Wall clock time and date at job start Sat Apr 11 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30272 * 126.28137 * 2 1 4 4 N 1.28674 * 109.37817 * 179.82904 * 3 2 1 5 5 C 1.30271 * 109.38072 * 0.43967 * 4 3 2 6 6 C 1.50702 * 126.28041 * 179.73255 * 5 4 3 7 7 N 1.46896 * 109.47078 * 90.00350 * 6 5 4 8 8 C 1.46901 * 111.00217 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47436 * 179.97438 * 8 7 6 10 10 H 1.09006 * 109.87264 * 64.30220 * 9 8 7 11 11 C 1.54315 * 109.88430 * 185.31757 * 9 8 7 12 12 C 1.55405 * 102.83076 * 141.51954 * 11 9 8 13 13 C 1.54909 * 101.66345 * 324.66373 * 12 11 9 14 14 N 1.47029 * 109.88542 * 303.29015 * 9 8 7 15 15 C 1.34777 * 125.64810 * 61.67126 * 14 9 8 16 16 O 1.21279 * 119.99924 * 0.02562 * 15 14 9 17 17 C 1.50700 * 119.99623 * 180.02562 * 15 14 9 18 18 S 1.81006 * 109.46686 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99678 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00014 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99971 * 179.97438 * 19 18 17 22 22 N 1.31636 * 119.99852 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46920 * 60.00509 * 23 21 19 25 25 H 1.48500 * 109.47205 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47396 * 300.00562 * 23 21 19 27 27 O 1.34363 * 126.28113 * 180.31067 * 2 1 3 28 28 H 1.09002 * 109.47152 * 269.69039 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69140 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69120 * 1 2 3 31 31 H 1.09001 * 109.46705 * 210.00031 * 6 5 4 32 32 H 1.08997 * 109.47241 * 330.00017 * 6 5 4 33 33 H 1.00905 * 111.00157 * 56.04758 * 7 6 5 34 34 H 1.08993 * 109.47026 * 300.00419 * 8 7 6 35 35 H 1.09007 * 109.46485 * 60.00000 * 8 7 6 36 36 H 1.09003 * 110.72260 * 259.97452 * 11 9 8 37 37 H 1.09000 * 110.72222 * 23.24842 * 11 9 8 38 38 H 1.08996 * 111.04080 * 206.52391 * 12 11 9 39 39 H 1.09004 * 110.92237 * 82.74324 * 12 11 9 40 40 H 1.08992 * 110.37119 * 278.08290 * 13 12 11 41 41 H 1.09001 * 110.45628 * 155.80765 * 13 12 11 42 42 H 1.08997 * 109.46759 * 299.99947 * 17 15 14 43 43 H 1.08996 * 109.46940 * 60.00088 * 17 15 14 44 44 H 0.96996 * 119.99672 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6760 0.0036 5 6 3.5654 -0.6254 -0.0034 6 6 4.8177 -1.4638 -0.0079 7 7 5.2246 -1.7437 1.3755 8 6 6.4445 -2.5614 1.4104 9 6 6.8365 -2.8309 2.8645 10 1 6.0659 -3.4289 3.3513 11 6 8.1877 -3.5747 2.9146 12 6 8.8910 -2.9305 4.1415 13 6 8.4034 -1.4631 4.0472 14 7 7.0083 -1.5582 3.5803 15 6 6.0491 -0.6322 3.7774 16 8 4.9303 -0.8170 3.3475 17 6 6.3669 0.6329 4.5321 18 16 4.8838 1.6659 4.6298 19 6 5.5241 3.0358 5.5342 20 1 6.5583 3.0416 5.8452 21 6 4.6993 4.1073 5.8471 22 7 3.4385 4.1000 5.4685 23 14 5.3779 5.5594 6.8066 24 1 6.4947 6.1763 6.0468 25 1 4.3035 6.5642 7.0095 26 1 5.8751 5.0923 8.1256 27 8 2.3021 -1.0831 -0.0059 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 4.6244 -2.4027 -0.5268 32 1 5.6147 -0.9237 -0.5189 33 1 4.4778 -2.1870 1.8895 34 1 6.2622 -3.5078 0.9014 35 1 7.2530 -2.0291 0.9091 36 1 8.0346 -4.6425 3.0715 37 1 8.7603 -3.3959 2.0045 38 1 9.9752 -2.9889 4.0464 39 1 8.5567 -3.3943 5.0696 40 1 9.0069 -0.9083 3.3289 41 1 8.4442 -0.9845 5.0256 42 1 6.7010 0.3812 5.5387 43 1 7.1557 1.1772 4.0130 44 1 2.8623 4.8490 5.6868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499875011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:12 Heat of formation + Delta-G solvation = 31.551145 kcal Electronic energy + Delta-G solvation = -27724.783925 eV Core-core repulsion = 23806.569259 eV Total energy + Delta-G solvation = -3918.214665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.88836 -39.90556 -36.98904 -36.12284 -35.83368 -32.85011 -32.30539 -31.66289 -30.67669 -28.63509 -28.26604 -26.05349 -25.36044 -24.04662 -22.51213 -22.27820 -21.90109 -21.14820 -18.83950 -17.60988 -17.18510 -16.99269 -16.79813 -16.33579 -15.67339 -14.95671 -14.70122 -14.66514 -14.44670 -14.41121 -14.08076 -13.72452 -13.51555 -13.30928 -13.15889 -12.83617 -12.73158 -12.52973 -12.44215 -12.11330 -12.02000 -11.73908 -11.48423 -11.46669 -11.38168 -11.19651 -10.95798 -10.92058 -10.90857 -10.66428 -10.57695 -9.68583 -9.25946 -8.99072 -8.93934 -8.53255 -8.05625 -7.92207 -6.32348 -6.08831 -3.77041 1.39707 2.45117 2.75378 3.08668 3.31056 3.33661 3.36782 3.43785 3.77800 3.95219 4.21071 4.32404 4.39548 4.54705 4.61533 4.69722 4.84995 4.99970 5.12688 5.20064 5.25627 5.26303 5.27916 5.28272 5.37965 5.41747 5.49380 5.53420 5.61432 5.66846 5.69235 5.70207 5.80794 5.82729 5.92013 5.95349 6.06076 6.11883 6.31555 6.60527 6.92005 7.45794 7.70604 7.96096 8.46913 8.67081 8.94050 9.35889 10.98361 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007028 B = 0.004826 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.231800 B = 5799.993288 C = 9370.962276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.154 3.846 3 N -0.280 5.280 4 N -0.253 5.253 5 C 0.166 3.834 6 C 0.159 3.841 7 N -0.648 5.648 8 C 0.052 3.948 9 C 0.141 3.859 10 H 0.069 0.931 11 C -0.125 4.125 12 C -0.132 4.132 13 C 0.101 3.899 14 N -0.619 5.619 15 C 0.552 3.448 16 O -0.479 6.479 17 C -0.144 4.144 18 S -0.054 6.054 19 C -0.535 4.535 20 H 0.069 0.931 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.916 3.084 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.275 1.275 27 O -0.234 6.234 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.359 0.641 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -19.131 -10.157 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.057 4.057 3 N -0.127 5.127 4 N -0.100 5.100 5 C -0.045 4.045 6 C 0.029 3.971 7 N -0.286 5.286 8 C -0.079 4.079 9 C 0.037 3.963 10 H 0.088 0.912 11 C -0.163 4.163 12 C -0.170 4.170 13 C -0.023 4.023 14 N -0.358 5.358 15 C 0.339 3.661 16 O -0.349 6.349 17 C -0.295 4.295 18 S 0.173 5.827 19 C -0.683 4.683 20 H 0.088 0.912 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.742 3.258 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.201 1.201 27 O -0.114 6.114 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.182 0.818 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.281 -17.396 -10.702 20.868 hybrid contribution 1.157 -0.802 0.963 1.706 sum 5.437 -18.198 -9.739 21.345 Atomic orbital electron populations 1.20298 0.80561 1.05069 1.05327 1.27925 0.97691 0.79795 1.00258 1.74469 0.96188 1.25453 1.16613 1.74424 1.11770 1.08989 1.14779 1.27636 0.84533 0.91867 1.00482 1.20246 0.87911 0.95694 0.93293 1.60959 1.07656 1.50984 1.08973 1.22462 0.93657 0.95076 0.96657 1.21457 0.97306 0.85994 0.91566 0.91249 1.22675 0.94922 0.99568 0.99154 1.22804 1.00460 0.95261 0.98481 1.22227 0.83153 0.96777 1.00098 1.48449 1.10453 1.19375 1.57502 1.19704 0.83924 0.83055 0.79388 1.90577 1.20914 1.76787 1.46667 1.23474 1.07243 0.97379 1.01358 1.85408 1.07945 1.16235 1.73140 1.22837 0.99265 1.05487 1.40724 0.91244 1.24961 0.94647 0.98008 0.95891 1.70021 1.04876 1.31414 1.43927 0.86275 0.78553 0.81028 0.79926 1.19982 1.20870 1.20058 1.84693 1.17796 1.38644 1.70246 0.88248 0.89416 0.87721 0.93023 0.87124 0.81840 0.94735 0.90602 0.90233 0.90433 0.90043 0.90663 0.91776 0.90613 0.90137 0.89906 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.15 2.45 8.48 -12.94 -0.11 2.34 16 3 N -0.28 -5.63 12.22 32.55 0.40 -5.23 16 4 N -0.25 -5.25 12.22 32.55 0.40 -4.85 16 5 C 0.17 2.82 7.99 -12.94 -0.10 2.72 16 6 C 0.16 2.04 6.31 -4.98 -0.03 2.01 16 7 N -0.65 -9.27 3.30 -115.06 -0.38 -9.65 16 8 C 0.05 0.54 5.26 -3.83 -0.02 0.52 16 9 C 0.14 1.53 3.28 -66.96 -0.22 1.31 16 10 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.12 -0.90 6.50 -24.77 -0.16 -1.06 16 12 C -0.13 -1.00 7.09 -24.45 -0.17 -1.17 16 13 C 0.10 1.10 6.70 -2.53 -0.02 1.08 16 14 N -0.62 -8.73 3.06 -163.02 -0.50 -9.23 16 15 C 0.55 10.66 7.44 -10.99 -0.08 10.58 16 16 O -0.48 -10.50 12.03 5.56 0.07 -10.43 16 17 C -0.14 -3.12 5.16 36.01 0.19 -2.94 16 18 S -0.05 -1.54 20.57 -107.50 -2.21 -3.75 16 19 C -0.53 -15.96 9.50 30.94 0.29 -15.67 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.21 5.49 -17.43 -0.10 2.11 16 22 N -0.87 -27.30 13.22 55.49 0.73 -26.56 16 23 Si 0.92 22.31 29.55 -169.99 -5.02 17.29 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 O -0.23 -3.73 10.87 5.38 0.06 -3.67 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.36 5.57 7.41 -39.29 -0.29 5.28 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.49 7.80 -51.93 -0.40 0.08 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.85 7.47 -51.93 -0.39 0.46 16 42 H 0.08 1.64 7.84 -51.92 -0.41 1.23 16 43 H 0.08 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -39.19 380.49 -7.41 -46.60 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.53 Total: 2.09 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -0.15 Total: 1.68 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.65 Total: -55.53 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.13 Total: -14.10 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.19 -7.41 -46.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499875011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.150 kcal (2) G-P(sol) polarization free energy of solvation -39.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds