Wall clock time and date at job start Sat Apr 11 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47499 * 2 1 4 4 N 1.31244 * 124.05718 * 270.17649 * 3 2 1 5 5 N 1.27340 * 120.03899 * 180.33561 * 4 3 2 6 6 S 1.56641 * 109.73895 * 359.71518 * 5 4 3 7 7 C 1.38251 * 124.05614 * 89.99751 * 3 2 1 8 8 C 1.47166 * 128.47359 * 0.02562 * 7 3 2 9 9 O 1.21620 * 120.00359 * 359.70524 * 8 7 3 10 10 N 1.34783 * 119.99776 * 179.69945 * 8 7 3 11 11 C 1.46502 * 120.00037 * 174.64751 * 10 8 7 12 12 C 1.52993 * 109.49687 * 302.65520 * 11 10 8 13 13 O 1.42905 * 109.47093 * 301.91360 * 12 11 10 14 14 C 1.53049 * 109.49558 * 62.71737 * 11 10 8 15 15 C 1.53037 * 109.53712 * 58.61979 * 14 11 10 16 16 C 1.53188 * 109.31494 * 61.36447 * 15 14 11 17 17 N 1.46928 * 108.77574 * 305.36717 * 16 15 14 18 18 C 1.36939 * 120.62897 * 233.33441 * 17 16 15 19 19 H 1.07997 * 120.00356 * 149.60009 * 18 17 16 20 20 C 1.38815 * 119.99688 * 329.60518 * 18 17 16 21 21 N 1.31618 * 119.99784 * 161.53208 * 20 18 17 22 22 Si 1.86798 * 120.00026 * 341.53316 * 20 18 17 23 23 H 1.48497 * 109.47177 * 92.63300 * 22 20 18 24 24 H 1.48505 * 109.46850 * 212.63147 * 22 20 18 25 25 H 1.48491 * 109.47265 * 332.62971 * 22 20 18 26 26 C 1.46922 * 118.74058 * 53.60138 * 17 16 15 27 27 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46990 * 299.99658 * 1 2 3 29 29 H 1.08997 * 109.47363 * 59.99610 * 1 2 3 30 30 H 1.09003 * 109.47172 * 239.99828 * 2 1 3 31 31 H 1.09001 * 109.47369 * 119.99907 * 2 1 3 32 32 H 0.96998 * 119.99694 * 354.64131 * 10 8 7 33 33 H 1.09007 * 109.47637 * 61.91559 * 12 11 10 34 34 H 1.09001 * 109.47154 * 181.91630 * 12 11 10 35 35 H 0.96699 * 114.00020 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.45728 * 298.59507 * 14 11 10 37 37 H 1.08997 * 109.44728 * 178.63310 * 14 11 10 38 38 H 1.08999 * 109.49963 * 301.41110 * 15 14 11 39 39 H 1.09000 * 109.49498 * 181.31836 * 15 14 11 40 40 H 1.09001 * 109.58751 * 185.57395 * 16 15 14 41 41 H 1.09006 * 109.58721 * 65.15215 * 16 15 14 42 42 H 0.97001 * 120.00183 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58553 * 66.18483 * 26 17 16 44 44 H 1.09005 * 109.58681 * 186.60791 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2743 2.1148 -1.0873 5 7 2.7041 3.3101 -0.9981 6 16 2.8497 3.7088 0.5097 7 6 2.2905 2.1507 1.1454 8 6 2.1436 1.7340 2.5492 9 8 1.7431 0.6163 2.8131 10 7 2.4530 2.5910 3.5424 11 6 2.1968 2.2201 4.9363 12 6 0.7128 1.8926 5.1131 13 8 -0.0733 3.0232 4.7309 14 6 3.0374 0.9943 5.3015 15 6 4.5203 1.3103 5.0936 16 6 4.9259 2.4661 6.0135 17 7 4.0268 3.6024 5.7697 18 6 4.5316 4.8406 5.4746 19 1 3.9718 5.5159 4.8445 20 6 5.7629 5.2279 5.9853 21 7 6.4170 6.2300 5.4372 22 14 6.4916 4.3268 7.4503 23 1 7.3760 3.2349 6.9700 24 1 7.2814 5.2777 8.2734 25 1 5.3968 3.7517 8.2723 26 6 2.5761 3.3862 5.8544 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.8454 3.4533 3.3342 33 1 0.4516 1.0399 4.4863 34 1 0.5162 1.6497 6.1573 35 1 -1.0266 2.8869 4.8179 36 1 2.7521 0.1560 4.6659 37 1 2.8645 0.7337 6.3456 38 1 4.6895 1.5952 4.0552 39 1 5.1167 0.4295 5.3314 40 1 5.9533 2.7605 5.7991 41 1 4.8432 2.1515 7.0538 42 1 7.2773 6.5008 5.7942 43 1 2.3017 3.1466 6.8818 44 1 2.0530 4.2877 5.5351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501334353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:23 Heat of formation + Delta-G solvation = -12.155375 kcal Electronic energy + Delta-G solvation = -29196.985905 eV Core-core repulsion = 25276.875983 eV Total energy + Delta-G solvation = -3920.109922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.16008 -41.41227 -39.10688 -37.44057 -35.66951 -35.26089 -34.18522 -32.73668 -32.18475 -30.99111 -28.55477 -27.39966 -26.74865 -25.11432 -23.92100 -23.62446 -22.71770 -21.44721 -20.45029 -19.30170 -18.77612 -18.60268 -18.14552 -17.20341 -17.14549 -16.80084 -16.28910 -15.96588 -15.56916 -15.49414 -15.21182 -15.11794 -15.08709 -14.75231 -14.40670 -14.06738 -13.98776 -13.70698 -13.54003 -13.32786 -13.27791 -13.05648 -12.93363 -12.49683 -12.38980 -12.21382 -11.98611 -11.88080 -11.65763 -11.48172 -11.45369 -11.28498 -11.13583 -10.92652 -10.82812 -10.73044 -10.49791 -9.98771 -8.86986 -8.12425 -5.48195 -1.36766 -0.23584 0.38734 0.82968 1.33696 1.45017 1.52588 1.91363 1.97252 2.45353 2.79160 3.10651 3.25998 3.35929 3.47076 3.58910 3.95964 4.00123 4.11440 4.19138 4.25540 4.35350 4.38225 4.43068 4.59751 4.62986 4.77087 4.79949 4.84202 4.84826 5.01441 5.02617 5.04009 5.11946 5.16091 5.24354 5.33321 5.38691 5.56703 5.92120 6.17438 6.40413 6.56110 6.92074 6.97249 7.03393 7.64095 8.05208 9.06501 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004435 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.895482 B = 6312.503710 C = 7294.443137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 C 0.099 3.901 4 N -0.268 5.268 5 N -0.281 5.281 6 S 0.459 5.541 7 C -0.300 4.300 8 C 0.609 3.391 9 O -0.530 6.530 10 N -0.685 5.685 11 C 0.166 3.834 12 C 0.073 3.927 13 O -0.582 6.582 14 C -0.116 4.116 15 C -0.122 4.122 16 C 0.119 3.881 17 N -0.614 5.614 18 C -0.243 4.243 19 H 0.060 0.940 20 C -0.027 4.027 21 N -0.954 5.954 22 Si 0.941 3.059 23 H -0.280 1.280 24 H -0.318 1.318 25 H -0.258 1.258 26 C 0.151 3.849 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.393 0.607 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.259 0.741 43 H 0.054 0.946 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 -13.775 -4.569 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.084 4.084 3 C -0.049 4.049 4 N -0.133 5.133 5 N -0.262 5.262 6 S 0.596 5.404 7 C -0.441 4.441 8 C 0.392 3.608 9 O -0.409 6.409 10 N -0.335 5.335 11 C 0.079 3.921 12 C -0.006 4.006 13 O -0.389 6.389 14 C -0.154 4.154 15 C -0.161 4.161 16 C -0.006 4.006 17 N -0.339 5.339 18 C -0.372 4.372 19 H 0.078 0.922 20 C -0.222 4.222 21 N -0.599 5.599 22 Si 0.771 3.229 23 H -0.207 1.207 24 H -0.247 1.247 25 H -0.182 1.182 26 C 0.025 3.975 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.236 0.764 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.242 0.758 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.232 -12.630 -5.597 18.452 hybrid contribution 0.259 -0.544 1.174 1.320 sum -11.973 -13.174 -4.423 18.343 Atomic orbital electron populations 1.21612 0.92484 1.03601 1.01431 1.20375 0.97570 0.85124 1.05334 1.23313 0.96598 1.00420 0.84607 1.70630 1.14656 0.99295 1.28700 1.78708 1.19087 1.11035 1.17343 1.82981 1.44012 1.13747 0.99697 1.27937 1.15095 1.00721 1.00332 1.16361 0.77818 0.84744 0.81829 1.90678 1.47763 1.19461 1.82997 1.45791 1.62038 1.19697 1.05930 1.21050 0.93912 0.96691 0.80425 1.22495 0.89108 0.88783 1.00184 1.86471 1.22734 1.39409 1.90330 1.21772 0.93872 0.96905 1.02881 1.21822 0.96779 0.98001 0.99498 1.21428 0.93834 0.88240 0.97052 1.44439 1.01406 1.05153 1.82853 1.18805 1.02731 0.92265 1.23441 0.92239 1.25889 0.98478 0.97351 1.00509 1.69930 1.15155 1.32275 1.42571 0.86003 0.78251 0.76993 0.81694 1.20690 1.24706 1.18179 1.21221 0.83406 0.96192 0.96659 0.89341 0.93468 0.92759 0.88244 0.87994 0.76361 0.91625 0.90905 0.75756 0.89677 0.89625 0.93506 0.90323 0.93489 0.94583 0.93166 0.92790 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.89 71.98 0.71 -1.66 16 2 C -0.04 -0.89 5.95 29.85 0.18 -0.71 16 3 C 0.10 2.59 6.25 42.65 0.27 2.86 16 4 N -0.27 -7.74 11.54 -48.18 -0.56 -8.30 16 5 N -0.28 -8.28 12.51 37.02 0.46 -7.82 16 6 S 0.46 12.35 23.06 -56.49 -1.30 11.04 16 7 C -0.30 -8.25 6.80 24.62 0.17 -8.08 16 8 C 0.61 17.34 7.21 86.59 0.62 17.97 16 9 O -0.53 -15.15 11.17 -4.09 -0.05 -15.20 16 10 N -0.69 -20.46 4.01 -426.05 -1.71 -22.17 16 11 C 0.17 4.70 0.45 3.68 0.00 4.70 16 12 C 0.07 1.67 5.66 71.98 0.41 2.08 16 13 O -0.58 -13.36 13.01 -148.98 -1.94 -15.30 16 14 C -0.12 -3.11 4.51 30.62 0.14 -2.97 16 15 C -0.12 -3.81 5.93 30.67 0.18 -3.63 16 16 C 0.12 4.59 4.19 86.36 0.36 4.96 16 17 N -0.61 -25.70 2.60 -699.10 -1.82 -27.52 16 18 C -0.24 -12.52 10.02 84.03 0.84 -11.68 16 19 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 20 C -0.03 -1.48 5.25 84.86 0.45 -1.04 16 21 N -0.95 -57.14 13.97 21.65 0.30 -56.83 16 22 Si 0.94 44.39 24.35 68.60 1.67 46.06 16 23 H -0.28 -12.66 6.67 99.48 0.66 -12.00 16 24 H -0.32 -15.61 7.11 99.48 0.71 -14.90 16 25 H -0.26 -11.45 6.59 99.48 0.66 -10.80 16 26 C 0.15 5.14 5.03 86.36 0.43 5.58 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 2.21 6.47 -2.39 -0.02 2.19 16 32 H 0.40 13.18 7.87 -92.71 -0.73 12.45 16 33 H 0.07 1.54 6.22 -2.38 -0.01 1.52 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.39 5.31 9.12 -74.06 -0.68 4.63 16 36 H 0.08 2.25 6.23 -2.39 -0.01 2.24 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.60 7.53 -2.39 -0.02 1.58 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 2.06 4.77 -2.39 -0.01 2.04 16 41 H 0.04 1.34 6.97 -2.38 -0.02 1.32 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 2.39 7.70 -2.38 -0.02 2.38 16 Total: -1.00 -65.00 358.13 -0.61 -65.61 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.44 Total: 22.06 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 4.76 Total: 8.37 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -3.32 Total: -122.65 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.98 Total: -30.50 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.67 Total: 46.06 kcal Atomic # 16 Polarization: 12.35 SS G_CDS: -1.30 Total: 11.04 kcal Total: -65.00 -0.61 -65.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501334353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.454 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds