Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30857 * 125.41729 * 2 1 4 4 C 1.33318 * 109.68202 * 179.97438 * 3 2 1 5 5 C 1.36664 * 107.79162 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84960 * 179.97438 * 5 4 3 7 7 O 1.21680 * 120.00217 * 186.97812 * 6 5 4 8 8 N 1.34775 * 119.99748 * 6.97620 * 6 5 4 9 9 C 1.46499 * 120.00345 * 5.60833 * 8 6 5 10 10 C 1.46504 * 119.99936 * 185.60897 * 8 6 5 11 11 C 1.52999 * 109.46849 * 270.00204 * 10 8 6 12 12 N 1.46504 * 109.46849 * 179.97438 * 11 10 8 13 13 C 1.34778 * 119.99831 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00181 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99923 * 180.02562 * 13 12 11 16 16 S 1.81007 * 109.47214 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99915 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99982 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99519 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00565 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99637 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47457 * 90.00476 * 21 19 17 23 23 H 1.48502 * 109.47093 * 210.00134 * 21 19 17 24 24 H 1.48500 * 109.47104 * 329.99807 * 21 19 17 25 25 N 1.34499 * 125.41785 * 180.31570 * 2 1 3 26 26 C 1.46503 * 126.47172 * 0.02562 * 25 2 1 27 27 H 1.08989 * 109.46866 * 90.02529 * 1 2 3 28 28 H 1.08997 * 109.46896 * 210.02799 * 1 2 3 29 29 H 1.09003 * 109.46561 * 330.02643 * 1 2 3 30 30 H 1.08002 * 126.10566 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.47110 * 275.72656 * 9 8 6 32 32 H 1.09004 * 109.46621 * 35.71994 * 9 8 6 33 33 H 1.08999 * 109.47529 * 155.72109 * 9 8 6 34 34 H 1.08999 * 109.47292 * 29.99570 * 10 8 6 35 35 H 1.08993 * 109.47057 * 149.99897 * 10 8 6 36 36 H 1.09000 * 109.47264 * 299.99305 * 11 10 8 37 37 H 1.08993 * 109.47542 * 59.99990 * 11 10 8 38 38 H 0.97003 * 120.00257 * 0.02562 * 12 11 10 39 39 H 1.09004 * 109.46902 * 299.99646 * 15 13 12 40 40 H 1.08998 * 109.47620 * 59.99392 * 15 13 12 41 41 H 0.96999 * 120.00331 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.47174 * 264.50372 * 26 25 2 43 43 H 1.08996 * 109.46961 * 24.51129 * 26 25 2 44 44 H 1.09004 * 109.46921 * 144.50416 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5977 -0.6609 0.0015 6 6 4.8029 -1.4983 0.0019 7 8 4.7057 -2.7046 -0.1253 8 7 6.0174 -0.9313 0.1430 9 6 6.1285 0.5032 0.4187 10 6 7.2265 -1.7495 0.0206 11 6 7.6085 -2.3036 1.3946 12 7 8.8172 -3.1223 1.2721 13 6 9.3415 -3.7171 2.3620 14 8 8.8130 -3.5742 3.4442 15 6 10.5852 -4.5587 2.2361 16 16 11.0371 -5.2145 3.8616 17 6 12.4789 -6.1316 3.4315 18 1 12.8188 -6.1541 2.4067 19 6 13.1782 -6.8242 4.4101 20 7 12.7642 -6.7964 5.6592 21 14 14.7071 -7.7959 3.9543 22 1 15.9020 -6.9219 4.0701 23 1 14.8499 -8.9538 4.8731 24 1 14.5848 -8.2847 2.5574 25 7 2.2865 -1.0961 -0.0060 26 6 1.8311 -2.4885 -0.0142 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3632 0.8903 0.5135 30 1 4.3979 1.3722 0.0003 31 1 6.0814 1.0580 -0.5182 32 1 5.3082 0.8133 1.0662 33 1 7.0784 0.7056 0.9135 34 1 7.0382 -2.5758 -0.6648 35 1 8.0421 -1.1371 -0.3638 36 1 7.7968 -1.4773 2.0801 37 1 6.7928 -2.9159 1.7790 38 1 9.2402 -3.2363 0.4066 39 1 10.3970 -5.3847 1.5502 40 1 11.4011 -3.9464 1.8521 41 1 13.2528 -7.2807 6.3430 42 1 1.8114 -2.8703 1.0065 43 1 0.8297 -2.5407 -0.4413 44 1 2.5137 -3.0905 -0.6142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527937487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -20.646529 kcal Electronic energy + Delta-G solvation = -26056.088994 eV Core-core repulsion = 22135.610868 eV Total energy + Delta-G solvation = -3920.478126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.40584 -40.95032 -40.39031 -37.38623 -35.88344 -34.96587 -34.58791 -33.13896 -31.81525 -30.03310 -28.73568 -27.86783 -27.61250 -27.51797 -24.52975 -23.08035 -21.97843 -21.32103 -20.48740 -19.83691 -18.24973 -17.97512 -17.71953 -17.58710 -17.15717 -16.88110 -16.72366 -16.70729 -16.06589 -15.67537 -15.27840 -15.24486 -14.75556 -14.69868 -14.47092 -14.33244 -14.28355 -14.04947 -13.77203 -13.59330 -13.39490 -13.21170 -13.17054 -13.13396 -12.89210 -12.61599 -12.59900 -12.30100 -11.74271 -11.55011 -11.14414 -11.09621 -10.97129 -10.80302 -10.28313 -10.21038 -9.92975 -9.52654 -8.67787 -8.34810 -6.13410 0.17807 1.18773 1.32647 1.42803 1.48021 1.56924 1.57972 1.69368 1.96056 2.17677 2.27053 2.43845 2.99442 3.30980 3.34493 3.44445 3.78011 3.81612 3.88330 3.94915 3.99025 4.18268 4.25182 4.28239 4.30466 4.35487 4.50462 4.53692 4.60653 4.64536 4.69419 4.70380 4.84562 4.89270 5.02135 5.10058 5.23132 5.39277 5.41845 5.46466 6.00186 6.12226 6.19740 6.45396 6.78761 6.95019 7.06401 7.20374 8.74482 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031062 B = 0.001688 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.218274 B =16579.468395 C =16868.953693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.229 3.771 3 N -0.527 5.527 4 C 0.030 3.970 5 C -0.119 4.119 6 C 0.587 3.413 7 O -0.578 6.578 8 N -0.596 5.596 9 C 0.050 3.950 10 C 0.120 3.880 11 C 0.112 3.888 12 N -0.708 5.708 13 C 0.534 3.466 14 O -0.568 6.568 15 C -0.128 4.128 16 S -0.156 6.156 17 C -0.546 4.546 18 H 0.085 0.915 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.258 1.258 25 N -0.433 5.433 26 C 0.065 3.935 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.223 0.777 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.420 0.580 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.271 0.729 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.583 17.469 -19.397 33.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 N -0.247 5.247 4 C -0.124 4.124 5 C -0.235 4.235 6 C 0.377 3.623 7 O -0.460 6.460 8 N -0.327 5.327 9 C -0.091 4.091 10 C -0.003 4.003 11 C -0.014 4.014 12 N -0.363 5.363 13 C 0.320 3.680 14 O -0.447 6.447 15 C -0.279 4.279 16 S 0.072 5.928 17 C -0.694 4.694 18 H 0.103 0.897 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.182 1.182 25 N -0.114 5.114 26 C -0.076 4.076 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.239 0.761 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.258 0.742 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.142 0.858 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.849 17.649 -17.527 33.776 hybrid contribution 1.927 -1.873 -1.151 2.923 sum -20.923 15.777 -18.678 32.179 Atomic orbital electron populations 1.20514 0.81464 1.05775 1.05360 1.24317 0.97558 0.80648 1.00723 1.70223 1.02924 1.29035 1.22480 1.24132 0.96139 0.91616 1.00480 1.20690 0.85532 0.95423 1.21820 1.17089 0.83004 0.86042 0.76147 1.90799 1.86929 1.15678 1.52555 1.47358 1.04134 1.11059 1.70190 1.22796 1.05381 0.77828 1.03131 1.21628 0.87164 0.96772 0.94775 1.21601 0.86161 0.94312 0.99282 1.45502 1.28751 1.51209 1.10835 1.20131 0.84766 0.79128 0.84010 1.90699 1.62716 1.62293 1.28952 1.23362 0.98461 1.02458 1.03615 1.85628 1.35052 1.63401 1.08762 1.23213 1.12574 1.35654 0.97944 0.89729 1.26145 1.01703 0.97163 0.94193 1.70185 1.40955 1.41755 1.01945 0.84932 0.76886 0.77371 0.78650 1.19180 1.20405 1.18178 1.45332 1.04980 1.09309 1.51756 1.22379 1.03159 0.77459 1.04624 0.88004 0.88504 0.88111 0.76143 0.88806 0.89571 0.88242 0.89586 0.85117 0.91422 0.94677 0.74197 0.87184 0.86545 0.92006 0.90178 0.85772 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 9.92 71.24 0.71 0.22 16 2 C 0.23 3.71 7.88 138.20 1.09 4.80 16 3 N -0.53 -10.32 11.20 -187.38 -2.10 -12.42 16 4 C 0.03 0.52 9.80 84.10 0.82 1.34 16 5 C -0.12 -2.42 6.75 40.01 0.27 -2.15 16 6 C 0.59 13.21 7.63 86.47 0.66 13.87 16 7 O -0.58 -16.92 14.63 -4.28 -0.06 -16.98 16 8 N -0.60 -9.50 2.87 -851.43 -2.45 -11.95 16 9 C 0.05 0.39 8.67 127.77 1.11 1.50 16 10 C 0.12 1.80 5.45 86.38 0.47 2.28 16 11 C 0.11 2.63 6.00 86.38 0.52 3.15 16 12 N -0.71 -17.72 5.56 -463.06 -2.57 -20.29 16 13 C 0.53 20.01 7.85 87.66 0.69 20.70 16 14 O -0.57 -27.28 15.86 -3.04 -0.05 -27.32 16 15 C -0.13 -5.04 6.16 71.23 0.44 -4.61 16 16 S -0.16 -8.73 20.57 -56.49 -1.16 -9.89 16 17 C -0.55 -31.26 9.50 67.95 0.65 -30.62 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.72 5.49 84.86 0.47 1.19 16 20 N -0.91 -56.39 13.22 21.65 0.29 -56.11 16 21 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 N -0.43 -7.86 3.17 -524.93 -1.67 -9.52 16 26 C 0.06 0.88 10.30 127.77 1.32 2.20 16 27 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.10 0.28 7.56 -2.39 -0.02 0.26 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 30 H 0.22 2.20 4.41 -2.91 -0.01 2.19 16 31 H 0.09 0.31 7.41 -2.39 -0.02 0.30 16 32 H 0.09 0.76 5.28 -2.38 -0.01 0.75 16 33 H 0.10 0.51 8.03 -2.39 -0.02 0.49 16 34 H 0.09 1.47 7.50 -2.39 -0.02 1.46 16 35 H 0.13 0.96 8.07 -2.39 -0.02 0.94 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 6.98 8.47 -92.71 -0.79 6.20 16 39 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 40 H 0.12 4.00 8.14 -2.40 -0.02 3.98 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.12 0.70 7.38 -2.39 -0.02 0.69 16 44 H 0.08 1.51 6.69 -2.39 -0.02 1.49 16 Total: -1.00 -91.54 383.27 1.71 -89.83 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.25 Total: 15.11 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 9.20 Total: 13.88 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -8.50 Total: -110.29 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.11 Total: -44.31 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -91.54 1.71 -89.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527937487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.185 kcal (2) G-P(sol) polarization free energy of solvation -91.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds