Wall clock time and date at job start Sat Apr 11 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30272 * 126.28137 * 2 1 4 4 N 1.28674 * 109.37817 * 179.82904 * 3 2 1 5 5 C 1.30271 * 109.38072 * 0.43967 * 4 3 2 6 6 C 1.50702 * 126.28041 * 179.73255 * 5 4 3 7 7 N 1.46896 * 109.47078 * 90.00350 * 6 5 4 8 8 C 1.46901 * 111.00217 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47436 * 179.97438 * 8 7 6 10 10 H 1.09006 * 109.87264 * 64.30220 * 9 8 7 11 11 C 1.54315 * 109.88430 * 185.31757 * 9 8 7 12 12 C 1.55405 * 102.83076 * 141.51954 * 11 9 8 13 13 C 1.54909 * 101.66345 * 324.66373 * 12 11 9 14 14 N 1.47029 * 109.88542 * 303.29015 * 9 8 7 15 15 C 1.34777 * 125.64810 * 61.67126 * 14 9 8 16 16 O 1.21279 * 119.99924 * 0.02562 * 15 14 9 17 17 C 1.50700 * 119.99623 * 180.02562 * 15 14 9 18 18 S 1.81006 * 109.46686 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99678 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00014 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99971 * 179.97438 * 19 18 17 22 22 N 1.31636 * 119.99852 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46920 * 60.00509 * 23 21 19 25 25 H 1.48500 * 109.47205 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47396 * 300.00562 * 23 21 19 27 27 O 1.34363 * 126.28113 * 180.31067 * 2 1 3 28 28 H 1.09002 * 109.47152 * 269.69039 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69140 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69120 * 1 2 3 31 31 H 1.09001 * 109.46705 * 210.00031 * 6 5 4 32 32 H 1.08997 * 109.47241 * 330.00017 * 6 5 4 33 33 H 1.00905 * 111.00157 * 56.04758 * 7 6 5 34 34 H 1.08993 * 109.47026 * 300.00419 * 8 7 6 35 35 H 1.09007 * 109.46485 * 60.00000 * 8 7 6 36 36 H 1.09003 * 110.72260 * 259.97452 * 11 9 8 37 37 H 1.09000 * 110.72222 * 23.24842 * 11 9 8 38 38 H 1.08996 * 111.04080 * 206.52391 * 12 11 9 39 39 H 1.09004 * 110.92237 * 82.74324 * 12 11 9 40 40 H 1.08992 * 110.37119 * 278.08290 * 13 12 11 41 41 H 1.09001 * 110.45628 * 155.80765 * 13 12 11 42 42 H 1.08997 * 109.46759 * 299.99947 * 17 15 14 43 43 H 1.08996 * 109.46940 * 60.00088 * 17 15 14 44 44 H 0.96996 * 119.99672 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6760 0.0036 5 6 3.5654 -0.6254 -0.0034 6 6 4.8177 -1.4638 -0.0079 7 7 5.2246 -1.7437 1.3755 8 6 6.4445 -2.5614 1.4104 9 6 6.8365 -2.8309 2.8645 10 1 6.0659 -3.4289 3.3513 11 6 8.1877 -3.5747 2.9146 12 6 8.8910 -2.9305 4.1415 13 6 8.4034 -1.4631 4.0472 14 7 7.0083 -1.5582 3.5803 15 6 6.0491 -0.6322 3.7774 16 8 4.9303 -0.8170 3.3475 17 6 6.3669 0.6329 4.5321 18 16 4.8838 1.6659 4.6298 19 6 5.5241 3.0358 5.5342 20 1 6.5583 3.0416 5.8452 21 6 4.6993 4.1073 5.8471 22 7 3.4385 4.1000 5.4685 23 14 5.3779 5.5594 6.8066 24 1 6.4947 6.1763 6.0468 25 1 4.3035 6.5642 7.0095 26 1 5.8751 5.0923 8.1256 27 8 2.3021 -1.0831 -0.0059 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 4.6244 -2.4027 -0.5268 32 1 5.6147 -0.9237 -0.5189 33 1 4.4778 -2.1870 1.8895 34 1 6.2622 -3.5078 0.9014 35 1 7.2530 -2.0291 0.9091 36 1 8.0346 -4.6425 3.0715 37 1 8.7603 -3.3959 2.0045 38 1 9.9752 -2.9889 4.0464 39 1 8.5567 -3.3943 5.0696 40 1 9.0069 -0.9083 3.3289 41 1 8.4442 -0.9845 5.0256 42 1 6.7010 0.3812 5.5387 43 1 7.1557 1.1772 4.0130 44 1 2.8623 4.8490 5.6868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499875011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:12 Heat of formation + Delta-G solvation = -1.039761 kcal Electronic energy + Delta-G solvation = -27726.197172 eV Core-core repulsion = 23806.569259 eV Total energy + Delta-G solvation = -3919.627913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.18954 -41.02057 -38.25390 -37.19986 -37.08304 -34.58596 -33.95850 -32.80980 -31.55842 -30.11480 -29.34531 -27.65735 -27.11986 -25.04274 -23.72117 -23.35048 -23.08660 -21.93046 -20.21722 -19.42614 -18.48145 -18.30977 -18.01234 -17.42991 -16.89102 -16.82976 -16.26142 -15.87283 -15.80357 -15.54500 -15.38774 -15.03523 -14.63597 -14.42768 -14.08608 -13.97953 -13.88526 -13.56751 -13.52893 -13.39882 -13.23759 -13.06689 -13.04410 -12.86583 -12.84157 -12.61707 -12.50395 -12.05933 -12.01697 -11.82607 -11.70486 -11.54429 -11.13071 -10.58413 -10.44598 -10.22298 -9.60724 -8.96957 -8.62023 -8.33820 -6.10401 0.16332 1.26954 1.28646 1.41495 1.41984 1.45799 1.57145 1.93595 2.24753 2.32956 2.88541 2.99304 3.24881 3.33881 3.48840 3.67023 3.79320 3.85338 3.96902 4.12056 4.16597 4.26255 4.34671 4.36677 4.39667 4.48691 4.50958 4.53245 4.58274 4.63582 4.65963 4.72954 4.76617 4.89437 5.02723 5.03135 5.14293 5.19718 5.39287 5.42107 5.60931 6.01667 6.18612 6.39181 6.67961 7.06348 7.34292 7.51652 8.75077 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007028 B = 0.004826 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.231800 B = 5799.993288 C = 9370.962276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.164 3.836 3 N -0.338 5.338 4 N -0.311 5.311 5 C 0.172 3.828 6 C 0.162 3.838 7 N -0.677 5.677 8 C 0.054 3.946 9 C 0.133 3.867 10 H 0.061 0.939 11 C -0.111 4.111 12 C -0.121 4.121 13 C 0.088 3.912 14 N -0.612 5.612 15 C 0.548 3.452 16 O -0.513 6.513 17 C -0.118 4.118 18 S -0.143 6.143 19 C -0.549 4.549 20 H 0.077 0.923 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.259 1.259 27 O -0.233 6.233 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.348 0.652 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 -21.312 -10.213 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.048 4.048 3 N -0.184 5.184 4 N -0.157 5.157 5 C -0.041 4.041 6 C 0.032 3.968 7 N -0.314 5.314 8 C -0.074 4.074 9 C 0.030 3.970 10 H 0.079 0.921 11 C -0.149 4.149 12 C -0.159 4.159 13 C -0.034 4.034 14 N -0.349 5.349 15 C 0.334 3.666 16 O -0.386 6.386 17 C -0.270 4.270 18 S 0.085 5.915 19 C -0.697 4.697 20 H 0.095 0.905 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.184 1.184 27 O -0.113 6.113 28 H 0.125 0.875 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.169 0.831 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.562 -19.605 -10.769 23.311 hybrid contribution 0.503 -0.268 0.958 1.115 sum 7.065 -19.873 -9.811 23.261 Atomic orbital electron populations 1.20682 0.76506 1.07550 1.06428 1.29050 0.99500 0.78937 0.97315 1.74339 0.96752 1.27710 1.19610 1.74291 1.12696 1.11252 1.17427 1.28441 0.85840 0.91439 0.98375 1.20471 0.86290 0.96697 0.93302 1.60841 1.08471 1.52564 1.09505 1.22532 0.92061 0.96157 0.96699 1.21810 0.99590 0.84357 0.91250 0.92120 1.22697 0.92316 1.00205 0.99707 1.22792 1.02050 0.92269 0.98766 1.22545 0.81365 0.99707 0.99819 1.48323 1.10695 1.19229 1.56641 1.19234 0.84566 0.83276 0.79496 1.90581 1.22461 1.77501 1.48084 1.23287 1.03213 0.97717 1.02783 1.85547 1.13796 1.18552 1.73631 1.23174 0.99705 1.05955 1.40889 0.90485 1.26136 0.94800 1.01400 0.96798 1.70200 1.06605 1.32596 1.45390 0.85025 0.78019 0.76482 0.78587 1.18851 1.20144 1.18380 1.84719 1.17648 1.38550 1.70363 0.87540 0.85754 0.86363 0.89084 0.86653 0.83092 0.91315 0.90235 0.87841 0.88643 0.87274 0.90692 0.90921 0.91401 0.88954 0.89531 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.03 10.51 71.24 0.75 -0.28 16 2 C 0.16 5.36 8.48 88.34 0.75 6.11 16 3 N -0.34 -14.45 12.22 -165.50 -2.02 -16.47 16 4 N -0.31 -13.73 12.22 -165.50 -2.02 -15.75 16 5 C 0.17 6.02 7.99 88.34 0.71 6.73 16 6 C 0.16 4.08 6.31 85.56 0.54 4.62 16 7 N -0.68 -19.13 3.30 -517.95 -1.71 -20.84 16 8 C 0.05 1.02 5.26 86.30 0.45 1.47 16 9 C 0.13 2.58 3.28 45.34 0.15 2.73 16 10 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 11 C -0.11 -1.11 6.50 31.87 0.21 -0.90 16 12 C -0.12 -1.37 7.09 32.07 0.23 -1.14 16 13 C 0.09 1.72 6.70 86.86 0.58 2.30 16 14 N -0.61 -16.62 3.06 -788.07 -2.42 -19.04 16 15 C 0.55 21.60 7.44 87.66 0.65 22.26 16 16 O -0.51 -23.40 12.03 -3.03 -0.04 -23.44 16 17 C -0.12 -5.29 5.16 71.24 0.37 -4.93 16 18 S -0.14 -8.55 20.57 -56.49 -1.16 -9.71 16 19 C -0.55 -33.67 9.50 67.95 0.65 -33.02 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -59.35 13.22 21.65 0.29 -59.06 16 23 Si 1.00 46.20 29.55 68.60 2.03 48.23 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 O -0.23 -7.54 10.87 -3.65 -0.04 -7.57 16 28 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.35 10.96 7.41 -89.69 -0.66 10.30 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.44 8.07 -2.38 -0.02 1.42 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 0.69 7.80 -2.39 -0.02 0.67 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.43 7.47 -2.39 -0.02 1.41 16 42 H 0.09 3.83 7.84 -2.40 -0.02 3.81 16 43 H 0.09 3.73 8.14 -2.40 -0.02 3.71 16 44 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -92.99 380.49 -0.24 -93.23 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.35 Total: 23.21 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.49 Total: 7.21 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -7.88 Total: -131.15 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.08 Total: -31.01 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -92.99 -0.24 -93.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499875011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.192 kcal (2) G-P(sol) polarization free energy of solvation -92.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds