Wall clock time and date at job start Sat Apr 11 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46509 * 109.47332 * 184.99768 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21593 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.47429 * 119.99325 * 180.02562 * 7 6 5 10 10 C 1.41288 * 126.41947 * 0.03282 * 9 7 6 11 11 N 1.30447 * 108.02374 * 179.97438 * 10 9 7 12 12 N 1.39929 * 108.89956 * 359.97438 * 11 10 9 13 13 C 1.46494 * 125.75798 * 179.97438 * 12 11 10 14 14 C 1.34268 * 108.48927 * 359.75305 * 12 11 10 15 15 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 16 16 C 1.34776 * 120.00080 * 275.00208 * 15 3 2 17 17 O 1.21276 * 120.00121 * 0.02562 * 16 15 3 18 18 C 1.50698 * 119.99878 * 179.97438 * 16 15 3 19 19 S 1.80995 * 109.47176 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00285 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99719 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00247 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99929 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46921 * 59.99534 * 24 22 20 26 26 H 1.48493 * 109.47266 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46650 * 299.99794 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.08996 * 109.47701 * 305.00165 * 5 3 2 34 34 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 35 35 H 0.96996 * 119.99905 * 0.02562 * 6 5 3 36 36 H 1.07998 * 125.98796 * 359.97069 * 10 9 7 37 37 H 1.09004 * 109.47166 * 90.02171 * 13 12 11 38 38 H 1.08999 * 109.47672 * 210.02283 * 13 12 11 39 39 H 1.08998 * 109.47260 * 330.02722 * 13 12 11 40 40 H 1.07997 * 126.28832 * 180.24506 * 14 12 11 41 41 H 0.97001 * 119.99703 * 95.00546 * 15 3 2 42 42 H 1.08998 * 109.47466 * 299.99891 * 18 16 15 43 43 H 1.09003 * 109.47620 * 60.00219 * 18 16 15 44 44 H 0.97001 * 120.00196 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1656 2.1458 -0.2576 9 6 5.8872 4.4439 0.0353 10 6 5.1074 5.6048 0.2364 11 7 5.9140 6.6285 0.2907 12 7 7.2291 6.1783 0.1299 13 6 8.4281 7.0200 0.1300 14 6 7.2072 4.8442 -0.0198 15 7 1.6525 2.0974 1.2518 16 6 0.4352 2.6643 1.3670 17 8 -0.3395 2.6319 0.4345 18 6 0.0363 3.3376 2.6549 19 16 -1.6425 3.9952 2.4971 20 6 -1.8442 4.7064 4.0966 21 1 -1.0440 4.6455 4.8194 22 6 -3.0317 5.3439 4.4280 23 7 -4.0071 5.4177 3.5472 24 14 -3.2457 6.0973 6.1239 25 1 -2.2080 7.1378 6.3378 26 1 -4.5932 6.7130 6.2256 27 1 -3.1062 5.0393 7.1566 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.9955 0.8310 0.6659 34 1 3.8499 1.0377 -1.0960 35 1 3.4412 3.5482 0.1315 36 1 4.0319 5.6386 0.3290 37 1 8.8093 7.1092 1.1473 38 1 9.1898 6.5676 -0.5050 39 1 8.1774 8.0096 -0.2520 40 1 8.0645 4.2026 -0.1604 41 1 2.2720 2.1231 1.9978 42 1 0.0673 2.6129 3.4685 43 1 0.7277 4.1529 2.8680 44 1 -4.8369 5.8636 3.7786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531070493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:04 Heat of formation + Delta-G solvation = -2.284732 kcal Electronic energy + Delta-G solvation = -26459.536567 eV Core-core repulsion = 22539.854668 eV Total energy + Delta-G solvation = -3919.681899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67927 -39.96590 -39.05689 -36.41413 -34.17512 -33.59557 -32.44463 -32.40141 -30.77483 -29.46784 -28.42485 -27.15493 -25.48822 -24.00847 -22.45201 -21.47789 -21.28445 -20.37195 -20.19666 -18.40073 -17.77612 -16.68580 -16.42945 -16.16221 -16.03999 -15.72340 -15.24885 -15.01545 -14.88660 -14.80939 -14.20571 -13.98478 -13.60511 -13.48905 -13.33413 -13.24660 -13.05595 -13.01195 -12.88137 -12.50651 -12.26149 -11.75056 -11.49920 -11.36200 -11.16835 -11.04779 -11.04088 -10.78930 -10.74436 -10.07930 -9.96439 -9.82923 -9.43717 -9.32596 -9.06982 -8.96739 -8.89389 -8.25615 -6.50988 -6.22606 -3.93136 1.20189 1.87871 1.96395 2.93772 3.02612 3.10989 3.23016 3.25606 3.27511 3.31111 3.69446 4.06084 4.19786 4.37046 4.43393 4.60581 4.65379 4.80716 4.91383 4.91917 5.04292 5.10565 5.12683 5.13823 5.27727 5.32959 5.46167 5.53227 5.61248 5.80561 5.85778 5.91033 6.03919 6.06875 6.12614 6.21867 6.26007 6.40823 6.58680 6.64907 7.16240 7.35054 7.58465 7.66187 8.08054 8.34066 8.58097 9.22932 10.84656 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009178 B = 0.002777 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.035421 B =10078.683210 C =12670.955957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.096 0.904 5 C 0.116 3.884 6 N -0.725 5.725 7 C 0.598 3.402 8 O -0.554 6.554 9 C -0.296 4.296 10 C 0.085 3.915 11 N -0.294 5.294 12 N -0.365 5.365 13 C 0.096 3.904 14 C 0.128 3.872 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.508 6.508 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.404 0.596 36 H 0.192 0.808 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.188 0.812 41 H 0.398 0.602 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.285 -3.692 -7.542 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.008 4.008 6 N -0.377 5.377 7 C 0.386 3.614 8 O -0.433 6.433 9 C -0.311 4.311 10 C -0.103 4.103 11 N -0.113 5.113 12 N -0.144 5.144 13 C -0.045 4.045 14 C -0.024 4.024 15 N -0.392 5.392 16 C 0.319 3.681 17 O -0.382 6.382 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.239 0.761 36 H 0.209 0.791 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.205 0.795 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.563 -2.957 -9.139 25.446 hybrid contribution 0.708 0.035 2.589 2.685 sum 24.271 -2.922 -6.550 25.309 Atomic orbital electron populations 1.21807 0.94032 1.00693 1.03857 1.21874 0.97772 0.94980 1.02196 1.21253 0.92398 0.94711 0.88777 0.88589 1.21667 0.92663 0.83320 1.03192 1.45742 1.07292 1.09946 1.74699 1.17188 0.81846 0.86865 0.75506 1.90765 1.56084 1.45807 1.50646 1.20235 0.93083 0.94490 1.23325 1.24165 1.00283 0.89182 0.96693 1.77264 0.86678 1.23224 1.24175 1.48483 1.06834 1.05413 1.53662 1.22011 0.82692 0.95889 1.03894 1.22966 0.98883 0.84965 0.95569 1.46130 1.17430 1.59442 1.16148 1.20253 0.80792 0.77487 0.89574 1.90721 1.50246 1.57156 1.40061 1.23551 1.07057 1.02844 0.97143 1.85369 1.06393 1.70882 1.20437 1.22825 1.03895 1.42200 0.99538 0.91027 1.24981 0.94845 0.95552 0.98141 1.70004 1.05010 1.40986 1.34297 0.86241 0.77529 0.79275 0.82573 1.19927 1.20822 1.19962 0.92005 0.91734 0.93622 0.91703 0.91173 0.90767 0.89981 0.76082 0.79141 0.90105 0.88988 0.88716 0.79484 0.76750 0.89349 0.89307 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.51 37.16 0.32 -1.61 16 2 C -0.13 -1.29 5.61 -26.74 -0.15 -1.44 16 3 C 0.13 1.36 2.42 -67.93 -0.16 1.20 16 4 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 5 C 0.12 1.03 5.23 -4.04 -0.02 1.01 16 6 N -0.72 -6.80 5.38 -61.38 -0.33 -7.13 16 7 C 0.60 6.71 7.81 -12.52 -0.10 6.61 16 8 O -0.55 -7.80 16.90 5.28 0.09 -7.71 16 9 C -0.30 -3.00 6.13 -105.07 -0.64 -3.64 16 10 C 0.08 0.85 11.50 -16.98 -0.20 0.65 16 11 N -0.29 -3.22 12.50 30.86 0.39 -2.83 16 12 N -0.37 -3.04 3.98 -67.60 -0.27 -3.31 16 13 C 0.10 0.36 11.44 59.84 0.68 1.05 16 14 C 0.13 1.08 11.30 -16.56 -0.19 0.89 16 15 N -0.74 -8.41 4.47 -53.81 -0.24 -8.65 16 16 C 0.53 8.76 6.42 -10.99 -0.07 8.69 16 17 O -0.51 -10.13 13.00 5.56 0.07 -10.06 16 18 C -0.16 -2.92 6.16 36.00 0.22 -2.70 16 19 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 24 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 28 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 29 H 0.06 1.03 5.64 -51.93 -0.29 0.74 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.49 7.09 -40.82 -0.29 3.20 16 36 H 0.19 1.51 7.50 -52.49 -0.39 1.11 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.19 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.40 3.75 8.60 -40.82 -0.35 3.40 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 43 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -37.04 388.27 -7.37 -44.42 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.32 Total: 4.03 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -0.11 Total: -1.97 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.28 Total: -47.03 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.16 Total: -17.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.04 -7.37 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531070493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.132 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds