Wall clock time and date at job start Sat Apr 11 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47152 * 2 1 4 4 N 1.30446 * 125.99006 * 270.01720 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.72464 * 4 3 2 6 6 H 0.96998 * 125.75472 * 180.27595 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47421 * 126.41174 * 180.26178 * 8 7 5 10 10 O 1.21602 * 119.99937 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00515 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00176 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46804 * 179.97438 * 12 11 9 14 14 N 1.46501 * 109.46804 * 179.97438 * 13 12 11 15 15 C 1.46494 * 120.00421 * 270.00292 * 14 13 12 16 16 C 1.34780 * 119.99496 * 90.00158 * 14 13 12 17 17 O 1.21272 * 120.00668 * 0.02562 * 16 14 13 18 18 C 1.50706 * 119.99688 * 179.97438 * 16 14 13 19 19 S 1.80995 * 109.47068 * 179.97438 * 18 16 14 20 20 C 1.76202 * 99.99929 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99946 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00292 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00539 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99705 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47237 * 89.99685 * 24 22 20 26 26 H 1.48504 * 109.47243 * 209.99700 * 24 22 20 27 27 H 1.48501 * 109.47297 * 330.00148 * 24 22 20 28 28 H 1.09003 * 109.46561 * 60.00454 * 1 2 3 29 29 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47436 * 300.00556 * 1 2 3 31 31 H 1.08998 * 109.47436 * 239.99444 * 2 1 3 32 32 H 1.09007 * 109.47001 * 119.99709 * 2 1 3 33 33 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 34 34 H 0.97000 * 119.99526 * 359.97438 * 11 9 8 35 35 H 1.08991 * 109.46974 * 300.00073 * 12 11 9 36 36 H 1.09000 * 109.47030 * 60.00136 * 12 11 9 37 37 H 1.09000 * 109.46993 * 300.00196 * 13 12 11 38 38 H 1.09000 * 109.46880 * 60.00455 * 13 12 11 39 39 H 1.09001 * 109.47418 * 89.99416 * 15 14 13 40 40 H 1.08996 * 109.47301 * 210.00386 * 15 14 13 41 41 H 1.09006 * 109.46959 * 330.00274 * 15 14 13 42 42 H 1.08994 * 109.46926 * 300.00556 * 18 16 14 43 43 H 1.09007 * 109.47012 * 60.00399 * 18 16 14 44 44 H 0.96997 * 120.00495 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1436 -1.0555 5 7 2.7275 3.4067 -0.6442 6 1 2.9802 4.1374 -1.2301 7 6 2.7443 3.4357 0.6979 8 6 2.3090 2.2035 1.1433 9 6 2.1609 1.7833 2.5485 10 8 1.7649 0.6636 2.8098 11 7 2.4644 2.6400 3.5438 12 6 2.3166 2.2225 4.9402 13 6 2.7248 3.3731 5.8624 14 7 2.5764 2.9558 7.2589 15 6 1.3067 3.1714 7.9569 16 6 3.6083 2.3735 7.9014 17 8 4.6596 2.1953 7.3237 18 6 3.4559 1.9447 9.3381 19 16 5.0027 1.2013 9.9131 20 6 4.5535 0.8032 11.5698 21 1 3.5620 1.0337 11.9307 22 6 5.4738 0.1935 12.4110 23 7 5.1385 -0.1034 13.6487 24 14 7.1890 -0.2045 11.7870 25 1 8.0895 0.9478 12.0453 26 1 7.7062 -1.4047 12.4922 27 1 7.1349 -0.4729 10.3275 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.0394 4.2709 1.3157 34 1 2.7806 3.5330 3.3354 35 1 1.2776 1.9544 5.1312 36 1 2.9554 1.3601 5.1312 37 1 3.7640 3.6408 5.6712 38 1 2.0863 4.2357 5.6716 39 1 0.6641 2.3018 7.8193 40 1 1.4969 3.3182 9.0201 41 1 0.8141 4.0549 7.5506 42 1 3.2188 2.8127 9.9531 43 1 2.6510 1.2136 9.4157 44 1 5.7818 -0.5292 14.2367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528378564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:01 Heat of formation + Delta-G solvation = -33.478737 kcal Electronic energy + Delta-G solvation = -26049.322624 eV Core-core repulsion = 22128.288051 eV Total energy + Delta-G solvation = -3921.034573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.44938 -40.98495 -40.07189 -37.14112 -35.75751 -35.04343 -34.66638 -32.40830 -31.31228 -31.19641 -29.34686 -27.85520 -27.38181 -25.08388 -24.72021 -23.51405 -21.51364 -20.85901 -20.44275 -19.61118 -19.35435 -18.14439 -17.57756 -17.33346 -17.11120 -16.74181 -16.52251 -16.30615 -15.81554 -15.71756 -15.50620 -15.06240 -14.95080 -14.87150 -14.60548 -14.31920 -14.22833 -13.92135 -13.60628 -13.36147 -13.30747 -13.20363 -13.04403 -12.96659 -12.68973 -12.46475 -12.27126 -12.16779 -11.86717 -11.82006 -11.16623 -11.04787 -10.87417 -10.57088 -10.51782 -10.21941 -9.79696 -9.75914 -8.99606 -8.51069 -6.21795 0.54396 0.98125 1.06746 1.31040 1.44060 1.49776 1.54678 1.78307 1.94753 2.25128 2.42999 2.48732 2.70525 2.87112 3.43998 3.59449 3.73298 3.87552 4.05722 4.15707 4.17681 4.20617 4.31060 4.39425 4.44127 4.44821 4.49255 4.55995 4.67160 4.72360 4.79889 4.95659 5.01117 5.03622 5.14458 5.25486 5.34004 5.43848 5.56776 5.71301 6.11945 6.19377 6.27036 6.45931 6.66773 6.94236 7.07129 7.32529 8.61140 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.001934 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.999928 B =14475.923041 C =14745.594697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.053 4.053 3 C 0.122 3.878 4 N -0.326 5.326 5 N -0.446 5.446 6 H 0.462 0.538 7 C 0.141 3.859 8 C -0.321 4.321 9 C 0.590 3.410 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.115 3.885 13 C 0.112 3.888 14 N -0.607 5.607 15 C 0.068 3.932 16 C 0.532 3.468 17 O -0.558 6.558 18 C -0.107 4.107 19 S -0.180 6.180 20 C -0.527 4.527 21 H 0.063 0.937 22 C 0.045 3.955 23 N -0.916 5.916 24 Si 0.914 3.086 25 H -0.261 1.261 26 H -0.260 1.260 27 H -0.239 1.239 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.417 0.583 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 14.741 -28.856 34.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 C -0.045 4.045 4 N -0.148 5.148 5 N -0.152 5.152 6 H 0.310 0.690 7 C -0.014 4.014 8 C -0.336 4.336 9 C 0.378 3.622 10 O -0.463 6.463 11 N -0.363 5.363 12 C -0.011 4.011 13 C -0.011 4.011 14 N -0.341 5.341 15 C -0.074 4.074 16 C 0.319 3.681 17 O -0.436 6.436 18 C -0.258 4.258 19 S 0.046 5.954 20 C -0.674 4.674 21 H 0.082 0.918 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.736 3.264 25 H -0.185 1.185 26 H -0.185 1.185 27 H -0.163 1.163 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.255 0.745 34 H 0.254 0.746 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.406 13.677 -30.616 34.826 hybrid contribution -0.252 0.277 1.731 1.771 sum -9.658 13.955 -28.885 33.502 Atomic orbital electron populations 1.21542 0.93282 1.02699 1.01298 1.20100 0.97156 0.88406 1.03528 1.22605 0.95193 0.97307 0.89428 1.77130 1.23039 0.92045 1.22630 1.46169 1.50292 1.12589 1.06154 0.68963 1.23825 0.93487 0.98371 0.85692 1.20252 1.22608 0.97528 0.93218 1.17544 0.76109 0.84019 0.84483 1.90754 1.48684 1.21981 1.84878 1.45399 1.68496 1.17605 1.04753 1.21499 1.01173 0.97801 0.80600 1.21679 1.04219 0.96511 0.78652 1.47682 1.13624 1.60274 1.12496 1.22186 0.83337 1.03694 0.98181 1.20057 0.83587 0.76830 0.87623 1.90686 1.29002 1.55338 1.68545 1.23298 1.01604 1.04788 0.96084 1.84732 1.19381 1.78482 1.12769 1.22441 1.02716 1.46004 0.96272 0.91832 1.25554 1.02383 0.93815 0.94267 1.70009 1.37445 1.41331 1.06597 0.85878 0.79962 0.79449 0.81151 1.18523 1.18461 1.16266 0.92386 0.90840 0.93735 0.89817 0.90124 0.74457 0.74586 0.91203 0.95075 0.90054 0.85039 0.91656 0.90582 0.87116 0.86610 0.87318 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.89 71.98 0.71 -1.63 16 2 C -0.05 -1.07 5.97 29.85 0.18 -0.90 16 3 C 0.12 2.48 6.52 43.51 0.28 2.77 16 4 N -0.33 -5.82 12.63 -46.68 -0.59 -6.41 16 5 N -0.45 -3.72 7.29 -56.31 -0.41 -4.13 16 6 H 0.46 0.22 8.96 -213.43 -1.91 -1.69 16 7 C 0.14 0.97 11.52 84.28 0.97 1.94 16 8 C -0.32 -5.52 6.13 -20.15 -0.12 -5.65 16 9 C 0.59 12.92 7.81 86.66 0.68 13.59 16 10 O -0.58 -18.17 14.92 -4.04 -0.06 -18.23 16 11 N -0.71 -10.73 5.54 -466.38 -2.59 -13.32 16 12 C 0.11 2.29 6.00 86.38 0.52 2.81 16 13 C 0.11 1.77 5.56 86.38 0.48 2.25 16 14 N -0.61 -13.20 2.87 -846.75 -2.43 -15.63 16 15 C 0.07 0.95 10.29 127.77 1.31 2.26 16 16 C 0.53 17.79 7.69 87.66 0.67 18.47 16 17 O -0.56 -23.16 15.44 -3.01 -0.05 -23.21 16 18 C -0.11 -3.98 4.71 71.24 0.34 -3.65 16 19 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 20 C -0.53 -30.61 10.04 67.95 0.68 -29.93 16 21 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 22 C 0.05 2.66 5.50 84.86 0.47 3.13 16 23 N -0.92 -55.73 13.97 21.65 0.30 -55.43 16 24 Si 0.91 45.21 27.74 68.60 1.90 47.12 16 25 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.99 6.55 -2.38 -0.02 1.97 16 33 H 0.24 -1.13 7.46 -2.91 -0.02 -1.15 16 34 H 0.42 2.44 7.40 -92.71 -0.69 1.76 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.51 7.42 -2.39 -0.02 1.49 16 38 H 0.13 0.82 7.89 -2.39 -0.02 0.80 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.16 6.44 -2.39 -0.02 1.14 16 41 H 0.11 0.74 7.89 -2.38 -0.02 0.72 16 42 H 0.12 3.88 7.40 -2.40 -0.02 3.86 16 43 H 0.11 3.81 8.11 -2.39 -0.02 3.79 16 44 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -90.04 386.40 0.61 -89.43 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -1.59 Total: 4.50 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 7.17 Total: 5.48 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -5.72 Total: -94.92 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.11 Total: -41.44 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -90.04 0.61 -89.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528378564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.949 kcal (2) G-P(sol) polarization free energy of solvation -90.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds