Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31134 * 126.54812 * 2 1 4 4 C 1.34495 * 105.61544 * 180.11903 * 3 2 1 5 5 C 1.50698 * 126.28965 * 179.90391 * 4 3 2 6 6 H 1.08996 * 109.47034 * 14.71817 * 5 4 3 7 7 C 1.53002 * 109.47395 * 254.71494 * 5 4 3 8 8 N 1.46906 * 109.46953 * 134.71580 * 5 4 3 9 9 C 1.47964 * 111.00020 * 82.11531 * 8 5 4 10 10 C 1.53933 * 86.18210 * 137.57797 * 9 8 5 11 11 C 1.47959 * 110.99885 * 181.47100 * 8 5 4 12 12 H 1.09005 * 113.86163 * 336.74961 * 11 8 5 13 13 C 1.53006 * 113.75921 * 108.10125 * 11 8 5 14 14 N 1.46503 * 109.46789 * 301.06539 * 13 11 8 15 15 C 1.34775 * 119.99956 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99537 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00270 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47037 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99875 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99892 * 359.97438 * 19 18 17 21 21 C 1.38790 * 119.99939 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00504 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00180 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47390 * 89.99461 * 23 21 19 25 25 H 1.48498 * 109.47332 * 209.99649 * 23 21 19 26 26 H 1.48507 * 109.46540 * 329.99560 * 23 21 19 27 27 N 1.29954 * 107.42392 * 359.64500 * 4 3 2 28 28 O 1.21304 * 110.24715 * 0.22207 * 27 4 3 29 29 H 1.08999 * 109.47110 * 180.24635 * 1 2 3 30 30 H 1.08993 * 109.47398 * 300.24854 * 1 2 3 31 31 H 1.09006 * 109.47265 * 60.25037 * 1 2 3 32 32 H 1.08999 * 109.46822 * 69.94902 * 7 5 4 33 33 H 1.08991 * 109.47432 * 189.95106 * 7 5 4 34 34 H 1.09002 * 109.47270 * 309.95338 * 7 5 4 35 35 H 1.09003 * 113.75710 * 23.26123 * 9 8 5 36 36 H 1.09005 * 113.75702 * 251.90352 * 9 8 5 37 37 H 1.08994 * 113.73489 * 221.91710 * 10 9 8 38 38 H 1.09003 * 113.82650 * 90.65072 * 10 9 8 39 39 H 1.09000 * 109.46844 * 61.06538 * 13 11 8 40 40 H 1.08995 * 109.47025 * 181.06732 * 13 11 8 41 41 H 0.97005 * 119.99941 * 359.97438 * 14 13 11 42 42 H 1.09000 * 109.47258 * 299.99998 * 17 15 14 43 43 H 1.09004 * 109.47197 * 60.00305 * 17 15 14 44 44 H 0.96993 * 120.00737 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5730 -0.0027 5 6 4.8111 1.3888 -0.0058 6 1 4.5790 2.4212 0.2554 7 6 5.4427 1.3448 -1.3987 8 7 5.7526 0.8349 0.9764 9 6 6.4906 -0.3170 0.4126 10 6 7.7379 0.2849 1.0846 11 6 6.9974 1.6331 1.0265 12 1 7.1928 2.2027 0.1178 13 6 7.1416 2.4710 2.2986 14 7 6.0062 3.3901 2.4092 15 6 5.9202 4.2316 3.4585 16 8 6.7830 4.2282 4.3108 17 6 4.7519 5.1767 3.5727 18 16 4.9227 6.1680 5.0775 19 6 3.4665 7.1533 4.9617 20 1 2.7946 7.0276 4.1256 21 6 3.1835 8.0916 5.9444 22 7 4.0027 8.2452 6.9632 23 14 1.6394 9.1357 5.8220 24 1 0.5187 8.4446 6.5088 25 1 1.8791 10.4516 6.4672 26 1 1.2928 9.3410 4.3927 27 7 3.4645 -0.7241 0.0035 28 8 2.3029 -1.0735 0.0052 29 1 -0.3633 -1.0276 0.0044 30 1 -0.3634 0.5176 0.8877 31 1 -0.3634 0.5100 -0.8923 32 1 4.8251 1.9113 -2.0957 33 1 6.4403 1.7818 -1.3593 34 1 5.5123 0.3098 -1.7335 35 1 6.5362 -0.3187 -0.6765 36 1 6.1883 -1.2782 0.8282 37 1 8.6321 0.2483 0.4625 38 1 7.9102 -0.0777 2.0980 39 1 7.1621 1.8125 3.1669 40 1 8.0687 3.0425 2.2540 41 1 5.3163 3.3931 1.7273 42 1 4.7312 5.8354 2.7045 43 1 3.8250 4.6049 3.6171 44 1 3.8048 8.9007 7.6502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498926978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 46.619139 kcal Electronic energy + Delta-G solvation = -27018.233767 eV Core-core repulsion = 23100.672499 eV Total energy + Delta-G solvation = -3917.561268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.60517 -41.83073 -40.37120 -37.15786 -35.76434 -34.96170 -34.59249 -33.03649 -31.49756 -29.69541 -28.86823 -28.51083 -27.63891 -25.91193 -24.54595 -24.02142 -21.86664 -21.80045 -20.25344 -19.71984 -19.20048 -18.52442 -18.00139 -17.67308 -17.32057 -16.88641 -16.63761 -16.30764 -15.88944 -15.65156 -15.51681 -15.27752 -14.70319 -14.50206 -14.40648 -14.20476 -14.11507 -13.99155 -13.54529 -13.22611 -13.17827 -13.03051 -12.89594 -12.87291 -12.64587 -12.48862 -12.39593 -12.16881 -12.07765 -11.86796 -11.83538 -11.70512 -11.14993 -10.97516 -10.86550 -10.30282 -10.12981 -9.84877 -8.68109 -8.35233 -6.13876 0.17313 1.16543 1.25375 1.42250 1.45626 1.56752 1.59021 1.93179 2.17889 2.26879 2.44376 2.83991 2.98689 3.09230 3.30256 3.48137 3.63269 3.70915 3.89108 3.92080 4.01120 4.11189 4.18784 4.24355 4.27505 4.42267 4.46207 4.50020 4.61496 4.62131 4.63733 4.74850 4.84283 4.85274 4.96151 4.97800 5.02290 5.11666 5.19928 5.23050 5.40817 5.43776 5.88536 6.19131 6.42511 7.05698 7.17283 7.19583 8.74145 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.002830 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.688296 B = 9891.337049 C =12066.840070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.186 3.814 3 N -0.514 5.514 4 C 0.178 3.822 5 C 0.133 3.867 6 H 0.104 0.896 7 C -0.176 4.176 8 N -0.489 5.489 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.025 3.975 12 H 0.119 0.881 13 C 0.140 3.860 14 N -0.709 5.709 15 C 0.533 3.467 16 O -0.564 6.564 17 C -0.130 4.130 18 S -0.146 6.146 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.258 1.258 27 N -0.390 5.390 28 O 0.066 5.934 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.406 0.594 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -20.691 -23.579 31.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.033 4.033 3 N -0.249 5.249 4 C -0.095 4.095 5 C 0.023 3.977 6 H 0.122 0.878 7 C -0.235 4.235 8 N -0.213 5.213 9 C -0.127 4.127 10 C -0.161 4.161 11 C -0.084 4.084 12 H 0.136 0.864 13 C 0.016 3.984 14 N -0.362 5.362 15 C 0.319 3.681 16 O -0.442 6.442 17 C -0.281 4.281 18 S 0.081 5.919 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.182 1.182 27 N -0.099 5.099 28 O 0.009 5.991 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.242 0.758 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.511 -20.804 -21.433 29.874 hybrid contribution -1.914 0.796 -1.419 2.512 sum -2.424 -20.008 -22.852 30.470 Atomic orbital electron populations 1.20733 0.76819 1.07615 1.06767 1.29763 1.00396 0.79748 0.93441 1.71886 1.00622 1.30221 1.22180 1.25757 0.95234 0.88401 1.00137 1.20456 0.86389 0.96496 0.94410 0.87844 1.22479 1.02821 1.03553 0.94643 1.68745 1.08395 1.05921 1.38227 1.24098 0.92828 0.95306 1.00487 1.23298 0.97752 0.92214 1.02795 1.23921 0.90596 0.95875 0.98006 0.86384 1.21383 0.88842 0.90695 0.97519 1.45708 1.27224 1.38180 1.25095 1.20030 0.86166 0.80603 0.81321 1.90682 1.42084 1.69975 1.41456 1.23361 0.99954 1.00640 1.04139 1.85525 1.34076 1.44755 1.27543 1.23203 1.09323 1.24339 1.12759 0.90079 1.26136 1.01292 0.97848 0.93796 1.70179 1.38309 1.34790 1.11466 0.84946 0.76835 0.76991 0.79158 1.19283 1.20104 1.18161 1.74547 0.97857 1.15777 1.21737 1.85266 1.11492 1.36296 1.66037 0.85980 0.87123 0.86158 0.90740 0.88412 0.91109 0.88196 0.90474 0.87540 0.89437 0.92690 0.90464 0.75751 0.87261 0.88118 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.19 3.18 8.51 88.38 0.75 3.93 16 3 N -0.51 -11.77 11.55 -303.18 -3.50 -15.27 16 4 C 0.18 4.05 6.99 138.46 0.97 5.01 16 5 C 0.13 2.42 2.84 44.17 0.13 2.55 16 6 H 0.10 1.94 6.40 -2.39 -0.02 1.93 16 7 C -0.18 -2.12 7.84 71.98 0.56 -1.56 16 8 N -0.49 -9.20 5.86 -862.92 -5.06 -14.26 16 9 C 0.00 0.01 7.03 86.40 0.61 0.62 16 10 C -0.12 -1.51 7.84 31.24 0.25 -1.26 16 11 C 0.02 0.38 3.18 45.02 0.14 0.52 16 12 H 0.12 1.25 5.94 -2.38 -0.01 1.24 16 13 C 0.14 3.26 5.80 86.38 0.50 3.76 16 14 N -0.71 -19.95 5.50 -463.06 -2.55 -22.50 16 15 C 0.53 21.06 7.85 87.66 0.69 21.74 16 16 O -0.56 -27.23 15.86 -3.03 -0.05 -27.27 16 17 C -0.13 -5.50 6.16 71.23 0.44 -5.06 16 18 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 19 C -0.55 -32.13 9.50 67.95 0.65 -31.49 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -56.76 13.22 21.65 0.29 -56.48 16 23 Si 1.00 44.20 29.55 68.60 2.03 46.23 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 N -0.39 -8.99 11.54 -60.29 -0.70 -9.69 16 28 O 0.07 1.33 11.31 74.87 0.85 2.18 16 29 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.78 5.90 -2.39 -0.01 0.77 16 34 H 0.07 0.88 6.36 -2.39 -0.02 0.86 16 35 H 0.10 1.15 5.00 -2.39 -0.01 1.14 16 36 H 0.08 1.37 8.14 -2.38 -0.02 1.36 16 37 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.28 7.94 -2.39 -0.02 1.26 16 39 H 0.05 1.51 7.91 -2.39 -0.02 1.50 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.41 9.58 6.51 -92.70 -0.60 8.97 16 42 H 0.11 4.15 8.14 -2.40 -0.02 4.13 16 43 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 44 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -84.55 377.18 -2.52 -87.06 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.44 Total: 19.10 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.89 Total: 0.44 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -11.51 Total: -118.19 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.80 Total: -25.09 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -84.55 -2.52 -87.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498926978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.682 kcal (2) G-P(sol) polarization free energy of solvation -84.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds