1.13 16 3 N -0.49 -6.24 11.25 -10.82 -0.12 -6.37 16 4 C -0.02 -0.25 11.87 -17.82 -0.21 -0.47 16 5 C -0.05 -0.47 11.58 -16.56 -0.19 -0.66 16 6 N -0.44 -3.79 2.24 -115.19 -0.26 -4.05 16 7 C 0.08 0.40 6.16 -5.20 -0.03 0.36 16 8 C 0.50 3.49 7.86 -10.98 -0.09 3.40 16 9 O -0.51 -6.06 16.09 5.55 0.09 -5.97 16 10 N -0.72 -3.66 4.52 -53.81 -0.24 -3.91 16 11 C 0.13 0.86 2.73 -67.93 -0.19 0.68 16 12 H 0.10 0.80 7.58 -51.93 -0.39 0.41 16 13 C -0.16 -0.96 9.48 37.16 0.35 -0.60 16 14 C 0.11 0.93 5.23 -4.04 -0.02 0.91 16 15 N -0.74 -7.48 5.39 -60.29 -0.32 -7.80 16 16 C 0.53 8.28 7.85 -10.99 -0.09 8.20 16 17 O -0.52 -10.12 15.86 5.56 0.09 -10.03 16 18 C -0.12 -2.20 6.16 36.01 0.22 -1.98 16 19 S -0.14 -3.40 18.55 -107.50 -1.99 -5.39 16 20 C -0.52 -14.53 10.04 30.94 0.31 -14.22 16 21 H 0.09 2.56 8.03 -52.49 -0.42 2.13 16 22 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 23 N -0.88 -25.92 13.97 55.49 0.78 -25.15 16 24 Si 0.86 21.19 27.74 -169.99 -4.72 16.48 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.48 7.83 -51.93 -0.41 0.08 16 31 H 0.17 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.13 0.32 7.92 -51.93 -0.41 -0.09 16 34 H 0.12 0.23 8.13 -51.93 -0.42 -0.19 16 35 H 0.41 1.23 8.60 -40.82 -0.35 0.88 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.40 3.18 8.14 -40.82 -0.33 2.85 16 42 H 0.10 1.54 8.14 -51.92 -0.42 1.11 16 43 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -38.77 392.87 -8.22 -46.99 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.54 Total: 0.09 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -0.89 Total: -0.81 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.17 Total: -47.27 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.18 Total: -16.00 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.72 Total: 16.48 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.77 -8.22 -46.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494603841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.834 kcal (2) G-P(sol) polarization free energy of solvation -38.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds