Wall clock time and date at job start Sat Apr 11 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47020 * 2 1 4 4 N 1.33318 * 126.10610 * 270.02416 * 3 2 1 5 5 C 1.30863 * 109.68510 * 179.72568 * 4 3 2 6 6 N 1.34497 * 109.16126 * 0.41168 * 5 4 3 7 7 H 0.97001 * 126.47393 * 179.86674 * 6 5 4 8 8 C 1.36660 * 126.10679 * 89.99219 * 3 2 1 9 9 C 1.46767 * 126.84829 * 0.03155 * 8 3 2 10 10 O 1.21688 * 119.99704 * 359.96673 * 9 8 3 11 11 N 1.34771 * 120.00285 * 179.97438 * 9 8 3 12 12 C 1.46504 * 119.99957 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46782 * 35.00329 * 12 11 9 14 14 C 1.53001 * 109.47142 * 274.99684 * 12 11 9 15 15 C 1.53004 * 109.46761 * 154.99809 * 12 11 9 16 16 N 1.46493 * 109.47233 * 304.99772 * 15 12 11 17 17 C 1.34777 * 119.99939 * 179.97438 * 16 15 12 18 18 O 1.21287 * 120.00214 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00250 * 180.02562 * 17 16 15 20 20 S 1.80995 * 109.47406 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00321 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99810 * 0.02562 * 21 20 19 23 23 C 1.38797 * 120.00113 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00220 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99759 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47297 * 90.00139 * 25 23 21 27 27 H 1.48500 * 109.47152 * 209.99996 * 25 23 21 28 28 H 1.48495 * 109.47388 * 330.00143 * 25 23 21 29 29 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47483 * 299.99966 * 1 2 3 31 31 H 1.08997 * 109.47268 * 60.00685 * 1 2 3 32 32 H 1.08995 * 109.47480 * 239.99551 * 2 1 3 33 33 H 1.09006 * 109.47010 * 119.99330 * 2 1 3 34 34 H 1.07995 * 125.41952 * 180.25005 * 5 4 3 35 35 H 0.96999 * 120.00020 * 359.97438 * 11 9 8 36 36 H 1.08996 * 109.47383 * 299.99886 * 14 12 11 37 37 H 1.08997 * 109.46828 * 60.00776 * 14 12 11 38 38 H 1.09005 * 109.46598 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.46768 * 65.00555 * 15 12 11 40 40 H 1.09001 * 109.46989 * 184.99768 * 15 12 11 41 41 H 0.96996 * 120.00204 * 0.02562 * 16 15 12 42 42 H 1.08996 * 109.47170 * 300.00584 * 19 17 16 43 43 H 1.09001 * 109.46616 * 60.00288 * 19 17 16 44 44 H 0.96998 * 119.99902 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1617 -1.0771 5 6 2.7067 3.3471 -0.7072 6 7 2.7335 3.4058 0.6362 7 1 3.0019 4.1666 1.1749 8 6 2.3006 2.1802 1.1041 9 6 2.1576 1.7744 2.5073 10 8 1.7623 0.6563 2.7801 11 7 2.4640 2.6401 3.4937 12 6 2.3207 2.2352 4.8944 13 1 2.5725 1.1794 4.9949 14 6 0.8761 2.4604 5.3452 15 6 3.2626 3.0692 5.7652 16 7 4.6319 2.9472 5.2590 17 6 5.6381 3.6006 5.8731 18 8 5.4100 4.2894 6.8450 19 6 7.0466 3.4756 5.3521 20 16 8.1608 4.4621 6.3823 21 6 9.6917 4.1424 5.5705 22 1 9.7194 3.4972 4.7049 23 6 10.8617 4.7206 6.0429 24 7 10.8279 5.5074 7.0976 25 14 12.4847 4.3811 5.1826 26 1 12.7047 5.3967 4.1218 27 1 13.5919 4.4487 6.1699 28 1 12.4478 3.0279 4.5722 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.9846 4.1495 -1.3744 35 1 2.7794 3.5313 3.2763 36 1 0.6245 3.5161 5.2447 37 1 0.2052 1.8662 4.7248 38 1 0.7695 2.1587 6.3872 39 1 2.9556 4.1146 5.7344 40 1 3.2218 2.7087 6.7930 41 1 4.8143 2.3967 4.4815 42 1 7.3540 2.4303 5.3828 43 1 7.0871 3.8361 4.3242 44 1 11.6455 5.9118 7.4274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526401721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:54 Heat of formation + Delta-G solvation = -30.421571 kcal Electronic energy + Delta-G solvation = -26485.998292 eV Core-core repulsion = 22565.096288 eV Total energy + Delta-G solvation = -3920.902004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.64472 -40.10646 -39.11589 -36.65965 -34.66168 -33.73013 -32.59704 -32.48684 -31.40557 -29.56154 -29.18850 -26.14433 -25.46218 -24.61866 -23.26200 -22.27204 -21.06470 -20.48460 -20.07134 -19.18902 -17.93638 -16.86796 -16.76977 -16.38026 -16.01926 -15.77170 -15.32142 -15.02553 -14.85751 -14.80820 -14.38849 -14.19247 -14.10049 -13.70994 -13.56774 -13.21300 -13.02001 -12.95798 -12.64089 -12.61888 -12.33266 -11.91385 -11.72433 -11.41123 -11.24677 -11.11378 -11.08244 -10.81358 -10.79804 -10.42811 -10.19225 -9.88463 -9.69735 -9.52807 -9.14081 -9.07006 -8.89502 -8.31783 -6.57455 -6.27621 -3.98933 0.88216 2.41915 2.45382 2.62675 2.90547 2.93975 2.97154 3.18063 3.23605 3.27458 3.60257 4.03694 4.14649 4.22114 4.38803 4.63843 4.71139 4.75548 4.86546 5.03738 5.07758 5.18085 5.22867 5.24159 5.26100 5.31502 5.40446 5.43041 5.56864 5.65412 5.77761 5.78438 5.81344 5.93780 5.97414 6.03512 6.04347 6.21476 6.41642 6.73821 6.95091 7.51815 7.52183 7.54286 7.71162 8.29249 8.45715 9.17898 10.79745 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.002363 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.065904 B =11845.333944 C =13371.878077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.105 3.895 4 N -0.498 5.498 5 C 0.225 3.775 6 N -0.555 5.555 7 H 0.423 0.577 8 C -0.097 4.097 9 C 0.598 3.402 10 O -0.517 6.517 11 N -0.727 5.727 12 C 0.133 3.867 13 H 0.100 0.900 14 C -0.161 4.161 15 C 0.112 3.888 16 N -0.741 5.741 17 C 0.532 3.468 18 O -0.515 6.515 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.281 1.281 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.217 0.783 35 H 0.396 0.604 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.680 -5.873 -13.256 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.029 4.029 4 N -0.218 5.218 5 C -0.060 4.060 6 N -0.160 5.160 7 H 0.262 0.738 8 C -0.213 4.213 9 C 0.385 3.615 10 O -0.393 6.393 11 N -0.379 5.379 12 C 0.029 3.971 13 H 0.118 0.882 14 C -0.220 4.220 15 C -0.012 4.012 16 N -0.397 5.397 17 C 0.318 3.682 18 O -0.388 6.388 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.233 0.767 35 H 0.230 0.770 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.342 -5.712 -12.047 26.017 hybrid contribution 1.913 0.152 -1.157 2.241 sum -20.428 -5.560 -13.204 24.951 Atomic orbital electron populations 1.21609 0.94334 1.01841 1.01698 1.20082 0.96223 0.88717 1.03857 1.21088 0.98264 0.96988 0.86595 1.70169 1.18611 1.02585 1.30418 1.25214 1.00827 0.97893 0.82035 1.43369 1.50417 1.13299 1.08926 0.73788 1.20882 1.16830 0.88572 0.94973 1.16814 0.77359 0.84763 0.82558 1.90841 1.45969 1.19649 1.82806 1.46029 1.68764 1.16873 1.06278 1.21301 0.95772 1.00768 0.79249 0.88194 1.22110 0.94999 1.02498 1.02345 1.21630 0.81030 1.00400 0.98177 1.46018 1.06954 1.52403 1.34275 1.20343 0.86273 0.78553 0.83025 1.90717 1.84101 1.38358 1.25658 1.23531 0.95307 1.06321 1.05289 1.85394 0.99148 1.60193 1.38481 1.22855 0.93078 1.35199 1.17348 0.90942 1.24995 0.99036 0.94501 0.95029 1.70011 1.28797 1.29216 1.22208 0.86163 0.81466 0.78797 0.79061 1.20260 1.20689 1.19669 0.92114 0.92700 0.92890 0.90527 0.88738 0.76704 0.76989 0.92073 0.91420 0.90815 0.90936 0.89696 0.76771 0.89177 0.89383 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.49 5.93 -27.88 -0.17 -0.65 16 3 C 0.11 1.10 6.40 -82.52 -0.53 0.57 16 4 N -0.50 -5.07 11.20 -10.64 -0.12 -5.19 16 5 C 0.22 1.48 13.01 -90.57 -1.18 0.30 16 6 N -0.56 -3.29 6.07 -10.79 -0.07 -3.36 16 7 H 0.42 1.23 8.32 -40.82 -0.34 0.89 16 8 C -0.10 -0.88 7.08 -82.14 -0.58 -1.46 16 9 C 0.60 5.66 7.76 -12.82 -0.10 5.57 16 10 O -0.52 -6.26 14.48 5.20 0.08 -6.19 16 11 N -0.73 -5.19 4.51 -55.08 -0.25 -5.44 16 12 C 0.13 1.03 2.73 -67.93 -0.19 0.84 16 13 H 0.10 0.89 7.58 -51.93 -0.39 0.50 16 14 C -0.16 -1.09 9.48 37.16 0.35 -0.74 16 15 C 0.11 1.06 5.23 -4.04 -0.02 1.04 16 16 N -0.74 -8.64 5.39 -60.29 -0.32 -8.96 16 17 C 0.53 9.15 7.85 -10.98 -0.09 9.06 16 18 O -0.51 -10.92 15.86 5.55 0.09 -10.84 16 19 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 25 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.99 6.48 -51.93 -0.34 0.65 16 34 H 0.22 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.40 2.15 7.85 -40.82 -0.32 1.83 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.40 3.92 8.14 -40.82 -0.33 3.59 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -37.02 390.78 -9.25 -46.27 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.34 Total: 2.22 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.71 Total: -1.72 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.02 Total: -47.94 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.16 Total: -17.02 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.02 -9.25 -46.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526401721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.848 kcal (2) G-P(sol) polarization free energy of solvation -37.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds