Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47499 * 2 1 4 4 N 1.31244 * 124.05718 * 270.17649 * 3 2 1 5 5 N 1.27340 * 120.03899 * 180.33561 * 4 3 2 6 6 S 1.56641 * 109.73895 * 359.71518 * 5 4 3 7 7 C 1.38251 * 124.05614 * 89.99751 * 3 2 1 8 8 C 1.47166 * 128.47359 * 0.02562 * 7 3 2 9 9 O 1.21620 * 120.00359 * 359.70524 * 8 7 3 10 10 N 1.34783 * 119.99776 * 179.69945 * 8 7 3 11 11 C 1.46502 * 120.00037 * 174.64751 * 10 8 7 12 12 C 1.52993 * 109.49687 * 302.65520 * 11 10 8 13 13 O 1.42905 * 109.47093 * 301.91360 * 12 11 10 14 14 C 1.53049 * 109.49558 * 62.71737 * 11 10 8 15 15 C 1.53037 * 109.53712 * 58.61979 * 14 11 10 16 16 C 1.53188 * 109.31494 * 61.36447 * 15 14 11 17 17 N 1.46928 * 108.77574 * 305.36717 * 16 15 14 18 18 C 1.36939 * 120.62897 * 233.33441 * 17 16 15 19 19 H 1.07997 * 120.00356 * 149.60009 * 18 17 16 20 20 C 1.38815 * 119.99688 * 329.60518 * 18 17 16 21 21 N 1.31618 * 119.99784 * 161.53208 * 20 18 17 22 22 Si 1.86798 * 120.00026 * 341.53316 * 20 18 17 23 23 H 1.48497 * 109.47177 * 92.63300 * 22 20 18 24 24 H 1.48505 * 109.46850 * 212.63147 * 22 20 18 25 25 H 1.48491 * 109.47265 * 332.62971 * 22 20 18 26 26 C 1.46922 * 118.74058 * 53.60138 * 17 16 15 27 27 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46990 * 299.99658 * 1 2 3 29 29 H 1.08997 * 109.47363 * 59.99610 * 1 2 3 30 30 H 1.09003 * 109.47172 * 239.99828 * 2 1 3 31 31 H 1.09001 * 109.47369 * 119.99907 * 2 1 3 32 32 H 0.96998 * 119.99694 * 354.64131 * 10 8 7 33 33 H 1.09007 * 109.47637 * 61.91559 * 12 11 10 34 34 H 1.09001 * 109.47154 * 181.91630 * 12 11 10 35 35 H 0.96699 * 114.00020 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.45728 * 298.59507 * 14 11 10 37 37 H 1.08997 * 109.44728 * 178.63310 * 14 11 10 38 38 H 1.08999 * 109.49963 * 301.41110 * 15 14 11 39 39 H 1.09000 * 109.49498 * 181.31836 * 15 14 11 40 40 H 1.09001 * 109.58751 * 185.57395 * 16 15 14 41 41 H 1.09006 * 109.58721 * 65.15215 * 16 15 14 42 42 H 0.97001 * 120.00183 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58553 * 66.18483 * 26 17 16 44 44 H 1.09005 * 109.58681 * 186.60791 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2743 2.1148 -1.0873 5 7 2.7041 3.3101 -0.9981 6 16 2.8497 3.7088 0.5097 7 6 2.2905 2.1507 1.1454 8 6 2.1436 1.7340 2.5492 9 8 1.7431 0.6163 2.8131 10 7 2.4530 2.5910 3.5424 11 6 2.1968 2.2201 4.9363 12 6 0.7128 1.8926 5.1131 13 8 -0.0733 3.0232 4.7309 14 6 3.0374 0.9943 5.3015 15 6 4.5203 1.3103 5.0936 16 6 4.9259 2.4661 6.0135 17 7 4.0268 3.6024 5.7697 18 6 4.5316 4.8406 5.4746 19 1 3.9718 5.5159 4.8445 20 6 5.7629 5.2279 5.9853 21 7 6.4170 6.2300 5.4372 22 14 6.4916 4.3268 7.4503 23 1 7.3760 3.2349 6.9700 24 1 7.2814 5.2777 8.2734 25 1 5.3968 3.7517 8.2723 26 6 2.5761 3.3862 5.8544 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.8454 3.4533 3.3342 33 1 0.4516 1.0399 4.4863 34 1 0.5162 1.6497 6.1573 35 1 -1.0266 2.8869 4.8179 36 1 2.7521 0.1560 4.6659 37 1 2.8645 0.7337 6.3456 38 1 4.6895 1.5952 4.0552 39 1 5.1167 0.4295 5.3314 40 1 5.9533 2.7605 5.7991 41 1 4.8432 2.1515 7.0538 42 1 7.2773 6.5008 5.7942 43 1 2.3017 3.1466 6.8818 44 1 2.0530 4.2877 5.5351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501334353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = 10.982261 kcal Electronic energy + Delta-G solvation = -29195.982582 eV Core-core repulsion = 25276.875983 eV Total energy + Delta-G solvation = -3919.106599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03861 -40.19593 -37.78400 -36.29984 -34.49481 -34.04274 -32.61814 -31.07587 -30.89540 -29.87538 -27.41575 -25.88256 -25.28200 -24.13871 -22.74108 -22.14085 -21.30601 -20.21331 -19.22980 -18.22375 -17.48185 -17.14032 -16.84544 -16.03202 -15.55513 -15.42253 -15.12348 -14.79321 -14.43054 -14.22678 -13.95126 -13.79898 -13.71435 -13.38690 -13.02978 -12.98355 -12.57251 -12.42105 -12.30950 -12.13063 -11.88956 -11.61129 -11.50168 -11.49079 -11.02363 -10.88279 -10.77378 -10.35283 -10.28750 -10.10135 -10.04240 -9.85163 -9.78056 -9.72400 -9.58528 -9.46534 -8.79754 -8.68970 -7.05890 -6.04480 -3.45698 -0.24078 0.85651 1.50329 1.93239 3.07422 3.15243 3.26383 3.42849 3.44755 3.84620 4.28037 4.44871 4.52057 4.72589 4.81576 5.05674 5.16652 5.18555 5.21237 5.25960 5.34661 5.40074 5.51308 5.62975 5.68228 5.71890 5.79464 5.92967 6.00683 6.05678 6.11606 6.14567 6.21132 6.33217 6.47888 6.55065 6.62534 6.73117 6.84748 7.58928 7.68929 7.72760 7.87119 8.21955 8.23183 8.82326 9.61077 9.98341 11.10771 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004435 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.895482 B = 6312.503710 C = 7294.443137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C 0.095 3.905 4 N -0.255 5.255 5 N -0.265 5.265 6 S 0.441 5.559 7 C -0.287 4.287 8 C 0.604 3.396 9 O -0.528 6.528 10 N -0.680 5.680 11 C 0.167 3.833 12 C 0.065 3.935 13 O -0.565 6.565 14 C -0.122 4.122 15 C -0.129 4.129 16 C 0.123 3.877 17 N -0.605 5.605 18 C -0.268 4.268 19 H 0.086 0.914 20 C 0.030 3.970 21 N -0.905 5.905 22 Si 0.885 3.115 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.149 3.851 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.409 0.591 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.373 0.627 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.040 0.960 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 -11.162 -5.281 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.053 4.053 4 N -0.120 5.120 5 N -0.246 5.246 6 S 0.577 5.423 7 C -0.428 4.428 8 C 0.388 3.612 9 O -0.407 6.407 10 N -0.330 5.330 11 C 0.079 3.921 12 C -0.014 4.014 13 O -0.369 6.369 14 C -0.161 4.161 15 C -0.169 4.169 16 C -0.002 4.002 17 N -0.328 5.328 18 C -0.396 4.396 19 H 0.104 0.896 20 C -0.170 4.170 21 N -0.547 5.547 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.022 3.978 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.245 0.755 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.219 0.781 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.664 -9.960 -6.314 15.899 hybrid contribution -0.113 -1.371 1.458 2.004 sum -10.776 -11.330 -4.856 16.373 Atomic orbital electron populations 1.21644 0.93608 1.02353 1.02121 1.20242 0.96734 0.86658 1.04792 1.22906 0.97565 0.99607 0.85175 1.70602 1.14124 0.99213 1.28099 1.78786 1.18634 1.10670 1.16477 1.83040 1.44728 1.14038 1.00455 1.27920 1.14190 1.00302 1.00368 1.16399 0.78093 0.84920 0.81794 1.90688 1.47598 1.19497 1.82878 1.45740 1.61807 1.19921 1.05512 1.21038 0.91911 0.97896 0.81244 1.22620 0.90914 0.88992 0.98897 1.86516 1.20892 1.39307 1.90178 1.21799 0.95588 0.97139 1.01539 1.21924 0.94910 0.98673 1.01362 1.21394 0.95341 0.87721 0.95770 1.44385 0.99611 1.06145 1.82685 1.18858 1.03716 0.91331 1.25681 0.89616 1.25332 0.97459 0.96132 0.98029 1.69802 1.14482 1.29635 1.40760 0.86919 0.78717 0.78170 0.84669 1.21614 1.23169 1.19513 1.21148 0.85932 0.95457 0.95243 0.91541 0.92189 0.92728 0.89809 0.87609 0.75464 0.91598 0.93095 0.78143 0.90261 0.91576 0.91987 0.92553 0.90954 0.95597 0.92653 0.94253 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.04 -0.49 5.95 -27.89 -0.17 -0.65 16 3 C 0.10 1.30 6.25 -82.84 -0.52 0.79 16 4 N -0.26 -3.78 11.54 33.42 0.39 -3.40 16 5 N -0.27 -3.94 12.51 60.35 0.75 -3.19 16 6 S 0.44 5.94 23.06 -107.50 -2.48 3.46 16 7 C -0.29 -4.06 6.80 -35.95 -0.24 -4.31 16 8 C 0.60 9.04 7.21 -12.63 -0.09 8.95 16 9 O -0.53 -8.13 11.17 5.26 0.06 -8.08 16 10 N -0.68 -10.55 4.01 -48.64 -0.20 -10.74 16 11 C 0.17 2.55 0.45 -131.70 -0.06 2.49 16 12 C 0.06 0.84 5.66 37.15 0.21 1.05 16 13 O -0.56 -7.16 13.01 -35.23 -0.46 -7.62 16 14 C -0.12 -1.84 4.51 -26.69 -0.12 -1.96 16 15 C -0.13 -2.19 5.93 -26.61 -0.16 -2.34 16 16 C 0.12 2.49 4.19 -3.71 -0.02 2.47 16 17 N -0.60 -12.95 2.60 -172.32 -0.45 -13.40 16 18 C -0.27 -6.82 10.02 -15.06 -0.15 -6.97 16 19 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 20 C 0.03 0.83 5.25 -17.43 -0.09 0.73 16 21 N -0.90 -26.26 13.97 55.49 0.78 -25.48 16 22 Si 0.88 21.40 24.35 -169.99 -4.14 17.26 16 23 H -0.29 -6.79 6.67 56.52 0.38 -6.42 16 24 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.27 -6.40 6.59 56.52 0.37 -6.03 16 26 C 0.15 2.67 5.03 -3.72 -0.02 2.66 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.11 1.26 6.47 -51.93 -0.34 0.92 16 32 H 0.41 6.74 7.87 -40.82 -0.32 6.42 16 33 H 0.07 0.88 6.22 -51.93 -0.32 0.56 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.37 3.02 9.12 45.56 0.42 3.44 16 36 H 0.08 1.19 6.23 -51.93 -0.32 0.87 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.11 7.53 -51.93 -0.39 0.72 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.62 4.77 -51.93 -0.25 1.38 16 41 H 0.03 0.52 6.97 -51.93 -0.36 0.16 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -30.17 358.13 -6.69 -36.86 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.28 Total: 7.05 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.06 Total: 1.89 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 1.27 Total: -56.21 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.40 Total: -15.70 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -2.48 Total: 3.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.17 -6.69 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501334353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.838 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds