Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46509 * 109.47332 * 184.99768 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21593 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.47429 * 119.99325 * 180.02562 * 7 6 5 10 10 C 1.41288 * 126.41947 * 0.03282 * 9 7 6 11 11 N 1.30447 * 108.02374 * 179.97438 * 10 9 7 12 12 N 1.39929 * 108.89956 * 359.97438 * 11 10 9 13 13 C 1.46494 * 125.75798 * 179.97438 * 12 11 10 14 14 C 1.34268 * 108.48927 * 359.75305 * 12 11 10 15 15 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 16 16 C 1.34776 * 120.00080 * 275.00208 * 15 3 2 17 17 O 1.21276 * 120.00121 * 0.02562 * 16 15 3 18 18 C 1.50698 * 119.99878 * 179.97438 * 16 15 3 19 19 S 1.80995 * 109.47176 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00285 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99719 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00247 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99929 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46921 * 59.99534 * 24 22 20 26 26 H 1.48493 * 109.47266 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46650 * 299.99794 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.08996 * 109.47701 * 305.00165 * 5 3 2 34 34 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 35 35 H 0.96996 * 119.99905 * 0.02562 * 6 5 3 36 36 H 1.07998 * 125.98796 * 359.97069 * 10 9 7 37 37 H 1.09004 * 109.47166 * 90.02171 * 13 12 11 38 38 H 1.08999 * 109.47672 * 210.02283 * 13 12 11 39 39 H 1.08998 * 109.47260 * 330.02722 * 13 12 11 40 40 H 1.07997 * 126.28832 * 180.24506 * 14 12 11 41 41 H 0.97001 * 119.99703 * 95.00546 * 15 3 2 42 42 H 1.08998 * 109.47466 * 299.99891 * 18 16 15 43 43 H 1.09003 * 109.47620 * 60.00219 * 18 16 15 44 44 H 0.97001 * 120.00196 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1656 2.1458 -0.2576 9 6 5.8872 4.4439 0.0353 10 6 5.1074 5.6048 0.2364 11 7 5.9140 6.6285 0.2907 12 7 7.2291 6.1783 0.1299 13 6 8.4281 7.0200 0.1300 14 6 7.2072 4.8442 -0.0198 15 7 1.6525 2.0974 1.2518 16 6 0.4352 2.6643 1.3670 17 8 -0.3395 2.6319 0.4345 18 6 0.0363 3.3376 2.6549 19 16 -1.6425 3.9952 2.4971 20 6 -1.8442 4.7064 4.0966 21 1 -1.0440 4.6455 4.8194 22 6 -3.0317 5.3439 4.4280 23 7 -4.0071 5.4177 3.5472 24 14 -3.2457 6.0973 6.1239 25 1 -2.2080 7.1378 6.3378 26 1 -4.5932 6.7130 6.2256 27 1 -3.1062 5.0393 7.1566 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.9955 0.8310 0.6659 34 1 3.8499 1.0377 -1.0960 35 1 3.4412 3.5482 0.1315 36 1 4.0319 5.6386 0.3290 37 1 8.8093 7.1092 1.1473 38 1 9.1898 6.5676 -0.5050 39 1 8.1774 8.0096 -0.2520 40 1 8.0645 4.2026 -0.1604 41 1 2.2720 2.1231 1.9978 42 1 0.0673 2.6129 3.4685 43 1 0.7277 4.1529 2.8680 44 1 -4.8369 5.8636 3.7786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531070493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = -30.146466 kcal Electronic energy + Delta-G solvation = -26460.744742 eV Core-core repulsion = 22539.854668 eV Total energy + Delta-G solvation = -3920.890074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.35531 -41.06363 -40.03822 -37.48293 -35.01293 -34.56128 -34.23378 -33.55370 -31.51015 -30.69191 -29.41817 -27.79568 -27.58794 -24.84672 -23.22509 -22.50724 -21.93955 -21.52226 -20.98779 -19.82403 -19.02812 -17.89573 -17.44105 -17.02647 -16.85842 -16.69443 -16.61550 -16.43862 -16.05833 -15.66794 -15.53637 -14.90584 -14.77448 -14.58723 -14.53140 -14.22492 -13.92197 -13.77470 -13.51357 -13.45407 -13.41253 -13.14354 -12.93530 -12.83946 -12.63128 -12.45950 -12.17046 -12.03507 -11.73322 -11.69293 -11.11132 -10.95457 -10.80240 -10.61511 -10.23171 -10.17435 -10.00683 -9.65181 -8.61427 -8.32745 -6.08936 0.53759 1.12866 1.29485 1.43886 1.44577 1.48276 1.58413 1.71524 2.20555 2.29440 2.39359 2.47573 3.01336 3.35735 3.51063 3.60914 3.79667 4.02512 4.04967 4.11798 4.15229 4.19196 4.36719 4.41754 4.45567 4.54808 4.56871 4.59888 4.66632 4.70030 4.78524 4.89615 4.99187 5.10255 5.22914 5.34583 5.43721 5.44844 5.53268 5.59668 5.87356 6.21456 6.45608 6.55897 6.59085 7.09103 7.26140 7.33911 8.75845 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009178 B = 0.002777 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.035421 B =10078.683210 C =12670.955957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.141 3.859 4 H 0.081 0.919 5 C 0.124 3.876 6 N -0.719 5.719 7 C 0.600 3.400 8 O -0.585 6.585 9 C -0.319 4.319 10 C 0.081 3.919 11 N -0.330 5.330 12 N -0.363 5.363 13 C 0.085 3.915 14 C 0.135 3.865 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.547 6.547 18 C -0.133 4.133 19 S -0.143 6.143 20 C -0.547 4.547 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.994 3.006 25 H -0.263 1.263 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.041 0.959 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.408 0.592 36 H 0.202 0.798 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.213 0.787 41 H 0.413 0.587 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.052 -4.115 -6.517 28.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.036 3.964 4 H 0.099 0.901 5 C 0.000 4.000 6 N -0.370 5.370 7 C 0.389 3.611 8 O -0.467 6.467 9 C -0.334 4.334 10 C -0.106 4.106 11 N -0.150 5.150 12 N -0.141 5.141 13 C -0.054 4.054 14 C -0.018 4.018 15 N -0.366 5.366 16 C 0.325 3.675 17 O -0.424 6.424 18 C -0.284 4.284 19 S 0.084 5.916 20 C -0.695 4.695 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.816 3.184 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.218 0.782 37 H 0.111 0.889 38 H 0.140 0.860 39 H 0.114 0.886 40 H 0.230 0.770 41 H 0.250 0.750 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.373 -3.374 -8.101 27.795 hybrid contribution -0.016 0.127 2.203 2.207 sum 26.357 -3.247 -5.899 27.203 Atomic orbital electron populations 1.21740 0.96478 1.00586 1.01334 1.21853 0.95296 0.94891 1.04175 1.21282 0.93289 0.94629 0.87215 0.90062 1.21624 0.91098 0.83236 1.04003 1.45712 1.06979 1.10306 1.74048 1.17304 0.81926 0.86940 0.74891 1.90744 1.56825 1.46695 1.52450 1.20287 0.93989 0.93993 1.25140 1.24368 1.00897 0.89052 0.96307 1.77197 0.88142 1.24181 1.25487 1.48831 1.06967 1.05862 1.52405 1.22401 0.81771 0.95743 1.05464 1.23394 0.99145 0.85260 0.93982 1.45836 1.15707 1.57765 1.17251 1.19823 0.81878 0.77610 0.88156 1.90723 1.51803 1.58881 1.40987 1.23398 1.02210 1.03687 0.99125 1.85505 1.13023 1.71914 1.21148 1.23177 1.04373 1.42056 0.99850 0.90153 1.26068 0.94424 0.95970 1.02577 1.70169 1.05654 1.42165 1.36727 0.85070 0.77699 0.78601 0.77057 1.18714 1.20483 1.18813 0.93944 0.94841 0.92494 0.90194 0.88691 0.89802 0.89225 0.75642 0.78183 0.88863 0.85997 0.88645 0.77021 0.75033 0.87904 0.87347 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.51 71.98 0.61 -3.12 16 2 C -0.12 -2.20 5.61 30.59 0.17 -2.03 16 3 C 0.14 2.61 2.42 44.99 0.11 2.72 16 4 H 0.08 1.85 7.58 -2.39 -0.02 1.83 16 5 C 0.12 1.92 5.23 86.38 0.45 2.37 16 6 N -0.72 -12.28 5.38 -466.37 -2.51 -14.78 16 7 C 0.60 12.59 7.81 86.66 0.68 13.27 16 8 O -0.59 -15.55 16.90 -4.01 -0.07 -15.62 16 9 C -0.32 -6.07 6.13 -20.15 -0.12 -6.19 16 10 C 0.08 1.56 11.50 85.65 0.99 2.55 16 11 N -0.33 -6.98 12.50 -56.28 -0.70 -7.68 16 12 N -0.36 -5.44 3.98 -367.79 -1.46 -6.91 16 13 C 0.09 0.46 11.44 127.77 1.46 1.92 16 14 C 0.14 2.04 11.30 84.27 0.95 2.99 16 15 N -0.71 -15.08 4.47 -442.55 -1.98 -17.05 16 16 C 0.54 17.55 6.42 87.66 0.56 18.11 16 17 O -0.55 -22.36 13.00 -3.02 -0.04 -22.39 16 18 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 19 S -0.14 -7.66 20.57 -56.49 -1.16 -8.83 16 20 C -0.55 -30.72 9.50 67.95 0.65 -30.07 16 21 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 22 C 0.01 0.82 5.49 84.86 0.47 1.28 16 23 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 24 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 28 H 0.04 1.24 7.85 -2.39 -0.02 1.22 16 29 H 0.03 1.07 5.64 -2.39 -0.01 1.05 16 30 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.41 6.46 7.09 -92.71 -0.66 5.80 16 36 H 0.20 3.09 7.50 -2.91 -0.02 3.06 16 37 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.41 6.68 8.60 -92.71 -0.80 5.88 16 42 H 0.10 3.52 8.14 -2.40 -0.02 3.50 16 43 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -83.14 388.27 1.38 -81.75 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.42 Total: 22.01 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 7.41 Total: -0.68 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -6.37 Total: -101.63 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.11 Total: -38.02 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.83 kcal Total: -83.14 1.38 -81.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531070493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.608 kcal (2) G-P(sol) polarization free energy of solvation -83.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds