Wall clock time and date at job start Sat Apr 11 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30493 * 125.65484 * 2 1 4 4 C 1.34132 * 109.26007 * 180.29184 * 3 2 1 5 5 C 1.34675 * 108.01601 * 359.73026 * 4 3 2 6 6 N 1.35053 * 125.64597 * 179.82933 * 2 1 3 7 7 C 1.46499 * 126.39601 * 359.97164 * 6 2 1 8 8 C 1.50701 * 109.46992 * 84.71660 * 7 6 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47452 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.47149 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00006 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99822 * 0.02562 * 15 14 13 17 17 C 1.50690 * 120.00203 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47220 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00092 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99945 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99923 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00121 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99777 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47464 * 59.99938 * 23 21 19 25 25 H 1.48496 * 109.47099 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46954 * 299.99936 * 23 21 19 27 27 H 1.09000 * 109.47221 * 270.17745 * 1 2 3 28 28 H 1.09007 * 109.46854 * 30.17396 * 1 2 3 29 29 H 1.09001 * 109.47535 * 150.17412 * 1 2 3 30 30 H 1.08002 * 125.99344 * 179.72408 * 4 3 2 31 31 H 1.08004 * 126.58696 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47391 * 324.71651 * 7 6 2 33 33 H 1.09001 * 109.46813 * 204.71707 * 7 6 2 34 34 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47487 * 300.00114 * 11 10 8 36 36 H 1.09002 * 109.47182 * 60.00342 * 11 10 8 37 37 H 1.09001 * 109.47289 * 299.99909 * 12 11 10 38 38 H 1.09002 * 109.47153 * 59.99993 * 12 11 10 39 39 H 1.08998 * 109.47061 * 300.00668 * 13 12 11 40 40 H 1.09002 * 109.46668 * 60.00355 * 13 12 11 41 41 H 0.96998 * 119.99903 * 0.02562 * 14 13 12 42 42 H 1.09001 * 109.47230 * 299.99921 * 17 15 14 43 43 H 1.08992 * 109.47324 * 60.00064 * 17 15 14 44 44 H 0.96996 * 119.99967 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0603 0.0000 4 6 3.5544 0.6817 -0.0064 5 6 3.5925 -0.6645 -0.0046 6 7 2.2940 -1.0975 0.0033 7 6 1.8423 -2.4911 0.0080 8 6 1.5624 -2.9332 -1.4052 9 8 1.7248 -2.1604 -2.3258 10 7 1.1327 -4.1877 -1.6462 11 6 0.8612 -4.6176 -3.0201 12 6 0.3893 -6.0730 -3.0152 13 6 0.1051 -6.5219 -4.4501 14 7 -0.3461 -7.9157 -4.4454 15 6 -0.6571 -8.5273 -5.6054 16 8 -0.5629 -7.9239 -6.6533 17 6 -1.1218 -9.9607 -5.6006 18 16 -1.4579 -10.4918 -7.2980 19 6 -1.9676 -12.1526 -7.0037 20 1 -1.9947 -12.5385 -5.9954 21 6 -2.3342 -12.9649 -8.0679 22 7 -2.3015 -12.4944 -9.2967 23 14 -2.8752 -14.7254 -7.7558 24 1 -4.0706 -14.7272 -6.8747 25 1 -3.2109 -15.3764 -9.0476 26 1 -1.7737 -15.4724 -7.0971 27 1 -0.3634 0.0032 1.0277 28 1 -0.3633 0.8885 -0.5166 29 1 -0.3634 -0.8915 -0.5111 30 1 4.4099 1.3409 -0.0122 31 1 4.4776 -1.2834 -0.0088 32 1 0.9325 -2.5762 0.6023 33 1 2.6186 -3.1231 0.4395 34 1 1.0032 -4.8058 -0.9101 35 1 0.0849 -3.9859 -3.4519 36 1 1.7711 -4.5323 -3.6141 37 1 1.1653 -6.7051 -2.5834 38 1 -0.5208 -6.1579 -2.4214 39 1 -0.6710 -5.8898 -4.8815 40 1 1.0149 -6.4370 -5.0443 41 1 -0.4218 -8.3981 -3.6073 42 1 -0.3454 -10.5929 -5.1695 43 1 -2.0313 -10.0459 -5.0061 44 1 -2.5574 -13.0622 -10.0404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522838878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:50 Heat of formation + Delta-G solvation = -48.251087 kcal Electronic energy + Delta-G solvation = -24940.842765 eV Core-core repulsion = 21019.167616 eV Total energy + Delta-G solvation = -3921.675150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.10082 -40.78981 -40.52698 -37.29728 -35.58528 -35.01358 -34.57686 -32.77887 -32.64193 -30.71001 -29.04622 -27.72797 -27.61690 -25.96625 -22.89365 -22.44889 -22.07714 -21.73015 -20.65973 -19.82133 -18.56553 -18.23557 -17.70656 -17.38620 -17.20489 -16.86981 -16.61060 -16.46813 -16.07993 -15.84494 -15.63640 -15.21889 -14.78392 -14.65702 -14.61808 -14.34957 -14.19157 -13.93706 -13.49397 -13.44468 -13.25542 -13.20736 -13.16363 -13.16088 -12.85436 -12.62470 -12.60557 -12.08746 -11.74323 -11.52373 -11.12006 -10.99182 -10.97814 -10.50873 -10.26533 -10.22882 -10.12250 -9.27887 -8.66487 -8.33711 -6.12235 0.95849 1.27738 1.42786 1.44846 1.47953 1.56867 1.61673 1.68770 2.10985 2.18274 2.28385 2.41145 3.00627 3.33051 3.57024 3.60308 3.76705 3.84744 3.92412 3.96904 3.98379 4.12813 4.14522 4.31876 4.42301 4.49222 4.52718 4.55818 4.58222 4.68135 4.76502 4.83109 5.00780 5.08740 5.08979 5.28365 5.30603 5.42166 5.43279 5.82488 6.17277 6.20264 6.45265 6.52845 7.07541 7.11922 7.14718 7.26546 8.75243 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.045849 B = 0.001281 C = 0.001274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.552608 B =21855.586595 C =21973.732410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.202 3.798 3 N -0.540 5.540 4 C -0.060 4.060 5 C -0.048 4.048 6 N -0.446 5.446 7 C 0.085 3.915 8 C 0.492 3.508 9 O -0.578 6.578 10 N -0.705 5.705 11 C 0.124 3.876 12 C -0.120 4.120 13 C 0.119 3.881 14 N -0.709 5.709 15 C 0.531 3.469 16 O -0.569 6.569 17 C -0.128 4.128 18 S -0.158 6.158 19 C -0.547 4.547 20 H 0.085 0.915 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.261 1.261 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.179 0.821 31 H 0.204 0.796 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.425 0.575 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.420 0.580 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.276 16.216 30.060 35.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 N -0.260 5.260 4 C -0.206 4.206 5 C -0.180 4.180 6 N -0.129 5.129 7 C -0.040 4.040 8 C 0.277 3.723 9 O -0.457 6.457 10 N -0.359 5.359 11 C -0.001 4.001 12 C -0.158 4.158 13 C -0.005 4.005 14 N -0.364 5.364 15 C 0.317 3.683 16 O -0.448 6.448 17 C -0.280 4.280 18 S 0.069 5.931 19 C -0.694 4.694 20 H 0.103 0.897 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.186 1.186 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.196 0.804 31 H 0.221 0.779 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.263 0.737 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.258 0.742 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.214 18.410 27.520 34.114 hybrid contribution 0.021 -2.595 0.976 2.772 sum 8.235 15.816 28.497 33.616 Atomic orbital electron populations 1.20278 0.83318 1.04221 1.04696 1.23794 0.96840 0.81458 1.04004 1.70183 1.03628 1.30051 1.22114 1.22643 0.94713 0.94238 1.08990 1.23136 0.87761 0.96809 1.10263 1.45042 1.06478 1.06955 1.54444 1.22060 1.07355 0.80485 0.94103 1.21319 0.76782 0.82237 0.91930 1.90831 1.52982 1.54402 1.47458 1.45673 1.67241 1.12939 1.10006 1.21105 1.00642 0.95052 0.83254 1.21795 1.04492 0.94604 0.94920 1.21236 0.99500 0.81394 0.98406 1.45635 1.68319 1.13867 1.08590 1.20116 0.76378 0.87882 0.83973 1.90710 1.53656 1.67163 1.33252 1.23366 1.05683 0.95821 1.03097 1.85648 1.87185 1.14468 1.05787 1.23182 1.52033 0.97501 0.96727 0.89699 1.26133 0.94765 1.04258 0.93968 1.70180 1.46272 1.38696 0.99725 0.85005 0.79144 0.76045 0.77810 1.18562 1.20595 1.18581 0.87758 0.90069 0.90121 0.80360 0.77945 0.82351 0.81899 0.73671 0.92326 0.92504 0.87979 0.87872 0.92585 0.92672 0.74225 0.86956 0.86934 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.04 71.23 0.72 -0.04 16 2 C 0.20 3.71 7.88 138.13 1.09 4.80 16 3 N -0.54 -13.08 11.25 -188.12 -2.12 -15.19 16 4 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 5 C -0.05 -0.68 11.58 83.09 0.96 0.28 16 6 N -0.45 -5.92 2.24 -518.33 -1.16 -7.08 16 7 C 0.09 0.27 6.15 85.63 0.53 0.79 16 8 C 0.49 5.20 7.90 87.66 0.69 5.89 16 9 O -0.58 -13.71 16.42 -3.03 -0.05 -13.76 16 10 N -0.70 -3.20 5.56 -463.06 -2.57 -5.77 16 11 C 0.12 1.23 5.67 86.38 0.49 1.72 16 12 C -0.12 -0.74 5.44 30.60 0.17 -0.57 16 13 C 0.12 2.06 5.67 86.38 0.49 2.55 16 14 N -0.71 -14.53 5.56 -463.06 -2.57 -17.10 16 15 C 0.53 18.22 7.85 87.65 0.69 18.90 16 16 O -0.57 -25.74 15.86 -3.05 -0.05 -25.79 16 17 C -0.13 -4.76 6.16 71.23 0.44 -4.32 16 18 S -0.16 -8.60 20.57 -56.49 -1.16 -9.77 16 19 C -0.55 -30.51 9.50 67.96 0.65 -29.87 16 20 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.57 13.22 21.65 0.29 -55.29 16 23 Si 1.00 42.57 29.55 68.60 2.03 44.60 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 27 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.08 0.70 7.84 -2.39 -0.02 0.68 16 30 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.16 -0.61 7.94 -2.39 -0.02 -0.63 16 33 H 0.16 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.42 -1.74 8.47 -92.71 -0.79 -2.52 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.42 5.02 8.47 -92.71 -0.79 4.23 16 42 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 43 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 44 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -97.81 397.28 0.45 -97.36 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -0.54 Total: 6.60 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 8.36 Total: 1.18 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -8.14 Total: -100.43 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.10 Total: -39.55 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -97.81 0.45 -97.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522838878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.112 kcal (2) G-P(sol) polarization free energy of solvation -97.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds