Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30275 * 126.28435 * 2 1 4 4 N 1.28669 * 109.38335 * 180.02562 * 3 2 1 5 5 C 1.30273 * 109.38035 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.28242 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47107 * 90.03134 * 6 5 4 8 8 C 1.46901 * 111.00175 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47110 * 174.93310 * 8 7 6 10 10 H 1.09000 * 109.87078 * 54.54097 * 9 8 7 11 11 C 1.54326 * 109.88164 * 293.52989 * 9 8 7 12 12 C 1.55403 * 102.82541 * 218.47983 * 11 9 8 13 13 C 1.54905 * 101.66680 * 35.33998 * 12 11 9 14 14 N 1.47020 * 109.88172 * 175.56130 * 9 8 7 15 15 C 1.34771 * 125.64761 * 298.32139 * 14 9 8 16 16 O 1.21285 * 120.00359 * 4.92988 * 15 14 9 17 17 C 1.50701 * 120.00080 * 184.93350 * 15 14 9 18 18 S 1.80999 * 109.47205 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00009 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99699 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00167 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99725 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47211 * 59.99924 * 23 21 19 25 25 H 1.48507 * 109.47191 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47305 * 299.99720 * 23 21 19 27 27 O 1.34366 * 107.43747 * 0.24680 * 5 4 3 28 28 H 1.08996 * 109.47235 * 89.97529 * 1 2 3 29 29 H 1.09003 * 109.46686 * 209.97877 * 1 2 3 30 30 H 1.09000 * 109.46661 * 329.97304 * 1 2 3 31 31 H 1.08998 * 109.47404 * 210.03182 * 6 5 4 32 32 H 1.09004 * 109.47184 * 330.03316 * 6 5 4 33 33 H 1.00904 * 111.00035 * 56.04032 * 7 6 5 34 34 H 1.08996 * 109.47095 * 294.93447 * 8 7 6 35 35 H 1.09002 * 109.47158 * 54.93625 * 8 7 6 36 36 H 1.09002 * 110.71995 * 336.75315 * 11 9 8 37 37 H 1.08997 * 110.72117 * 100.02631 * 11 9 8 38 38 H 1.08997 * 110.89419 * 277.26698 * 12 11 9 39 39 H 1.09004 * 111.06776 * 153.48732 * 12 11 9 40 40 H 1.09000 * 110.36598 * 204.23460 * 13 12 11 41 41 H 1.08998 * 110.46180 * 81.95802 * 13 12 11 42 42 H 1.08997 * 109.47013 * 300.00063 * 17 15 14 43 43 H 1.08998 * 109.47012 * 59.99857 * 17 15 14 44 44 H 0.97010 * 119.99874 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8177 -1.4638 -0.0014 7 7 5.2254 -1.7366 1.3833 8 6 6.4460 -2.5531 1.4216 9 6 6.9095 -2.7099 2.8712 10 1 6.0973 -3.1091 3.4787 11 6 7.3594 -1.3432 3.4291 12 6 8.5955 -1.7139 4.2950 13 6 9.2204 -2.8673 3.4711 14 7 8.0687 -3.6123 2.9307 15 6 8.0768 -4.9063 2.5544 16 8 7.0931 -5.3945 2.0397 17 6 9.3083 -5.7470 2.7732 18 16 9.0084 -7.4258 2.1668 19 6 10.5632 -8.1674 2.5378 20 1 11.3426 -7.5831 3.0039 21 6 10.7860 -9.5025 2.2308 22 7 9.8358 -10.2148 1.6631 23 14 12.4345 -10.2885 2.6234 24 1 12.6849 -10.2098 4.0850 25 1 12.4174 -11.7120 2.2006 26 1 13.5115 -9.5689 1.8972 27 8 2.3021 -1.0832 -0.0052 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 4.6242 -2.4054 -0.5153 32 1 5.6144 -0.9263 -0.5156 33 1 4.4790 -2.1771 1.9000 34 1 6.2392 -3.5358 0.9979 35 1 7.2284 -2.0644 0.8408 36 1 7.6437 -0.6709 2.6196 37 1 6.5750 -0.8999 4.0425 38 1 8.2889 -2.0603 5.2819 39 1 9.2844 -0.8730 4.3749 40 1 9.8206 -3.5109 4.1142 41 1 9.8293 -2.4693 2.6594 42 1 10.1474 -5.3100 2.2318 43 1 9.5407 -5.7808 3.8375 44 1 9.9914 -11.1481 1.4489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499875012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = 8.561214 kcal Electronic energy + Delta-G solvation = -26240.373209 eV Core-core repulsion = 22321.161625 eV Total energy + Delta-G solvation = -3919.211584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.52878 -40.07636 -37.48714 -36.48926 -36.39208 -33.37348 -32.45737 -31.83089 -30.93500 -29.15007 -28.34888 -26.40393 -25.52122 -24.31927 -23.06352 -22.57983 -22.45642 -21.14739 -19.10916 -17.80601 -17.75007 -17.40380 -16.89081 -16.63905 -15.92943 -15.36340 -15.02109 -14.92909 -14.83051 -14.73697 -14.34156 -13.85915 -13.76638 -13.66318 -13.38041 -13.22010 -12.90558 -12.87221 -12.68977 -12.57517 -12.34596 -12.16429 -12.09121 -11.68378 -11.34505 -11.31666 -11.07020 -11.06172 -11.01914 -10.86736 -10.78784 -9.89497 -9.85151 -9.47836 -9.08577 -8.88559 -8.54678 -8.27555 -6.53640 -6.24346 -3.95335 0.77727 1.87266 2.05412 2.82586 2.98802 3.21526 3.22684 3.26883 3.40207 3.55854 3.96624 4.01807 4.17664 4.40574 4.43931 4.45065 4.70842 4.77705 4.80187 4.88670 4.94471 5.08034 5.10378 5.10880 5.14840 5.19481 5.24070 5.26933 5.39442 5.44820 5.54656 5.61584 5.66936 5.75314 5.79432 5.82871 5.93727 6.10392 6.10956 6.30182 6.52094 6.84463 7.56547 7.63596 7.99730 8.32300 8.49846 9.20913 10.82990 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.002010 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.611042 B =13929.380944 C =15123.286002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.161 3.839 3 N -0.291 5.291 4 N -0.268 5.268 5 C 0.169 3.831 6 C 0.158 3.842 7 N -0.679 5.679 8 C 0.046 3.954 9 C 0.144 3.856 10 H 0.073 0.927 11 C -0.113 4.113 12 C -0.137 4.137 13 C 0.100 3.900 14 N -0.622 5.622 15 C 0.550 3.450 16 O -0.516 6.516 17 C -0.148 4.148 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 O -0.226 6.226 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.347 0.653 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.203 21.793 0.508 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.050 4.050 3 N -0.139 5.139 4 N -0.115 5.115 5 C -0.043 4.043 6 C 0.027 3.973 7 N -0.312 5.312 8 C -0.083 4.083 9 C 0.040 3.960 10 H 0.091 0.909 11 C -0.151 4.151 12 C -0.175 4.175 13 C -0.023 4.023 14 N -0.359 5.359 15 C 0.338 3.662 16 O -0.391 6.391 17 C -0.298 4.298 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 O -0.105 6.105 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.997 22.599 -0.303 26.072 hybrid contribution 1.515 -2.016 0.599 2.592 sum -11.482 20.584 0.296 23.571 Atomic orbital electron populations 1.20369 0.80170 1.05812 1.05286 1.28055 0.97890 0.79656 0.99383 1.74437 0.96167 1.25628 1.17671 1.74403 1.11939 1.09179 1.15994 1.27847 0.84835 0.91702 0.99929 1.20315 0.87684 0.96827 0.92449 1.60377 1.07918 1.51870 1.11003 1.22414 0.91430 0.96700 0.97767 1.21348 0.89294 0.90107 0.95241 0.90938 1.22618 0.97624 0.95272 0.99576 1.22865 0.97738 0.97968 0.98894 1.22310 0.89020 0.93593 0.97351 1.48571 1.11839 1.09711 1.65826 1.20052 0.89598 0.79656 0.76854 1.90681 1.35681 1.70962 1.41740 1.23519 0.97781 1.03354 1.05148 1.85365 1.21385 0.97169 1.79511 1.22815 0.99812 0.98601 1.47152 0.90964 1.24990 0.97885 0.96089 0.94591 1.70009 1.32505 1.08702 1.39085 0.86222 0.82276 0.78111 0.78887 1.19924 1.20797 1.19916 1.84800 1.17709 1.38452 1.69563 0.88277 0.88782 0.87477 0.91257 0.86099 0.83554 0.92083 0.90235 0.90151 0.90086 0.90683 0.89894 0.90282 0.91334 0.89310 0.89256 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.16 1.49 8.48 -12.94 -0.11 1.38 16 3 N -0.29 -3.54 12.22 32.55 0.40 -3.14 16 4 N -0.27 -3.44 12.22 32.55 0.40 -3.04 16 5 C 0.17 1.81 7.99 -12.94 -0.10 1.71 16 6 C 0.16 1.39 6.30 -4.98 -0.03 1.36 16 7 N -0.68 -6.43 6.25 -115.06 -0.72 -7.15 16 8 C 0.05 0.51 5.07 -3.82 -0.02 0.49 16 9 C 0.14 1.65 3.12 -66.95 -0.21 1.44 16 10 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.11 -0.97 6.29 -24.76 -0.16 -1.13 16 12 C -0.14 -1.09 7.09 -24.45 -0.17 -1.26 16 13 C 0.10 1.03 6.74 -2.53 -0.02 1.02 16 14 N -0.62 -8.51 3.06 -163.02 -0.50 -9.01 16 15 C 0.55 10.14 7.68 -10.99 -0.08 10.06 16 16 O -0.52 -11.25 14.66 5.55 0.08 -11.17 16 17 C -0.15 -2.96 5.09 36.01 0.18 -2.77 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 23 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 O -0.23 -2.33 10.87 5.36 0.06 -2.27 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.35 3.25 8.78 -39.29 -0.34 2.90 16 34 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 35 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.08 0.68 7.78 -51.93 -0.40 0.28 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.81 7.47 -51.93 -0.39 0.42 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.68 7.95 -51.92 -0.41 1.26 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -36.08 385.58 -7.62 -43.70 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.50 Total: -0.47 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.14 Total: -0.38 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.31 Total: -47.56 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.14 Total: -13.44 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.08 -7.62 -43.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499875012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.263 kcal (2) G-P(sol) polarization free energy of solvation -36.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds