Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30275 * 126.28435 * 2 1 4 4 N 1.28669 * 109.38335 * 180.02562 * 3 2 1 5 5 C 1.30273 * 109.38035 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.28242 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47107 * 90.03134 * 6 5 4 8 8 C 1.46901 * 111.00175 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47110 * 174.93310 * 8 7 6 10 10 H 1.09000 * 109.87078 * 54.54097 * 9 8 7 11 11 C 1.54326 * 109.88164 * 293.52989 * 9 8 7 12 12 C 1.55403 * 102.82541 * 218.47983 * 11 9 8 13 13 C 1.54905 * 101.66680 * 35.33998 * 12 11 9 14 14 N 1.47020 * 109.88172 * 175.56130 * 9 8 7 15 15 C 1.34771 * 125.64761 * 298.32139 * 14 9 8 16 16 O 1.21285 * 120.00359 * 4.92988 * 15 14 9 17 17 C 1.50701 * 120.00080 * 184.93350 * 15 14 9 18 18 S 1.80999 * 109.47205 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00009 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99699 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00167 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99725 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47211 * 59.99924 * 23 21 19 25 25 H 1.48507 * 109.47191 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47305 * 299.99720 * 23 21 19 27 27 O 1.34366 * 107.43747 * 0.24680 * 5 4 3 28 28 H 1.08996 * 109.47235 * 89.97529 * 1 2 3 29 29 H 1.09003 * 109.46686 * 209.97877 * 1 2 3 30 30 H 1.09000 * 109.46661 * 329.97304 * 1 2 3 31 31 H 1.08998 * 109.47404 * 210.03182 * 6 5 4 32 32 H 1.09004 * 109.47184 * 330.03316 * 6 5 4 33 33 H 1.00904 * 111.00035 * 56.04032 * 7 6 5 34 34 H 1.08996 * 109.47095 * 294.93447 * 8 7 6 35 35 H 1.09002 * 109.47158 * 54.93625 * 8 7 6 36 36 H 1.09002 * 110.71995 * 336.75315 * 11 9 8 37 37 H 1.08997 * 110.72117 * 100.02631 * 11 9 8 38 38 H 1.08997 * 110.89419 * 277.26698 * 12 11 9 39 39 H 1.09004 * 111.06776 * 153.48732 * 12 11 9 40 40 H 1.09000 * 110.36598 * 204.23460 * 13 12 11 41 41 H 1.08998 * 110.46180 * 81.95802 * 13 12 11 42 42 H 1.08997 * 109.47013 * 300.00063 * 17 15 14 43 43 H 1.08998 * 109.47012 * 59.99857 * 17 15 14 44 44 H 0.97010 * 119.99874 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8177 -1.4638 -0.0014 7 7 5.2254 -1.7366 1.3833 8 6 6.4460 -2.5531 1.4216 9 6 6.9095 -2.7099 2.8712 10 1 6.0973 -3.1091 3.4787 11 6 7.3594 -1.3432 3.4291 12 6 8.5955 -1.7139 4.2950 13 6 9.2204 -2.8673 3.4711 14 7 8.0687 -3.6123 2.9307 15 6 8.0768 -4.9063 2.5544 16 8 7.0931 -5.3945 2.0397 17 6 9.3083 -5.7470 2.7732 18 16 9.0084 -7.4258 2.1668 19 6 10.5632 -8.1674 2.5378 20 1 11.3426 -7.5831 3.0039 21 6 10.7860 -9.5025 2.2308 22 7 9.8358 -10.2148 1.6631 23 14 12.4345 -10.2885 2.6234 24 1 12.6849 -10.2098 4.0850 25 1 12.4174 -11.7120 2.2006 26 1 13.5115 -9.5689 1.8972 27 8 2.3021 -1.0832 -0.0052 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 4.6242 -2.4054 -0.5153 32 1 5.6144 -0.9263 -0.5156 33 1 4.4790 -2.1771 1.9000 34 1 6.2392 -3.5358 0.9979 35 1 7.2284 -2.0644 0.8408 36 1 7.6437 -0.6709 2.6196 37 1 6.5750 -0.8999 4.0425 38 1 8.2889 -2.0603 5.2819 39 1 9.2844 -0.8730 4.3749 40 1 9.8206 -3.5109 4.1142 41 1 9.8293 -2.4693 2.6594 42 1 10.1474 -5.3100 2.2318 43 1 9.5407 -5.7808 3.8375 44 1 9.9914 -11.1481 1.4489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499875012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = -21.589864 kcal Electronic energy + Delta-G solvation = -26241.680658 eV Core-core repulsion = 22321.161625 eV Total energy + Delta-G solvation = -3920.519032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.32054 -41.23231 -38.68635 -37.32215 -37.24375 -34.59533 -34.07516 -32.95594 -31.70247 -30.33653 -29.27486 -27.66940 -27.18496 -25.22857 -23.79578 -23.57351 -23.23198 -22.00252 -20.43233 -19.51369 -18.60483 -18.31635 -18.09317 -17.56540 -16.95440 -16.88122 -16.42308 -16.12869 -15.96249 -15.62322 -15.59326 -15.17570 -14.70421 -14.49355 -14.16578 -14.04332 -13.95824 -13.66966 -13.59209 -13.51200 -13.42026 -13.34084 -13.14373 -12.98130 -12.87900 -12.69797 -12.63186 -12.11734 -12.06775 -11.83118 -11.74164 -11.56932 -11.13715 -10.95300 -10.64707 -10.29679 -9.80747 -9.62580 -8.68371 -8.35547 -6.13938 0.02595 1.15257 1.23591 1.25747 1.43366 1.44426 1.54364 1.55367 2.05030 2.26726 2.72171 2.98565 3.10783 3.26595 3.35085 3.57128 3.66658 3.78854 3.88321 3.97958 4.09329 4.19060 4.28557 4.29821 4.33082 4.40422 4.43340 4.47319 4.51945 4.55056 4.65285 4.70707 4.74472 4.87246 5.03325 5.03636 5.06901 5.18179 5.34458 5.40568 5.43883 5.61057 6.01702 6.18566 6.40607 7.05631 7.11610 7.19359 8.73326 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.002010 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.611042 B =13929.380944 C =15123.286002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.172 3.828 3 N -0.330 5.330 4 N -0.297 5.297 5 C 0.168 3.832 6 C 0.160 3.840 7 N -0.671 5.671 8 C 0.058 3.942 9 C 0.139 3.861 10 H 0.061 0.939 11 C -0.102 4.102 12 C -0.125 4.125 13 C 0.088 3.912 14 N -0.612 5.612 15 C 0.547 3.453 16 O -0.561 6.561 17 C -0.121 4.121 18 S -0.148 6.148 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 O -0.234 6.234 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.347 0.653 34 H 0.027 0.973 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 23.619 1.575 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 N -0.176 5.176 4 N -0.143 5.143 5 C -0.045 4.045 6 C 0.030 3.970 7 N -0.304 5.304 8 C -0.071 4.071 9 C 0.035 3.965 10 H 0.079 0.921 11 C -0.140 4.140 12 C -0.163 4.163 13 C -0.033 4.033 14 N -0.347 5.347 15 C 0.336 3.664 16 O -0.439 6.439 17 C -0.273 4.273 18 S 0.079 5.921 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.186 1.186 27 O -0.113 6.113 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.164 0.836 34 H 0.045 0.955 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.993 24.505 0.786 27.294 hybrid contribution 1.090 -2.451 0.281 2.697 sum -10.903 22.055 1.067 24.626 Atomic orbital electron populations 1.20740 0.76545 1.07356 1.07015 1.29099 0.99460 0.78703 0.96597 1.74372 0.96349 1.26968 1.19941 1.74320 1.12755 1.10143 1.17084 1.28034 0.85402 0.91405 0.99653 1.20389 0.87488 0.96984 0.92130 1.60378 1.07491 1.51026 1.11480 1.22210 0.92267 0.95196 0.97460 1.21558 0.88343 0.91144 0.95463 0.92070 1.22582 0.98251 0.93191 0.99948 1.22862 0.97532 0.97715 0.98166 1.22677 0.88180 0.94162 0.98315 1.48513 1.13912 1.08397 1.63919 1.19739 0.88399 0.81137 0.77155 1.90667 1.36808 1.72339 1.44071 1.23322 0.99294 0.98959 1.05676 1.85528 1.22726 1.03073 1.80783 1.23162 0.99907 0.99245 1.47160 0.89950 1.26124 1.02206 0.96669 0.94105 1.70177 1.35063 1.09089 1.40395 0.85012 0.76876 0.76966 0.79206 1.18655 1.20396 1.18609 1.84826 1.17761 1.38953 1.69801 0.86224 0.86960 0.86095 0.90687 0.85026 0.83553 0.95496 0.89421 0.89363 0.89061 0.90521 0.87111 0.89999 0.89754 0.87649 0.87765 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.17 3.03 8.48 88.34 0.75 3.78 16 3 N -0.33 -7.94 12.22 -165.49 -2.02 -9.97 16 4 N -0.30 -7.61 12.22 -165.50 -2.02 -9.63 16 5 C 0.17 3.58 7.99 88.34 0.71 4.28 16 6 C 0.16 2.79 6.30 85.56 0.54 3.33 16 7 N -0.67 -12.41 6.25 -517.92 -3.23 -15.64 16 8 C 0.06 1.28 5.07 86.30 0.44 1.71 16 9 C 0.14 3.02 3.12 45.34 0.14 3.16 16 10 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 11 C -0.10 -1.47 6.29 31.87 0.20 -1.27 16 12 C -0.12 -1.55 7.09 32.07 0.23 -1.33 16 13 C 0.09 1.58 6.74 86.85 0.59 2.17 16 14 N -0.61 -16.11 3.06 -788.06 -2.41 -18.53 16 15 C 0.55 20.37 7.68 87.66 0.67 21.04 16 16 O -0.56 -25.45 14.66 -3.04 -0.04 -25.50 16 17 C -0.12 -4.85 5.09 71.24 0.36 -4.49 16 18 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 19 C -0.55 -31.09 9.50 67.95 0.65 -30.44 16 20 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -55.72 13.22 21.65 0.29 -55.43 16 23 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 O -0.23 -4.71 10.87 -3.74 -0.04 -4.75 16 28 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.35 6.48 8.78 -89.69 -0.79 5.69 16 34 H 0.03 0.79 6.57 -2.39 -0.02 0.77 16 35 H 0.09 1.76 8.03 -2.39 -0.02 1.74 16 36 H 0.09 1.20 7.78 -2.39 -0.02 1.18 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.45 7.47 -2.39 -0.02 1.44 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 43 H 0.10 3.82 7.95 -2.40 -0.02 3.81 16 44 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -81.96 385.58 -1.91 -83.87 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.24 Total: 16.06 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 6.48 Total: 3.61 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -9.41 Total: -109.20 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.09 Total: -30.25 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -81.96 -1.91 -83.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499875012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.282 kcal (2) G-P(sol) polarization free energy of solvation -81.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds