Wall clock time and date at job start Sat Apr 11 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.50701 * 109.47355 * 180.02562 * 9 7 6 11 11 N 1.30499 * 125.64969 * 304.69240 * 10 9 7 12 12 C 1.34128 * 109.25402 * 179.89461 * 11 10 9 13 13 C 1.34670 * 108.01863 * 0.36987 * 12 11 10 14 14 N 1.35041 * 125.64611 * 125.00003 * 10 9 7 15 15 H 0.97004 * 126.40053 * 359.97438 * 14 10 9 16 16 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 17 17 C 1.34782 * 119.99726 * 274.99704 * 16 3 2 18 18 O 1.21278 * 120.00302 * 0.02562 * 17 16 3 19 19 C 1.50704 * 119.99703 * 179.97438 * 17 16 3 20 20 S 1.80999 * 109.46986 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99763 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00242 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99547 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00072 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99596 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47272 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.46937 * 120.00090 * 25 23 21 28 28 H 1.48501 * 109.47099 * 239.99914 * 25 23 21 29 29 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 30 30 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 32 32 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 34 34 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 35 35 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 1.07998 * 125.99008 * 180.11995 * 12 11 10 40 40 H 1.08002 * 126.58946 * 179.82041 * 13 12 11 41 41 H 0.97000 * 120.00390 * 95.00648 * 16 3 2 42 42 H 1.09000 * 109.47086 * 300.00860 * 19 17 16 43 43 H 1.09006 * 109.46761 * 60.00688 * 19 17 16 44 44 H 0.97002 * 119.99419 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 6 7.4014 4.4748 -0.0701 11 7 8.2228 3.7721 0.6610 12 6 9.4828 4.0226 0.2755 13 6 9.4410 4.9204 -0.7273 14 7 8.1208 5.2076 -0.9470 15 1 7.7679 5.8228 -1.6088 16 7 1.6524 2.0974 1.2519 17 6 0.4350 2.6644 1.3669 18 8 -0.3397 2.6320 0.4344 19 6 0.0361 3.3376 2.6549 20 16 -1.6428 3.9952 2.4970 21 6 -1.8445 4.7062 4.0966 22 1 -1.0441 4.6460 4.8191 23 6 -3.0321 5.3438 4.4278 24 7 -4.0078 5.4167 3.5473 25 14 -3.2462 6.0970 6.1238 26 1 -2.0126 5.8794 6.9214 27 1 -3.4991 7.5542 5.9899 28 1 -4.3973 5.4557 6.8086 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1316 37 1 5.4717 5.0895 -0.7424 38 1 5.6107 4.8774 1.0193 39 1 10.3748 3.5843 0.6982 40 1 10.2866 5.3339 -1.2570 41 1 2.2718 2.1232 1.9979 42 1 0.0671 2.6128 3.4685 43 1 0.7275 4.1529 2.8680 44 1 -4.8376 5.8626 3.7788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499309119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:10 Heat of formation + Delta-G solvation = -51.496948 kcal Electronic energy + Delta-G solvation = -26244.738925 eV Core-core repulsion = 22322.923024 eV Total energy + Delta-G solvation = -3921.815901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.94673 -41.14992 -40.30874 -37.53134 -34.92985 -34.56150 -33.58178 -33.42208 -33.01632 -30.74315 -29.54260 -27.99618 -27.60410 -24.45679 -22.52687 -22.48410 -22.08463 -21.53001 -21.05324 -19.81717 -18.94312 -18.20863 -17.90569 -17.31623 -16.87763 -16.85606 -16.56901 -16.43358 -15.95372 -15.64980 -15.09929 -14.89515 -14.76727 -14.62390 -14.57792 -14.42038 -14.25910 -13.86841 -13.85774 -13.48349 -13.13193 -13.12688 -12.92010 -12.82771 -12.60744 -12.45552 -12.12200 -11.75852 -11.66573 -11.14017 -10.99723 -10.97088 -10.85337 -10.81087 -10.22382 -10.10803 -10.01715 -9.32720 -8.61356 -8.33227 -6.09054 1.10367 1.30073 1.41627 1.49148 1.59753 1.66945 1.70858 1.94153 2.26172 2.26914 2.33319 2.53504 3.01218 3.35523 3.38952 3.58971 3.93218 4.02504 4.05091 4.07504 4.17064 4.36775 4.39708 4.43833 4.46567 4.55346 4.59057 4.62344 4.70466 4.80130 4.87126 4.96350 5.07923 5.16455 5.20585 5.40428 5.44613 5.50814 5.57719 5.84502 6.21972 6.47337 6.55213 6.59415 7.09185 7.22313 7.26537 7.32938 8.75757 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011438 B = 0.002275 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.385277 B =12306.113228 C =14241.745954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.143 3.857 4 H 0.084 0.916 5 C 0.124 3.876 6 N -0.720 5.720 7 C 0.518 3.482 8 O -0.564 6.564 9 C -0.053 4.053 10 C 0.200 3.800 11 N -0.514 5.514 12 C -0.069 4.069 13 C -0.037 4.037 14 N -0.555 5.555 15 H 0.435 0.565 16 N -0.711 5.711 17 C 0.540 3.460 18 O -0.547 6.547 19 C -0.133 4.133 20 S -0.143 6.143 21 C -0.545 4.545 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.994 3.006 26 H -0.258 1.258 27 H -0.274 1.274 28 H -0.276 1.276 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.413 0.587 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.176 0.824 40 H 0.215 0.785 41 H 0.413 0.587 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.666 -1.842 -9.572 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.038 3.962 4 H 0.103 0.897 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.304 3.696 8 O -0.442 6.442 9 C -0.095 4.095 10 C -0.065 4.065 11 N -0.234 5.234 12 C -0.216 4.216 13 C -0.172 4.172 14 N -0.160 5.160 15 H 0.276 0.724 16 N -0.366 5.366 17 C 0.326 3.674 18 O -0.424 6.424 19 C -0.284 4.284 20 S 0.084 5.916 21 C -0.693 4.693 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.182 1.182 27 H -0.199 1.199 28 H -0.202 1.202 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.250 0.750 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.193 0.807 40 H 0.231 0.769 41 H 0.250 0.750 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.585 -3.067 -10.652 26.060 hybrid contribution 0.416 1.458 1.457 2.102 sum 24.001 -1.610 -9.195 25.752 Atomic orbital electron populations 1.21733 0.96334 1.00591 1.01409 1.21867 0.95419 0.95152 1.03982 1.21251 0.93130 0.94467 0.87333 0.89741 1.21550 0.91164 0.83770 1.03540 1.45856 1.07039 1.10218 1.74265 1.20575 0.81969 0.91302 0.75753 1.90769 1.56684 1.47506 1.49259 1.20066 0.85833 0.95051 1.08505 1.22680 0.95493 0.95739 0.92589 1.70156 1.02105 1.23234 1.27886 1.22763 0.95463 1.02741 1.00675 1.23290 0.87113 1.03636 1.03169 1.43217 1.06864 1.35725 1.30220 0.72358 1.45842 1.15759 1.57740 1.17223 1.19828 0.81818 0.77583 0.88161 1.90723 1.51769 1.58915 1.41010 1.23403 1.02242 1.03737 0.99052 1.85506 1.13093 1.71905 1.21115 1.23240 1.04332 1.41819 0.99865 0.90130 1.26066 0.94461 0.96026 1.02538 1.70180 1.05656 1.42236 1.36625 0.84966 0.78661 0.77781 0.76929 1.18157 1.19923 1.20185 0.93783 0.92587 0.94782 0.88887 0.90483 0.89630 0.90576 0.75033 0.83613 0.84431 0.80693 0.76864 0.75019 0.88022 0.87119 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.51 71.98 0.61 -3.07 16 2 C -0.13 -2.25 5.61 30.59 0.17 -2.08 16 3 C 0.14 2.55 2.42 44.99 0.11 2.66 16 4 H 0.08 1.80 7.58 -2.39 -0.02 1.78 16 5 C 0.12 1.87 5.23 86.38 0.45 2.32 16 6 N -0.72 -10.22 5.39 -463.07 -2.49 -12.71 16 7 C 0.52 9.60 7.82 87.66 0.69 10.29 16 8 O -0.56 -16.13 15.56 -3.04 -0.05 -16.18 16 9 C -0.05 -0.65 6.33 29.10 0.18 -0.46 16 10 C 0.20 3.69 6.95 138.13 0.96 4.65 16 11 N -0.51 -13.18 10.60 -188.13 -1.99 -15.17 16 12 C -0.07 -1.38 11.87 83.52 0.99 -0.38 16 13 C -0.04 -0.47 12.04 83.09 1.00 0.53 16 14 N -0.56 -6.54 6.15 -186.27 -1.15 -7.68 16 15 H 0.44 1.69 8.96 -92.71 -0.83 0.86 16 16 N -0.71 -14.41 4.47 -442.51 -1.98 -16.38 16 17 C 0.54 16.98 6.42 87.66 0.56 17.54 16 18 O -0.55 -21.75 13.00 -3.02 -0.04 -21.79 16 19 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 20 S -0.14 -7.53 20.57 -56.49 -1.16 -8.70 16 21 C -0.54 -30.12 9.50 67.95 0.65 -29.48 16 22 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 23 C 0.01 0.77 5.49 84.86 0.47 1.24 16 24 N -0.91 -54.70 13.22 21.65 0.29 -54.41 16 25 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 29 H 0.04 1.26 7.85 -2.39 -0.02 1.24 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 1.08 5.64 -2.39 -0.01 1.06 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.41 4.66 8.14 -92.71 -0.75 3.91 16 37 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.21 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.41 6.37 8.60 -92.71 -0.80 5.57 16 42 H 0.10 3.41 8.14 -2.40 -0.02 3.39 16 43 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 44 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -88.15 386.45 -0.60 -88.74 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -1.33 Total: 20.07 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 7.28 Total: -0.60 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -7.33 Total: -106.37 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.09 Total: -37.97 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.70 kcal Total: -88.15 -0.60 -88.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499309119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.247 kcal (2) G-P(sol) polarization free energy of solvation -88.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds