Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30857 * 125.41729 * 2 1 4 4 C 1.33318 * 109.68202 * 179.97438 * 3 2 1 5 5 C 1.36664 * 107.79162 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84960 * 179.97438 * 5 4 3 7 7 O 1.21680 * 120.00217 * 186.97812 * 6 5 4 8 8 N 1.34775 * 119.99748 * 6.97620 * 6 5 4 9 9 C 1.46499 * 120.00345 * 5.60833 * 8 6 5 10 10 C 1.46504 * 119.99936 * 185.60897 * 8 6 5 11 11 C 1.52999 * 109.46849 * 270.00204 * 10 8 6 12 12 N 1.46504 * 109.46849 * 179.97438 * 11 10 8 13 13 C 1.34778 * 119.99831 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00181 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99923 * 180.02562 * 13 12 11 16 16 S 1.81007 * 109.47214 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99915 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99982 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99519 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00565 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99637 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47457 * 90.00476 * 21 19 17 23 23 H 1.48502 * 109.47093 * 210.00134 * 21 19 17 24 24 H 1.48500 * 109.47104 * 329.99807 * 21 19 17 25 25 N 1.34499 * 125.41785 * 180.31570 * 2 1 3 26 26 C 1.46503 * 126.47172 * 0.02562 * 25 2 1 27 27 H 1.08989 * 109.46866 * 90.02529 * 1 2 3 28 28 H 1.08997 * 109.46896 * 210.02799 * 1 2 3 29 29 H 1.09003 * 109.46561 * 330.02643 * 1 2 3 30 30 H 1.08002 * 126.10566 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.47110 * 275.72656 * 9 8 6 32 32 H 1.09004 * 109.46621 * 35.71994 * 9 8 6 33 33 H 1.08999 * 109.47529 * 155.72109 * 9 8 6 34 34 H 1.08999 * 109.47292 * 29.99570 * 10 8 6 35 35 H 1.08993 * 109.47057 * 149.99897 * 10 8 6 36 36 H 1.09000 * 109.47264 * 299.99305 * 11 10 8 37 37 H 1.08993 * 109.47542 * 59.99990 * 11 10 8 38 38 H 0.97003 * 120.00257 * 0.02562 * 12 11 10 39 39 H 1.09004 * 109.46902 * 299.99646 * 15 13 12 40 40 H 1.08998 * 109.47620 * 59.99392 * 15 13 12 41 41 H 0.96999 * 120.00331 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.47174 * 264.50372 * 26 25 2 43 43 H 1.08996 * 109.46961 * 24.51129 * 26 25 2 44 44 H 1.09004 * 109.46921 * 144.50416 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5977 -0.6609 0.0015 6 6 4.8029 -1.4983 0.0019 7 8 4.7057 -2.7046 -0.1253 8 7 6.0174 -0.9313 0.1430 9 6 6.1285 0.5032 0.4187 10 6 7.2265 -1.7495 0.0206 11 6 7.6085 -2.3036 1.3946 12 7 8.8172 -3.1223 1.2721 13 6 9.3415 -3.7171 2.3620 14 8 8.8130 -3.5742 3.4442 15 6 10.5852 -4.5587 2.2361 16 16 11.0371 -5.2145 3.8616 17 6 12.4789 -6.1316 3.4315 18 1 12.8188 -6.1541 2.4067 19 6 13.1782 -6.8242 4.4101 20 7 12.7642 -6.7964 5.6592 21 14 14.7071 -7.7959 3.9543 22 1 15.9020 -6.9219 4.0701 23 1 14.8499 -8.9538 4.8731 24 1 14.5848 -8.2847 2.5574 25 7 2.2865 -1.0961 -0.0060 26 6 1.8311 -2.4885 -0.0142 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3632 0.8903 0.5135 30 1 4.3979 1.3722 0.0003 31 1 6.0814 1.0580 -0.5182 32 1 5.3082 0.8133 1.0662 33 1 7.0784 0.7056 0.9135 34 1 7.0382 -2.5758 -0.6648 35 1 8.0421 -1.1371 -0.3638 36 1 7.7968 -1.4773 2.0801 37 1 6.7928 -2.9159 1.7790 38 1 9.2402 -3.2363 0.4066 39 1 10.3970 -5.3847 1.5502 40 1 11.4011 -3.9464 1.8521 41 1 13.2528 -7.2807 6.3430 42 1 1.8114 -2.8703 1.0065 43 1 0.8297 -2.5407 -0.4413 44 1 2.5137 -3.0905 -0.6142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527937487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = 9.173479 kcal Electronic energy + Delta-G solvation = -26054.795901 eV Core-core repulsion = 22135.610868 eV Total energy + Delta-G solvation = -3919.185034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.75897 -40.04200 -39.03890 -36.53436 -34.79578 -34.21568 -32.49155 -32.42501 -30.67589 -28.92599 -28.14236 -27.04918 -26.94115 -25.47702 -23.63527 -22.36624 -20.88600 -20.34272 -19.76064 -17.86740 -17.56686 -17.04539 -16.77974 -16.54891 -16.21979 -15.72017 -15.38484 -15.09460 -14.80085 -14.67165 -14.27624 -13.96271 -13.89665 -13.84219 -13.67137 -13.47700 -13.29167 -13.16981 -12.90090 -12.84832 -12.55839 -12.32578 -12.19154 -11.92586 -11.41988 -11.06027 -11.02216 -10.81199 -10.76154 -10.23134 -10.13018 -9.82009 -9.47714 -9.18682 -9.06934 -8.92031 -8.87214 -8.23240 -6.49740 -6.21265 -3.91938 0.87566 1.91641 2.37044 2.60483 2.91092 3.09447 3.10854 3.22628 3.28875 3.34544 3.76505 3.89557 4.00302 4.20700 4.31251 4.43382 4.61868 4.62900 4.69966 4.77679 4.82361 4.95279 4.95879 5.01691 5.12535 5.13862 5.14865 5.18316 5.24736 5.32417 5.59163 5.61677 5.72581 5.78421 5.89676 6.01188 6.09455 6.14024 6.57095 6.58300 6.81774 7.46089 7.59835 7.66518 7.70762 8.35554 8.60198 9.23974 10.86169 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031062 B = 0.001688 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.218274 B =16579.468395 C =16868.953693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.228 3.772 3 N -0.496 5.496 4 C 0.023 3.977 5 C -0.088 4.088 6 C 0.594 3.406 7 O -0.537 6.537 8 N -0.600 5.600 9 C 0.057 3.943 10 C 0.111 3.889 11 C 0.107 3.893 12 N -0.737 5.737 13 C 0.533 3.467 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.423 5.423 26 C 0.065 3.935 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.198 0.802 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.968 16.335 -16.830 32.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 N -0.215 5.215 4 C -0.131 4.131 5 C -0.205 4.205 6 C 0.383 3.617 7 O -0.415 6.415 8 N -0.333 5.333 9 C -0.085 4.085 10 C -0.012 4.012 11 C -0.019 4.019 12 N -0.392 5.392 13 C 0.319 3.681 14 O -0.390 6.390 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 N -0.104 5.104 26 C -0.076 4.076 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.214 0.786 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.238 16.470 -14.894 32.142 hybrid contribution 2.172 -1.632 -1.892 3.311 sum -21.067 14.838 -16.786 30.753 Atomic orbital electron populations 1.20302 0.84281 1.04584 1.03959 1.23508 0.96001 0.81162 1.02674 1.70179 1.02256 1.28079 1.20948 1.23647 0.95610 0.91736 1.02154 1.20594 0.85220 0.94928 1.19759 1.16800 0.81978 0.86380 0.76538 1.90829 1.86262 1.14058 1.50370 1.47243 1.04960 1.09726 1.71335 1.22543 1.04561 0.79816 1.01609 1.21644 0.86002 0.96067 0.97513 1.21565 0.88142 0.95309 0.96837 1.45831 1.29104 1.52961 1.11341 1.20313 0.85173 0.79060 0.83558 1.90709 1.61365 1.60260 1.26679 1.23527 0.96991 1.01502 1.08313 1.85418 1.34008 1.62165 1.01818 1.22870 1.12629 1.35612 0.97287 0.90897 1.24991 0.98006 0.96127 0.94459 1.70015 1.39144 1.40574 1.00550 0.86163 0.81698 0.79177 0.78426 1.20270 1.20755 1.19700 1.45100 1.05082 1.08476 1.51744 1.22298 1.01910 0.78573 1.04865 0.89664 0.90416 0.88586 0.78613 0.91379 0.89353 0.89881 0.88949 0.89214 0.91452 0.91169 0.76770 0.89134 0.89133 0.92181 0.89904 0.89241 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 9.92 36.01 0.36 0.04 16 2 C 0.23 1.97 7.88 -155.61 -1.23 0.74 16 3 N -0.50 -5.09 11.20 -10.58 -0.12 -5.21 16 4 C 0.02 0.20 9.80 -17.48 -0.17 0.03 16 5 C -0.09 -0.91 6.75 -82.14 -0.55 -1.46 16 6 C 0.59 6.64 7.63 -12.82 -0.10 6.55 16 7 O -0.54 -7.54 14.63 5.21 0.08 -7.46 16 8 N -0.60 -5.17 2.87 -183.10 -0.53 -5.70 16 9 C 0.06 0.30 8.67 59.85 0.52 0.81 16 10 C 0.11 0.94 5.45 -4.04 -0.02 0.92 16 11 C 0.11 1.30 6.00 -4.04 -0.02 1.27 16 12 N -0.74 -9.82 5.56 -60.29 -0.33 -10.16 16 13 C 0.53 10.10 7.85 -10.99 -0.09 10.01 16 14 O -0.52 -12.05 15.86 5.55 0.09 -11.96 16 15 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 21 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 N -0.42 -3.90 3.17 -117.27 -0.37 -4.28 16 26 C 0.07 0.45 10.30 59.85 0.62 1.06 16 27 H 0.08 0.26 8.14 -51.94 -0.42 -0.16 16 28 H 0.08 0.21 7.56 -51.93 -0.39 -0.19 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.20 1.16 4.41 -52.49 -0.23 0.93 16 31 H 0.07 0.23 7.41 -51.93 -0.39 -0.16 16 32 H 0.09 0.46 5.28 -51.93 -0.27 0.19 16 33 H 0.08 0.34 8.03 -51.93 -0.42 -0.07 16 34 H 0.09 0.86 7.50 -51.93 -0.39 0.47 16 35 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 3.92 8.47 -40.82 -0.35 3.57 16 39 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.32 7.38 -51.93 -0.38 -0.06 16 44 H 0.10 0.87 6.69 -51.93 -0.35 0.53 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -39.84 383.27 -8.27 -48.11 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.09 Total: -0.21 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.27 Total: 4.09 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.62 Total: -50.90 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.16 Total: -19.42 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.84 -8.27 -48.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527937487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.280 kcal (2) G-P(sol) polarization free energy of solvation -39.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds