Wall clock time and date at job start Sat Apr 11 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30277 * 126.28001 * 2 1 4 4 N 1.28663 * 109.38444 * 179.72894 * 3 2 1 5 5 C 1.30283 * 109.37775 * 0.44184 * 4 3 2 6 6 C 1.50697 * 126.28376 * 179.82674 * 5 4 3 7 7 N 1.46897 * 109.47186 * 89.69125 * 6 5 4 8 8 C 1.46898 * 110.99952 * 175.33034 * 7 6 5 9 9 C 1.52998 * 112.84714 * 290.69534 * 8 7 6 10 10 N 1.46496 * 109.47609 * 312.17141 * 9 8 7 11 11 C 1.34769 * 120.00455 * 174.70375 * 10 9 8 12 12 O 1.21282 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00244 * 180.02562 * 11 10 9 14 14 S 1.81005 * 109.47104 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00025 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99592 * 359.97438 * 15 14 13 17 17 C 1.38791 * 120.00107 * 179.97438 * 15 14 13 18 18 N 1.31636 * 120.00214 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00160 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47303 * 60.00020 * 19 17 15 21 21 H 1.48499 * 109.47400 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47267 * 299.99769 * 19 17 15 23 23 C 1.53783 * 113.61137 * 159.39272 * 8 7 6 24 24 C 1.53785 * 87.08121 * 220.01411 * 23 8 7 25 25 C 1.53780 * 87.07942 * 25.43277 * 24 23 8 26 26 O 1.34360 * 126.28463 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47721 * 270.00011 * 1 2 3 28 28 H 1.09001 * 109.47232 * 30.01018 * 1 2 3 29 29 H 1.09007 * 109.46943 * 149.99898 * 1 2 3 30 30 H 1.09001 * 109.46957 * 329.69031 * 6 5 4 31 31 H 1.08997 * 109.46870 * 209.69403 * 6 5 4 32 32 H 1.00900 * 110.99629 * 299.28182 * 7 6 5 33 33 H 1.08997 * 109.46854 * 72.17548 * 9 8 7 34 34 H 1.09008 * 109.46862 * 192.17306 * 9 8 7 35 35 H 0.97006 * 119.99796 * 354.71436 * 10 9 8 36 36 H 1.09005 * 109.46837 * 299.99666 * 13 11 10 37 37 H 1.08989 * 109.47159 * 60.00047 * 13 11 10 38 38 H 0.96998 * 120.00574 * 179.97438 * 18 17 15 39 39 H 1.08992 * 113.61944 * 334.56651 * 23 8 7 40 40 H 1.09007 * 113.61232 * 105.47306 * 23 8 7 41 41 H 1.08994 * 113.61917 * 270.88931 * 24 23 8 42 42 H 1.08993 * 113.61457 * 139.97696 * 24 23 8 43 43 H 1.09000 * 113.61853 * 220.01775 * 25 24 23 44 44 H 1.09011 * 113.61551 * 89.11029 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6763 0.0057 5 6 3.5654 -0.6253 0.0001 6 6 4.8177 -1.4636 0.0002 7 7 5.2245 -1.7360 1.3852 8 6 6.3791 -2.6433 1.4259 9 6 6.0331 -4.0654 0.9803 10 7 4.8150 -4.5085 1.6630 11 6 4.2580 -5.6940 1.3460 12 8 4.7655 -6.3945 0.4958 13 6 3.0046 -6.1495 2.0479 14 16 2.5084 -7.7679 1.4071 15 6 1.0624 -8.0495 2.3737 16 1 0.7446 -7.3131 3.0970 17 6 0.3319 -9.2176 2.2057 18 7 0.7190 -10.1149 1.3238 19 14 -1.2007 -9.5164 3.2310 20 1 -2.1869 -8.4365 2.9736 21 1 -1.7949 -10.8266 2.8628 22 1 -0.8391 -9.5236 4.6713 23 6 7.1632 -2.5834 2.7475 24 6 8.4433 -2.6866 1.9015 25 6 7.6351 -2.0731 0.7460 26 8 2.3021 -1.0831 0.0005 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5139 30 1 5.6147 -0.9262 -0.5136 31 1 4.6245 -2.4053 -0.5137 32 1 5.4208 -0.8786 1.8796 33 1 5.8710 -4.0791 -0.0975 34 1 6.8552 -4.7354 1.2327 35 1 4.4092 -3.9484 2.3432 36 1 3.1951 -6.2259 3.1185 37 1 2.2069 -5.4282 1.8714 38 1 0.2087 -10.9314 1.2065 39 1 7.0622 -1.6336 3.2725 40 1 6.9963 -3.4453 3.3937 41 1 8.7620 -3.7122 1.7151 42 1 9.2530 -2.0484 2.2551 43 1 7.8490 -2.5228 -0.2236 44 1 7.6630 -0.9836 0.7239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501916557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:26 Heat of formation + Delta-G solvation = 24.215623 kcal Electronic energy + Delta-G solvation = -26899.823390 eV Core-core repulsion = 22981.290632 eV Total energy + Delta-G solvation = -3918.532757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.43945 -40.57616 -38.70133 -36.37155 -35.28699 -34.03373 -32.78373 -32.41992 -29.89773 -29.18247 -26.94404 -26.55726 -25.80205 -25.40144 -23.15439 -22.82326 -22.23034 -20.25823 -19.28562 -17.85082 -17.64183 -17.54525 -16.74369 -16.32758 -16.13604 -15.40064 -15.25056 -15.09142 -14.90285 -14.79595 -14.60715 -13.91609 -13.71872 -13.50030 -13.44786 -13.15334 -13.01362 -12.73386 -12.66782 -12.62002 -12.48872 -12.12393 -12.04135 -11.76189 -11.51039 -11.17524 -11.04855 -11.03621 -11.03184 -10.76717 -10.72082 -9.81685 -9.78192 -9.38991 -9.05523 -9.00085 -8.80761 -8.22334 -6.48482 -6.20774 -3.91038 0.86897 1.97991 2.10324 3.02808 3.14339 3.23537 3.26916 3.29619 3.40839 3.63587 3.83737 4.04061 4.08614 4.21498 4.23217 4.27542 4.40769 4.50259 4.81585 4.95179 4.96875 4.99574 5.08696 5.14202 5.21150 5.22617 5.24940 5.28234 5.35356 5.43177 5.51809 5.54003 5.56559 5.61609 5.66453 5.77011 5.88600 5.93286 6.18210 6.31828 6.67025 6.77705 7.60099 7.82512 8.04000 8.35939 8.67054 9.24417 10.86605 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008871 B = 0.003101 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.511603 B = 9026.512231 C =11585.895071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.294 5.294 4 N -0.285 5.285 5 C 0.171 3.829 6 C 0.155 3.845 7 N -0.670 5.670 8 C 0.085 3.915 9 C 0.151 3.849 10 N -0.725 5.725 11 C 0.531 3.469 12 O -0.523 6.523 13 C -0.151 4.151 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.168 4.168 26 O -0.211 6.211 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.353 0.647 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.405 0.595 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.269 0.731 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.525 21.961 0.058 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.043 4.043 3 N -0.142 5.142 4 N -0.133 5.133 5 C -0.041 4.041 6 C 0.025 3.975 7 N -0.303 5.303 8 C -0.007 4.007 9 C 0.026 3.974 10 N -0.380 5.380 11 C 0.317 3.683 12 O -0.398 6.398 13 C -0.302 4.302 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.504 5.504 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.167 4.167 24 C -0.176 4.176 25 C -0.208 4.208 26 O -0.089 6.089 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.173 0.827 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.240 0.760 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.224 21.334 -1.365 23.697 hybrid contribution -1.484 0.364 1.683 2.273 sum 8.740 21.698 0.318 23.394 Atomic orbital electron populations 1.20405 0.80119 1.05872 1.05517 1.28091 0.98005 0.79565 0.98674 1.74383 0.95964 1.25614 1.18259 1.74356 1.12625 1.09188 1.17151 1.27744 0.85429 0.91184 0.99757 1.20223 0.86820 0.98283 0.92197 1.60105 1.38254 1.19274 1.12641 1.22645 0.86844 0.92973 0.98197 1.20958 0.88314 0.90797 0.97311 1.45779 1.28015 1.21002 1.43235 1.20297 0.85135 0.80283 0.82592 1.90697 1.63024 1.53936 1.32153 1.23505 0.97081 1.06241 1.03365 1.85364 1.32595 1.12611 1.52815 1.22832 1.12079 1.07840 1.25623 0.91020 1.24979 0.98020 0.94961 0.95570 1.70009 1.38997 1.08715 1.32635 0.86238 0.81619 0.77630 0.80095 1.19959 1.20821 1.19936 1.23128 0.94770 1.03267 0.95533 1.22758 0.96670 1.01843 0.96329 1.23643 0.96711 1.00983 0.99415 1.84860 1.17364 1.37994 1.68710 0.88073 0.87577 0.88502 0.89790 0.87295 0.82662 0.91378 0.90792 0.75963 0.89354 0.89351 0.92154 0.89523 0.90160 0.89444 0.90919 0.90528 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.00 0.38 0.00 16 2 C 0.17 1.82 8.48 -12.94 -0.11 1.71 16 3 N -0.29 -3.79 12.22 32.55 0.40 -3.39 16 4 N -0.29 -3.63 12.22 32.55 0.40 -3.24 16 5 C 0.17 1.92 8.03 -12.94 -0.10 1.81 16 6 C 0.15 1.31 5.92 -4.98 -0.03 1.28 16 7 N -0.67 -5.15 5.76 -100.40 -0.58 -5.73 16 8 C 0.08 0.62 0.80 -130.79 -0.10 0.51 16 9 C 0.15 1.61 4.62 -4.04 -0.02 1.59 16 10 N -0.73 -9.50 5.38 -60.30 -0.32 -9.83 16 11 C 0.53 9.79 7.85 -10.99 -0.09 9.70 16 12 O -0.52 -11.67 15.86 5.56 0.09 -11.59 16 13 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 16 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 19 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 C -0.13 -0.83 7.33 -25.92 -0.19 -1.02 16 24 C -0.14 -0.81 7.73 -25.92 -0.20 -1.01 16 25 C -0.17 -0.98 6.44 -25.92 -0.17 -1.15 16 26 O -0.21 -2.59 10.87 5.38 0.06 -2.53 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.57 7.54 -51.93 -0.39 0.17 16 31 H 0.11 1.00 6.97 -51.93 -0.36 0.64 16 32 H 0.35 2.45 8.51 -39.29 -0.33 2.12 16 33 H 0.07 0.79 7.40 -51.93 -0.38 0.40 16 34 H 0.07 0.82 7.36 -51.92 -0.38 0.43 16 35 H 0.41 4.68 8.10 -40.82 -0.33 4.35 16 36 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.09 0.48 7.95 -51.93 -0.41 0.07 16 40 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.09 0.55 7.67 -51.93 -0.40 0.15 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 44 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -36.30 386.65 -7.19 -43.48 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.34 Total: 2.31 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.21 Total: -2.37 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.63 Total: -47.60 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.15 Total: -14.12 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.30 -7.19 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501916557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.700 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds